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2021

Shafer, Maxwell E. R. and Sawh, Ahilya N. and Schier, Alexander F.. (2021) Gene family evolution underlies cell type diversification in the hypothalamus of teleosts.

2020

Ma, Manxiu and Ramirez, Alexandro D. and Wang, Tong and Roberts, Rachel L. and Harmon, Katherine E. and Schoppik, David and Sharma, Avirale and Kuang, Christopher and Goei, Stephanie L. and Gagnon, James A. and Zimmerman, Steve and Tsai, Shengdar Q. and Reyon, Deepak and Joung, J. Keith and Aksay, Emre R. F. and Schier, Alexander F. and Pan, Y. Albert. (2020) Zebrafish dscaml1 Deficiency Impairs Retinal Patterning and Oculomotor Function. Journal of Neuroscience, 40 (1). pp. 143-158.

2019

Haesemeyer, Martin and Schier, Alexander F. and Engert, Florian. (2019) Convergent Temperature Representations in Artificial and Biological Neural Networks. Neuron, 103 (6). pp. 1123-1134.e6.

Goudarzi, Mehdi and Berg, Kathryn and Pieper, Lindsey M. and Schier, Alexander F.. (2019) Individual long non-coding RNAs have no overt functions in zebrafish embryogenesis, viability and fertility. eLife, 8. 8:e40815.

Wee, Caroline L. and Nikitchenko, Maxim and Wang, Wei-Chun and Luks-Morgan, Sasha J. and Song, Erin and Gagnon, James A. and Randlett, Owen and Bianco, Isaac H. and Lacoste, Alix M. B. and Glushenkova, Elena and Barrios, Joshua P. and Schier, Alexander F. and Kunes, Samuel and Engert, Florian and Douglass, Adam D.. (2019) Zebrafish oxytocin neurons drive nocifensive behavior via brainstem premotor targets. Nature neuroscience, 22 (9). pp. 1477-1492.

Randlett, Owen and Haesemeyer, Martin and Forkin, Greg and Shoenhard, Hannah and Schier, Alexander F. and Engert, Florian and Granato, Michael. (2019) Distributed Plasticity Drives Visual Habituation Learning in Larval Zebrafish. Current biology : CB, 29 (8). pp. 1337-1345.e4.

Thyme, Summer B. and Pieper, Lindsey M. and Li, Eric H. and Pandey, Shristi and Wang, Yiqun and Morris, Nathan S. and Sha, Carrie and Choi, Joo Won and Herrera, Kristian J. and Soucy, Edward R. and Zimmerman, Steve and Randlett, Owen and Greenwood, Joel and McCarroll, Steven A. and Schier, Alexander F.. (2019) Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Cell, 177 (2). pp. 478-491.e20.

2018

Montague, Tessa G. and Gagnon, James A. and Schier, Alexander F.. (2018) Conserved regulation of Nodal-mediated left-right patterning in zebrafish and mouse. Development (Cambridge, England), 145 (24). p. 9.

Raj, Bushra and Gagnon, James A. and Schier, Alexander F.. (2018) Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR-Cas9 barcodes by scGESTALT. Nature protocols, 13 (11). pp. 2685-2713.

Almuedo-Castillo, María and Bläßle, Alexander and Mörsdorf, David and Marcon, Luciano and Soh, Gary H. and Rogers, Katherine W. and Schier, Alexander F. and Müller, Patrick. (2018) Scale-invariant patterning by size-dependent inhibition of Nodal signalling. Nature cell biology, 20 (9). pp. 1032-1042.

Haesemeyer, Martin and Robson, Drew N. and Li, Jennifer M. and Schier, Alexander F. and Engert, Florian. (2018) A Brain-wide Circuit Model of Heat-Evoked Swimming Behavior in Larval Zebrafish. Neuron, 98 (4). pp. 817-831.e6.

Farrell, Jeffrey A. and Wang, Yiqun and Riesenfeld, Samantha J. and Shekhar, Karthik and Regev, Aviv and Schier, Alexander F.. (2018) Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis. Science (New York, N.Y.), 360 (6392). p. 6.

Raj, Bushra and Wagner, Daniel E. and McKenna, Aaron and Pandey, Shristi and Klein, Allon M. and Shendure, Jay and Gagnon, James A. and Schier, Alexander F.. (2018) Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain. Nature biotechnology, 36 (5). pp. 442-450.

Pandey, Shristi and Shekhar, Karthik and Regev, Aviv and Schier, Alexander F.. (2018) Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq. Current biology : CB, 28 (7). pp. 1052-1065.e7.

Gagnon, James A. and Obbad, Kamal and Schier, Alexander F.. (2018) The primary role of zebrafish nanog is in extra-embryonic tissue. Development (Cambridge, England), 145 (1). p. 9.

2017

Rabani, Michal and Pieper, Lindsey and Chew, Guo-Liang and Schier, Alexander F.. (2017) A Massively Parallel Reporter Assay of 3' UTR Sequences Identifies In Vivo Rules for mRNA Degradation. Molecular Cell, 68 (6). pp. 1083-1094.e5.

Rogers, Katherine W. and Lord, Nathan D. and Gagnon, James A. and Pauli, Andrea and Zimmerman, Steven and Aksel, Deniz C. and Reyon, Deepak and Tsai, Shengdar Q. and Joung, J. Keith and Schier, Alexander F.. (2017) Nodal patterning without Lefty inhibitory feedback is functional but fragile. eLife, 6. 6:e28785.

Montague, Tessa G. and Schier, Alexander F.. (2017) Vg1-Nodal heterodimers are the endogenous inducers of mesendoderm. eLife, 6. 6:e28183.

Norris, Megan L. and Pauli, Andrea and Gagnon, James A. and Lord, Nathan D. and Rogers, Katherine W. and Mosimann, Christian and Zon, Leonard I. and Schier, Alexander F.. (2017) Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling. eLife, 6. 6:e22626.

Escamilla, Christine Ochoa and Filonova, Irina and Walker, Angela K. and Xuan, Zhong X. and Holehonnur, Roopashri and Espinosa, Felipe and Liu, Shunan and Thyme, Summer B. and López-García, Isabel A. and Mendoza, Dorian B. and Usui, Noriyoshi and Ellegood, Jacob and Eisch, Amelia J. and Konopka, Genevieve and Lerch, Jason P. and Schier, Alexander F. and Speed, Haley E. and Powell, Craig M.. (2017) Kctd13 deletion reduces synaptic transmission via increased RhoA. Nature, 551 (7679). pp. 227-231.

Schoppik, David and Bianco, Isaac H. and Prober, David A. and Douglass, Adam D. and Robson, Drew N. and Li, Jennifer M. B. and Greenwood, Joel S. F. and Soucy, Edward and Engert, Florian and Schier, Alexander F.. (2017) Gaze-Stabilizing Central Vestibular Neurons Project Asymmetrically to Extraocular Motoneuron Pools. The Journal of Neuroscience, 37 (47). pp. 11353-11365.

Freyer, Laina and Hsu, Chih-Wei and Nowotschin, Sonja and Pauli, Andrea and Ishida, Junji and Kuba, Keiji and Fukamizu, Akiyoshi and Schier, Alexander F. and Hoodless, Pamela A. and Dickinson, Mary E. and Hadjantonakis, Anna-Katerina. (2017) Loss of Apela Peptide in Mice Causes Low Penetrance Embryonic Lethality and Defects in Early Mesodermal Derivatives. Cell reports, 20 (9). pp. 2116-2130.

Hildebrand, David Grant Colburn and Cicconet, Marcelo and Torres, Russel Miguel and Choi, Woohyuk and Quan, Tran Minh and Moon, Jungmin and Wetzel, Arthur Willis and Scott Champion, Andrew and Graham, Brett Jesse and Randlett, Owen and Plummer, George Scott and Portugues, Ruben and Bianco, Isaac Henry and Saalfeld, Stephan and Baden, Alexander David and Lillaney, Kunal and Burns, Randal and Vogelstein, Joshua Tzvi and Schier, Alexander Franz and Lee, Wei-Chung Allen and Jeong, Won-Ki and Lichtman, Jeff William and Engert, Florian. (2017) Whole-brain serial-section electron microscopy in larval zebrafish. Nature, 545 (7654). pp. 345-349.

2016

Thyme, Summer B. and Akhmetova, Laila and Montague, Tessa G. and Valen, Eivind and Schier, Alexander F.. (2016) Internal guide RNA interactions interfere with Cas9-mediated cleavage. Nature communications, 7. p. 11750.

McKenna, Aaron and Findlay, Gregory M. and Gagnon, James A. and Horwitz, Marshall S. and Schier, Alexander F. and Shendure, Jay. (2016) Whole-organism lineage tracing by combinatorial and cumulative genome editing. Science (New York, N.Y.), 353 (6298). aaf7907.

Chew, Guo-Liang and Pauli, Andrea and Schier, Alexander F.. (2016) Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish. Nature communications, 7. p. 11663.

Thyme, Summer B. and Schier, Alexander F.. (2016) Polq-Mediated End Joining Is Essential for Surviving DNA Double-Strand Breaks during Early Zebrafish Development. Cell reports, 15 (4). pp. 707-714.

Li-Villarreal, Nanbing and Forbes, Meredyth M. and Loza, Andrew J. and Chen, Jiakun and Ma, Taylur and Helde, Kathryn and Moens, Cecilia B. and Shin, Jimann and Sawada, Atsushi and Hindes, Anna E. and Dubrulle, Julien and Schier, Alexander F. and Longmore, Gregory D. and Marlow, Florence L. and Solnica-Krezel, Lilianna. (2016) Dachsous1b cadherin regulates actin and microtubule cytoskeleton during early zebrafish embryogenesis. Development, 143 (10). p. 1832.

Dunn, Timothy W. and Mu, Yu and Narayan, Sujatha and Randlett, Owen and Naumann, Eva A. and Yang, Chao-Tsung and Schier, Alexander F. and Freeman, Jeremy and Engert, Florian and Ahrens, Misha B.. (2016) Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion. eLife, 5. e12741.

Chiu, Cindy N. and Rihel, Jason and Lee, Daniel A. and Singh, Chanpreet and Mosser, Eric A. and Chen, Shijia and Sapin, Viveca and Pham, Uyen and Engle, Jae and Niles, Brett J. and Montz, Christin J. and Chakravarthy, Sridhara and Zimmerman, Steven and Salehi-Ashtiani, Kourosh and Vidal, Marc and Schier, Alexander F. and Prober, David A.. (2016) A Zebrafish Genetic Screen Identifies Neuromedin U as a Regulator of Sleep/Wake States. Neuron, 89 (4). pp. 842-856.

2015

Randlett, Owen and Wee, Caroline L. and Naumann, Eva A. and Nnaemeka, Onyeka and Schoppik, David and Fitzgerald, James E. and Portugues, Ruben and Lacoste, Alix M. B. and Riegler, Clemens and Engert, Florian and Schier, Alexander F.. (2015) Whole-brain activity mapping onto a zebrafish brain atlas. Nature Methods, 12 (11). pp. 1039-1046.

Haesemeyer, Martin and Robson, Drew N. and Li, Jennifer M. and Schier, Alexander F. and Engert, Florian. (2015) The structure and timescales of heat perception in larval zebrafish. Cell Systems, 1 (5). pp. 338-348.

Pauli, Andrea and Montague, Tessa G. and Lennox, Kim A. and Behlke, Mark A. and Schier, Alexander F.. (2015) Antisense Oligonucleotide-Mediated Transcript Knockdown in Zebrafish. PloS one, 10 (10). e0139504.

Li-Villarreal, Nanbing and Forbes, Meredyth M. and Loza, Andrew J. and Chen, Jiakun and Ma, Taylur and Helde, Kathryn and Moens, Cecilia B. and Shin, Jimann and Sawada, Atsushi and Hindes, Anna E. and Dubrulle, Julien and Schier, Alexander F. and Longmore, Gregory D. and Marlow, Florence L. and Solnica-Krezel, Lilianna. (2015) Dachsous1b cadherin regulates actin and microtubule cytoskeleton during early zebrafish embryogenesis. Development, 142 (15). pp. 2704-2718.

Lacoste, Alix M. B. and Schoppik, David and Robson, Drew N. and Haesemeyer, Martin and Portugues, Ruben and Li, Jennifer M. and Randlett, Owen and Wee, Caroline L. and Engert, Florian and Schier, Alexander F.. (2015) A convergent and essential interneuron pathway for Mauthner-cell-mediated escapes. Current biology : CB, 25 (11). pp. 1526-1534.

Merkle, Florian T. and Neuhausser, Werner M. and Santos, David and Valen, Eivind and Gagnon, James A. and Maas, Kristi and Sandoe, Jackson and Schier, Alexander F. and Eggan, Kevin. (2015) Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus. Cell Reports , 11 (6). pp. 875-883.

Satija, Rahul and Farrell, Jeffrey A. and Gennert, David and Schier, Alexander F. and Regev, Aviv. (2015) Spatial reconstruction of single-cell gene expression data. Nature biotechnology, 33 (5). pp. 495-502.

Liu, Justin and Merkle, Florian T. and Gandhi, Avni V. and Gagnon, James A. and Woods, Ian G. and Chiu, Cindy N. and Shimogori, Tomomi and Schier, Alexander F. and Prober, David A.. (2015) Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9. Development, 142 (6). pp. 1113-1124.

Mundell, Nathan A. and Beier, Kevin T. and Pan, Y. Albert and Lapan, Sylvain W. and Göz Aytürk, Didem and Berezovskii, Vladimir K. and Wark, Abigail R. and Drokhlyansky, Eugene and Bielecki, Jan and Born, Richard T. and Schier, Alexander F. and Cepko, Constance L.. (2015) Vesicular stomatitis virus enables gene transfer and transsynaptic tracing in a wide range of organisms. Journal of Comparative Neurology, 523 (11). pp. 1639-1663.

Merkle, Florian T. and Maroof, Asif and Wataya, Takafumi and Sasai, Yoshiki and Studer, Lorenz and Eggan, Kevin and Schier, Alexander F.. (2015) Generation of neuropeptidergic hypothalamic neurons from human pluripotent stem cells. Development (Cambridge, England), 142 (4). pp. 633-643.

Rogers, Katherine W. and Blässle, Alexander and Schier, Alexander F. and Müller, Patrick. (2015) Measuring protein stability in living zebrafish embryos using fluorescence decay after photoconversion (FDAP). Journal of visualized experiments (95). e52266.

Haesemeyer, Martin and Schier, Alexander F.. (2015) The study of psychiatric disease genes and drugs in zebrafish. Current Opinion in Neurobiology, 30. pp. 122-130.

Pauli, Andrea and Valen, Eivind and Schier, Alexander F.. (2015) Identifying (non-)coding RNAs and small peptides: challenges and opportunities. BioEssays : news and reviews in molecular, cellular and developmental biology, 37 (1). pp. 103-112.

Dubrulle, Julien and Jordan, Benjamin M. and Akhmetova, Laila and Farrell, Jeffrey A. and Kim, Seok-Hyung and Solnica-Krezel, Lilianna and Schier, Alexander F.. (2015) Response to Nodal morphogen gradient is determined by the kinetics of target gene induction. eLife, 4. e05042.

2014

Rabani, Michal and Raychowdhury, Raktima and Jovanovic, Marko and Rooney, Michael and Stumpo, Deborah J. and Pauli, Andrea and Hacohen, Nir and Schier, Alexander F. and Blackshear, Perry J. and Friedman, Nir and Amit, Ido and Regev, Aviv. (2014) High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies. Cell, 159 (7). pp. 1698-1710.

Schier, Alexander F.. (2014) Obituary: Walter J. Gehring (1939-2014). Development, 141 (17). pp. 3289-3291.

Richter, Constance and Woods, Ian G. and Schier, Alexander F.. (2014) Neuropeptidergic control of sleep and wakefulness. Annual Review of Neuroscience, 37. pp. 503-531.

Gagnon, James A. and Valen, Eivind and Thyme, Summer B. and Huang, Peng and Akhmetova, Laila and Pauli, Andrea and Montague, Tessa G. and Zimmerman, Steven and Richter, Constance and Schier, Alexander F.. (2014) Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs. PLoS ONE, 9 (5). e98186.

Woods, Ian G. and Schoppik, David and Shi, Veronica J. and Zimmerman, Steven and Coleman, Haley A. and Greenwood, Joel and Soucy, Edward R. and Schier, Alexander F.. (2014) Neuropeptidergic signaling partitions arousal behaviors in zebrafish. Journal of Neuroscience, 34 (9). pp. 3142-3160.

Pauli, Andrea and Norris, Megan L. and Valen, Eivind and Chew, Guo-Liang and Gagnon, James A. and Zimmerman, Steven and Mitchell, Andrew and Ma, Jiao and Dubrulle, Julien and Reyon, Deepak and Tsai, Shengdar Q. and Joung, J. Keith and Saghatelian, Alan and Schier, Alexander F.. (2014) Toddler: an embryonic signal that promotes cell movement via Apelin receptors. Science, 343 (6172). p. 1248636.

Zhang, Yong and Vastenhouw, Nadine L. and Feng, Jianxing and Fu, Kai and Wang, Chenfei and Ge, Ying and Pauli, Andrea and van Hummelen, Paul and Schier, Alexander F. and Liu, X. Shirley. (2014) Canonical nucleosome organization at promoters forms during genome activation. Genome Research, 24 (2). pp. 260-266.

2013

Schier, Alexander F.. (2013) Should I stay or should I go: neuromodulators of behavioral states. Cell, 154 (5). pp. 955-956.

Pan, Y. Albert and Freundlich, Tom and Weissman, Tamily A. and Schoppik, David and Wang, X. Cindy and Zimmerman, Steve and Ciruna, Brian and Sanes, Joshua R. and Lichtman, Jeff W. and Schier, Alexander F.. (2013) Zebrabow: multispectral cell labeling for cell tracing and lineage analysis in zebrafish. Development, 140 (13). pp. 2835-2846.

Rihel, Jason and Schier, Alexander F.. (2013) Sites of action of sleep and wake drugs: insights from model organisms. Current Opinion in Neurobiology, 23 (5). pp. 831-840.

2012

Vastenhouw, Nadine L. and Schier, Alexander F.. (2012) Bivalent histone modifications in early embryogenesis. Current Opinion in Cell Biology, 24 (3). pp. 374-386.

Müller, Patrick and Rogers, Katherine W. and Jordan, Ben M. and Lee, Joon S. and Robson, Drew and Ramanathan, Sharad and Schier, Alexander F.. (2012) Differential diffusivity of Nodal and Lefty underlies a reaction-diffusion patterning system. Science, 336 (6082). pp. 721-724.

Low, Sean E. and Woods, Ian G. and Lachance, Mathieu and Ryan, Joel and Schier, Alexander F. and Saint-Amant, Louis. (2012) Touch responsiveness in zebrafish requires voltage-gated calcium channel 2.1b. Journal of Neurophysiology, 108 (1). pp. 148-159.

Xu, Cong and Fan, Zi Peng and Müller, Patrick and Fogley, Rachel and DiBiase, Anthony and Trompouki, Eirini and Unternaehrer, Juli and Xiong, Fengzhu and Torregroza, Ingrid and Evans, Todd and Megason, Sean G. and Daley, George Q. and Schier, Alexander F. and Young, Richard A. and Zon, Leonard I.. (2012) Nanog-like regulates endoderm formation through the Mxtx2-Nodal pathway. Developmental Cell, 22 (3). pp. 625-638.

2008

Caron, Sophie J. C. and Prober, David and Choy, Margaret and Schier, Alexander F.. (2008) In vivo birthdating by BAPTISM reveals that trigeminal sensory neuron diversity depends on early neurogenesis. Development, 135 (19). pp. 3259-3269.

Douglass, Adam D. and Kraves, Sebastian and Deisseroth, Karl and Schier, Alexander F. and Engert, Florian. (2008) Escape behavior elicited by single, channelrhodopsin-2-evoked spikes in zebrafish somatosensory neurons. Current Biology, 18 (15). pp. 1133-1137.

Woods, Ian G. and Schier, Alexander F.. (2008) Targeted mutagenesis in zebrafish. Nature Biotechnology, 26 (6). pp. 650-651.

Knaut, Holger and Schier, Alexander F.. (2008) Clearing the path for germ cells. Cell, 132 (3). pp. 337-339.

2007

Bennett, James T. and Stickney, Heather L. and Choi, Wen-Yee and Ciruna, Brian and Talbot, William S. and Schier, Alexander F.. (2007) Maternal nodal and zebrafish embryogenesis. Nature, 450 (7167). E1-2; discussion E2-E4.

Choi, Wen-Yee and Giraldez, Antonio J. and Schier, Alexander F.. (2007) Target protectors reveal dampening and balancing of Nodal agonist and antagonist by miR-430. Science, 318 (5848). pp. 271-274.

Schier, Alexander F.. (2007) The maternal-zygotic transition: death and birth of RNAs. Science, 316 (5823). pp. 406-407.

Bennett, James T. and Joubin, Katherine and Cheng, Simon and Aanstad, Pia and Herwig, Ralf and Clark, Matthew and Lehrach, Hans and Schier, Alexander F.. (2007) Nodal signaling activates differentiation genes during zebrafish gastrulation. Developmental Biology, 304 (2). pp. 525-540.

Karkera, J. D. and Lee, J. S. and Roessler, E. and Banerjee-Basu, S. and Ouspenskaia, M. V. and Mez, J. and Goldmuntz, E. and Bowers, P. and Towbin, J. and Belmont, J. W. and Baxevanis, A. D. and Schier, A. F. and Muenke, M.. (2007) Loss-of-function mutations in growth differentiation factor-1 (GDF1) are associated with congenital heart defects in humans. American Journal of Human Genetics, 81 (5). pp. 987-994.

2006

Prober, David A. and Rihel, Jason and Onah, Anthony A. and Sung, Rou-Jia and Schier, Alexander F.. (2006) Hypocretin/orexin overexpression induces an insomnia-like phenotype in zebrafish. Journal of Neuroscience, 26 (51). pp. 13400-13410.

Mishima, Yuichiro and Giraldez, Antonio J. and Takeda, Yasuaki and Fujiwara, Toshinobu and Sakamoto, Hiroshi and Schier, Alexander F. and Inoue, Kunio. (2006) Differential regulation of germline mRNAs in soma and germ cells by zebrafish miR-430. Current Biology, 16 (21). pp. 2135-2142.

Obara, Tomoko and Mangos, Steven and Liu, Yan and Zhao, Jinhua and Wiessner, Stephanie and Kramer-Zucker, Albrecht G. and Olale, Felix and Schier, Alexander F. and Drummond, Iain A.. (2006) Polycystin-2 immunolocalization and function in zebrafish. Journal of the American Society of Nephrology, 17 (10). pp. 2706-2718.

Giraldez, Antonio J. and Mishima, Yuichiro and Rihel, Jason and Grocock, Russell J. and Van Dongen, Stijn and Inoue, Kunio and Enright, Anton J. and Schier, Alexander F.. (2006) Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science, 312 (5770). pp. 75-79.

Ciruna, Brian and Jenny, Andreas and Lee, Diana and Mlodzik, Marek and Schier, Alexander F.. (2006) Planar cell polarity signalling couples cell division and morphogenesis during neurulation. Nature, 439 (7073). pp. 220-224.

Schier, A. F. and Giraldez, A. J.. (2006) MicroRNA function and mechanism: insights from zebra fish. Cold Spring Harbor Symposia on Quantitative Biology, 71. pp. 195-203.

2005

Schier, Alexander F.. (2005) Axis formation: squint comes into focus. Current Biology, 15 (24). R1002-R1005.

Schier, Alexander F. and Talbot, William S.. (2005) Molecular genetics of axis formation in zebrafish. Annual Review of Genetics, 39. pp. 561-613.

Knaut, Holger and Blader, Patrick and Strähle, Uwe and Schier, Alexander F.. (2005) Assembly of trigeminal sensory ganglia by chemokine signaling. Neuron, 47 (5). pp. 653-666.

Sagasti, Alvaro and Guido, Matthew R. and Raible, David W. and Schier, Alexander F.. (2005) Repulsive interactions shape the morphologies and functional arrangement of zebrafish peripheral sensory arbors. Current Biology, 15 (9). pp. 804-814.

Kramer-Zucker, Albrecht G. and Olale, Felix and Haycraft, Courtney J. and Yoder, Bradley K. and Schier, Alexander F. and Drummond, Iain A.. (2005) Cilia-driven fluid flow in the zebrafish pronephros, brain and Kupffer's vesicle is required for normal organogenesis. Development, 132 (8). pp. 1907-1921.

Giraldez, Antonio J. and Cinalli, Ryan M. and Glasner, Margaret E. and Enright, Anton J. and Thomson, J. Michael and Baskerville, Scott and Hammond, Scott M. and Bartel, David P. and Schier, Alexander F.. (2005) MicroRNAs regulate brain morphogenesis in zebrafish. Science, 308 (5723). pp. 833-838.

Dutta, Sunit and Dietrich, Jens-Erik and Aspöck, Gudrun and Burdine, Rebecca D. and Schier, Alexander and Westerfield, Monte and Varga, Zoltán M.. (2005) pitx3 defines an equivalence domain for lens and anterior pituitary placode. Development, 132 (7). pp. 1579-1590.

Le Good, J. Ann and Joubin, Katherine and Giraldez, Antonio J. and Ben-Haim, Nadav and Beck, Séverine and Chen, Yu and Schier, Alexander F. and Constam, Daniel B.. (2005) Nodal stability determines signaling range. Current Biology, 15 (1). pp. 31-36.

Tyurina, Oksana V. and Guner, Burcu and Popova, Evgenya and Feng, Jianchi and Schier, Alexander F. and Kohtz, Jhumku D. and Karlstrom, Rolf O.. (2005) Zebrafish Gli3 functions as both an activator and a repressor in Hedgehog signaling. Developmental Biology, 277 (2). pp. 537-556.

2004

Schier, Alexander. (2004) Alexander Schier. Current Biology, 14 (13). R494.

Cheng, Simon K. and Olale, Felix and Brivanlou, Ali H. and Schier, Alexander F.. (2004) Lefty blocks a subset of TGFbeta signals by antagonizing EGF-CFC coreceptors. PLoS biology, 2 (2). E30.

Schier, Alexander F.. (2004) Developmental biology: tail of decay. Nature, 427 (6973). pp. 403-404.

2003

Schier, Alexander F.. (2003) Nodal signaling in vertebrate development. Annual review of cell and developmental biology, 19. pp. 589-621.

Kunwar, Prabhat S. and Zimmerman, Steven and Bennett, James T. and Chen, Yu and Whitman, Malcolm and Schier, Alexander F.. (2003) Mixer/Bon and FoxH1/Sur have overlapping and divergent roles in Nodal signaling and mesendoderm induction. Development, 130 (23). pp. 5589-5599.

Dougan, Scott T. and Warga, Rachel M. and Kane, Donald A. and Schier, Alexander F. and Talbot, William S.. (2003) The role of the zebrafish nodal-related genes squint and cyclops in patterning of mesendoderm. Development, 130 (9). pp. 1837-1851.

Karlstrom, Rolf O. and Tyurina, Oksana V. and Kawakami, Atsushi and Nishioka, Noriyuki and Talbot, William S. and Sasaki, Hiroshi and Schier, Alexander F.. (2003) Genetic analysis of zebrafish gli1 and gli2 reveals divergent requirements for gli genes in vertebrate development. Development, 130 (8). pp. 1549-1564.

Schier, Alexander F.. (2003) Chemokine signaling: rules of attraction. Current Biology, 13 (5). R192-R194.

Cheng, Simon K. and Olale, Felix and Bennett, James T. and Brivanlou, Ali H. and Schier, Alexander F.. (2003) EGF-CFC proteins are essential coreceptors for the TGF-beta signals Vg1 and GDF1. Genes and Development, 17 (1). pp. 31-36.

2002

Chen, Yu and Schier, Alexander F.. (2002) Lefty proteins are long-range inhibitors of squint-mediated nodal signaling. Current Biology, 12 (24). pp. 2124-2128.

Ciruna, Brian and Weidinger, Gilbert and Knaut, Holger and Thisse, Bernard and Thisse, Christine and Raz, Erez and Schier, Alexander F.. (2002) Production of maternal-zygotic mutant zebrafish by germ-line replacement. Proceedings of the National Academy of Sciences of the United States of America, 99 (23). pp. 14919-14924.

Moon, Ho-Sang and Jacobson, Eric M. and Khersonsky, Sonya M. and Luzung, Michael R. and Walsh, Daniel P. and Xiong, Wennan and Lee, Jae Wook and Parikh, Puja B. and Lam, Jennifer C. and Kang, Tae-Wook and Rosania, Gustavo R. and Schier, Alexander F. and Chang, Young-Tae. (2002) A novel microtubule destabilizing entity from orthogonal synthesis of triazine library and zebrafish embryo screening. Journal of the American Chemical Society, 124 (39). pp. 11608-11609.

de la Cruz, June M. and Bamford, Richard N. and Burdine, Rebecca D. and Roessler, Erich and Barkovich, James A. and Donnai, Dian and Schier, Alexander F. and Muenke, Maximilian. (2002) A loss-of-function mutation in the CFC domain of TDGF1 is associated with human forebrain defects. Human genetics, 110 (5). pp. 422-428.

Yamashita, Susumu and Miyagi, Chiemi and Carmany-Rampey, Amanda and Shimizu, Takashi and Fujii, Ritsuko and Schier, Alexander F. and Hirano, Toshio. (2002) Stat3 Controls Cell Movements during Zebrafish Gastrulation. Developmental Cell, 2 (3). pp. 363-375.

Kimelman, David and Schier , Alexander F.. (2002) Mesoderm Induction and Patterning. In: Pattern Formation in Zebrafish. Heidelberg, pp. 15-27.