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Huessy, Benjamin and Bumann, Dirk and Ebert, Dieter. (2023) Ectopical expression of bacterial collagen-like protein supports its role as adhesin in host-parasite coevolution.

Hauswirth, Patrick and Buck, Jonas and Puligilla, Ramya and Alter, Claudio Luca and Sieber, Sandro and Claudi, Beatrice and Fanous, Joseph and Bumann, Dirk and Huwyler, Jörg. (2023) Zebrafish Larvae as an; in vivo; Model for Antimicrobial Activity Tests against Intracellular; Salmonella;. Frontiers in bioscience (Landmark edition), 28 (5). p. 99.


Hinnu, Mariliis and Putrinš, Marta and Kogermann, Karin and Bumann, Dirk and Tenson, Tanel. (2022) Making Antimicrobial Susceptibility Testing More Physiologically Relevant with Bicarbonate? Antimicrobial Agents and Chemotherapy, 66 (5). e0241221.

Luscher, Alexandre and Gasser, Véronique and Bumann, Dirk and Mislin, Gaëtan L. A. and Schalk, Isabelle J. and Köhler, Thilo. (2022) Plant-Derived Catechols Are Substrates of TonB-Dependent Transporters and Sensitize Pseudomonas aeruginosa to Siderophore-Drug Conjugates. mBio, 13 (4). e0149822.

Dogga, Sunil Kumar and Lunghi, Matteo and Maco, Bohumil and Li, Jiagui and Claudi, Beatrice and Marq, Jean-Baptiste and Chicherova, Natalia and Kockmann, Tobias and Bumann, Dirk and Hehl, Adrian B. and Soldati-Favre, Dominique and Hammoudi, Pierre-Mehdi. (2022) Importance of aspartyl protease 5 in the establishment of the intracellular niche during acute and chronic infection of Toxoplasma gondii. Molecular Microbiology, 118 (6). pp. 601-622.


Ude, Johanna and Tripathi, Vishwachi and Buyck, Julien M. and Söderholm, Sandra and Cunrath, Olivier and Fanous, Joseph and Claudi, Beatrice and Egli, Adrian and Schleberger, Christian and Hiller, Sebastian and Bumann, Dirk. (2021) Outer membrane permeability: Antimicrobials and diverse nutrients bypass porins in Pseudomonas aeruginosa. Proceedings of the National Academy of Sciences of the United States of America, 118 (31). e2107644118.

Li, Jiagui and Claudi, Beatrice and Fanous, Joseph and Chicherova, Natalia and Cianfanelli, Francesca Romana and Campbell, Robert A. A. and Bumann, Dirk. (2021) Tissue compartmentalization enables; Salmonella; persistence during chemotherapy. Proceedings of the National Academy of Sciences of the United States of America, 118 (51). e2113951118.

Bhamidimarri, Satya Prathyusha and Young, Tessa R. and Shanmugam, Muralidharan and Soderholm, Sandra and Baslé, Arnaud and Bumann, Dirk and van den Berg, Bert. (2021) Acquisition of ionic copper by the bacterial outer membrane protein OprC through a novel binding site. PLoS Biology, 19 (11). e3001446.

Haschka, David and Tymoszuk, Piotr and Petzer, Verena and Hilbe, Richard and Heeke, Simon and Dichtl, Stefanie and Skvortsov, Sergej and Demetz, Egon and Berger, Sylvia and Seifert, Markus and Mitterstiller, Anna-Maria and Moser, Patrizia and Bumann, Dirk and Nairz, Manfred and Theurl, Igor and Weiss, Guenter. (2021) Ferritin H deficiency deteriorates cellular iron handling and worsens Salmonella typhimurium infection by triggering hyperinflammation. JCI insight, 6 (13). e141760.

Dehinwal, Ruchika and Cooley, Danielle and Rakov, Alexey V. and Alugupalli, Akhil S. and Harmon, Joey and Cunrath, Olivier and Vallabhajosyula, Prashanth and Bumann, Dirk and Schifferli, Dieter M.. (2021) Increased Production of Outer Membrane Vesicles by Salmonella Interferes with Complement-Mediated Innate Immune Attack. mBio, 12 (3). e0086921.

Huemer, Markus and Mairpady Shambat, Srikanth and Bergada-Pijuan, Judith and Söderholm, Sandra and Boumasmoud, Mathilde and Vulin, Clément and Gómez-Mejia, Alejandro and Antelo Varela, Minia and Tripathi, Vishwachi and Götschi, Sandra and Marques Maggio, Ewerton and Hasse, Barbara and Brugger, Silvio D. and Bumann, Dirk and Schuepbach, Reto A. and Zinkernagel, Annelies S.. (2021) Molecular reprogramming and phenotype switching in; Staphylococcus aureus; lead to high antibiotic persistence and affect therapy success. Proceedings of the National Academy of Sciences of the United States of America, 118 (7). e2014920118.


Cianfanelli, Francesca Romana and Cunrath, Olivier and Bumann, Dirk. (2020) Efficient Dual-Negative Selection for Bacterial Genome Editing.

Hausmann, Annika and Böck, Desirée and Geiser, Petra and Berthold, Dorothée L. and Fattinger, Stefan A. and Furter, Markus and Bouman, Judith A. and Barthel-Scherrer, Manja and Lang, Crispin M. and Bakkeren, Erik and Kolinko, Isabel and Diard, Médéric and Bumann, Dirk and Slack, Emma and Regoes, Roland R. and Pilhofer, Martin and Sellin, Mikael E. and Hardt, Wolf-Dietrich. (2020) Intestinal epithelial NAIP/NLRC4 restricts systemic dissemination of the adapted pathogen Salmonella Typhimurium due to site-specific bacterial PAMP expression. Mucosal Immunology (13). pp. 530-544.

Rosas-Ballina, Mauricio and Guan, Xue Li and Schmidt, Alexander and Bumann, Dirk. (2020) Classical Activation of Macrophages Leads to Lipid Droplet Formation Without; de novo; Fatty Acid Synthesis. Frontiers in Immunology, 11. p. 131.

Mas, Guillaume and Burmann, Björn M. and Sharpe, Timothy and Claudi, Beatrice and Bumann, Dirk and Hiller, Sebastian. (2020) Regulation of chaperone function by coupled folding and oligomerization. Science advances, 6 (43). eabc5822.

Roche, Béatrice and Bumann, Dirk. (2020) Single-cell reporters for pathogen responses to antimicrobial host attacks. Current opinion in microbiology, 59. pp. 16-23.

Wolf, Tobias and Jin, Wenjie and Zoppi, Giada and Vogel, Ian A. and Akhmedov, Murodzhon and Bleck, Christopher K. E. and Beltraminelli, Tim and Rieckmann, Jan C. and Ramirez, Neftali J. and Benevento, Marco and Notarbartolo, Samuele and Bumann, Dirk and Meissner, Felix and Grimbacher, Bodo and Mann, Matthias and Lanzavecchia, Antonio and Sallusto, Federica and Kwee, Ivo and Geiger, Roger. (2020) Dynamics in protein translation sustaining T cell preparedness. Nature immunology, 21 (8). pp. 927-937.

Cunrath, Olivier and Graulier, Gwenaëlle and Carballido-Lopez, Ana and Pérard, Julien and Forster, Anne and Geoffroy, Valérie A. and Saint Auguste, Pamela and Bumann, Dirk and Mislin, Gaetan L. A. and Michaud-Soret, Isabelle and Schalk, Isabelle J. and Fechter, Pierre. (2020) The pathogen; Pseudomonas aeruginosa; optimizes the production of the siderophore pyochelin upon environmental challenges. Metallomics, 12 (12). pp. 2108-2120.


Eren, Elif and Planes, Rémi and Buyck, Julien and Bordignon, Pierre-Jean and Colom, André and Cunrath, Olivier and Dreier, Roland F. and Santos, José C. and Duplan-Eche, Valérie and Näser, Emmanuelle and Peixoto, Antonio and Bumann, Dirk and Cougoule, Céline and Coste, Agnès and Neyrolles, Olivier and Broz, Petr and Meunier, Etienne. (2019) Type-3 Secretion System-induced pyroptosis protects Pseudomonas against cell-autonomous immunity.

Jayachandran, Rajesh and Gumienny, Aleksandra and Bolinger, Beatrice and Ruehl, Sebastian and Lang, Mathias Jakob and Fucile, Geoffrey and Mazumder, Saumyabrata and Tchang, Vincent Sam Yong and Woischnig, Anne-Kathrin and Stiess, Michael and Kunz, Gabriele and Claudi, Beatrice and Schmaler, Mathias and Siegmund, Kerstin and Li, Jianping and Dertschnig, Simone and Hollaender, George and Medina, Eva and Karrer, Urs and Moshous, Despina and Bumann, Dirk and Khanna, Nina and Rossi, Simona W. and Pieters, Jean. (2019) Disruption of Coronin 1 Signaling in T Cells Promotes Allograft Tolerance while Maintaining Anti-Pathogen Immunity. Immunity, 50 (1). pp. 152-165.

Balaban, Nathalie Q. and Helaine, Sophie and Lewis, Kim and Ackermann, Martin and Aldridge, Bree and Andersson, Dan I. and Brynildsen, Mark P. and Bumann, Dirk and Camilli, Andrew and Collins, James J. and Dehio, Christoph and Fortune, Sarah M. and Ghigo, Jean-Marc and Hardt, Wolf-Dietrich and Harms, Alexander and Heinemann, Matthias and Hung, Deborah T. and Jenal, Urs and Levin, Bruce R. and Michiels, Jan and Storz, Gisela and Tan, Man-Wah and Tenson, Tanel and Van Melderen, Laurence and Zinkernagel, Annelies. (2019) Definitions and guidelines for research on antibiotic persistence. Nature Reviews Microbiology, 17 (7). pp. 441-448.

Trebosc, Vincent and Gartenmann, Sarah and Tötzl, Marcus and Lucchini, Valentina and Schellhorn, Birgit and Pieren, Michel and Lociuro, Sergio and Gitzinger, Marc and Tigges, Marcel and Bumann, Dirk and Kemmer, Christian. (2019) Dissecting Colistin Resistance Mechanisms in Extensively Drug-Resistant Acinetobacter baumannii Clinical Isolates. mBio, 10 (4). e01083-19.

Cunrath, Olivier and Meinel, Dominik M. and Maturana, Pauline and Fanous, Joseph and Buyck, Julien M. and Saint Auguste, Pamela and Seth-Smith, Helena M. B. and Körner, Jonas and Dehio, Christoph and Trebosc, Vincent and Kemmer, Christian and Neher, Richard and Egli, Adrian and Bumann, Dirk. (2019) Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains. EBioMedicine, 41. pp. 479-487.

Cunrath, Oliver and Bumann, Dirk. (2019) Host resistance factor SLC11A1 restricts Salmonella growth through magnesium deprivation. Science, 366 (6468). pp. 995-999.

Bhamidimarri, Satya Prathyusha and Zahn, Michael and Prajapati, Jigneshkumar Dahyabhai and Schleberger, Christian and Söderholm, Sandra and Hoover, Jennifer and West, Josh and Kleinekathöfer, Ulrich and Bumann, Dirk and Winterhalter, Mathias and van den Berg, Bert. (2019) A Multidisciplinary Approach toward Identification of Antibiotic Scaffolds for Acinetobacter baumannii. Structure (London, England : 1993), 27 (2). pp. 268-280.e6.

Bumann, Dirk and Fanous, Joseph and Li, Jiagui and Goormaghtigh, Frédéric. (2019) Antibiotic chemotherapy against heterogeneous pathogen populations in complex host tissues. F1000Research, 8. p. 1781.

Carballido Lopez, Ana and Cunrath, Olivier and Forster, Anne and Pérard, Julien and Graulier, Gwenaëlle and Legendre, Rachel and Varet, Hugo and Sismeiro, Odile and Perraud, Quentin and Pesset, Bénédicte and Saint Auguste, Pamela and Bumann, Dirk and Mislin, Gaëtan L. A. and Coppee, Jean Yves and Michaud-Soret, Isabelle and Fechter, Pierre and Schalk, Isabelle J.. (2019) Non-specific interference of cobalt with siderophore-dependent iron uptake pathways. Metallomics : integrated biometal science, 11 (11). pp. 1937-1951.

Bumann, Dirk. (2019) Salmonella; Single-Cell Metabolism and Stress Responses in Complex Host Tissues. Microbiology spectrum, 7 (2). BAI-0009-2019.


Luscher, Alexandre and Moynié, Lucile and Auguste, Pamela Saint and Bumann, Dirk and Mazza, Lena and Pletzer, Daniel and Naismith, James H. and Köhler, Thilo. (2018) TonB-Dependent Receptor Repertoire of Pseudomonas aeruginosa for Uptake of Siderophore-Drug Conjugates. Antimicrobial agents and chemotherapy, 62 (6). e00097-18.

Lim, Daejin and Kim, Kwang Soo and Jeong, Jae-Ho and Marques, Oriana and Kim, Hyun-Ju and Song, Miryoung and Lee, Tae-Hoon and Kim, Jae Il and Choi, Hueng-Sik and Min, Jung-Joon and Bumann, Dirk and Muckenthaler, Martina U. and Choy, Hyon E.. (2018) The hepcidin-ferroportin axis controls the iron content of Salmonella-containing vacuoles in macrophages. Nature communications, 9 (1). p. 2091.

Samanta, Susruta and Bodrenko, Igor and Acosta-Gutiérrez, Silvia and D'Agostino, Tommaso and Pathania, Monisha and Ghai, Ishan and Schleberger, Christian and Bumann, Dirk and Wagner, Richard and Winterhalter, Mathias and van den Berg, Bert and Ceccarelli, Matteo. (2018) Getting Drugs through Small Pores: Exploiting the Porins Pathway in Pseudomonas aeruginosa. ACS infectious diseases, 4 (10). pp. 1519-1528.

Napolitani, Giorgio and Kurupati, Prathiba and Teng, Karen Wei Weng and Gibani, Malick M. and Rei, Margarida and Aulicino, Anna and Preciado-Llanes, Lorena and Wong, Michael Thomas and Becht, Etienne and Howson, Lauren and de Haas, Paola and Salio, Mariolina and Blohmke, Christoph J. and Olsen, Lars Rønn and Pinto, David Miguel Susano and Scifo, Laura and Jones, Claire and Dobinson, Hazel and Campbell, Danielle and Juel, Helene B. and Thomaides-Brears, Helena and Pickard, Derek and Bumann, Dirk and Baker, Stephen and Dougan, Gordon and Simmons, Alison and Gordon, Melita A. and Newell, Evan William and Pollard, Andrew J. and Cerundolo, Vincenzo. (2018) Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses. Nature immunology, 19 (7). pp. 742-754.


Schürmann, Nura and Forrer, Pascal and Casse, Olivier and Li, Jiagui and Felmy, Boas and Burgener, Anne-Valérie and Ehrenfeuchter, Nikolaus and Hardt, Wolf-Dietrich and Recher, Mike and Hess, Christoph and Tschan-Plessl, Astrid and Khanna, Nina and Bumann, Dirk. (2017) Myeloperoxidase targets oxidative host attacks to Salmonella and prevents collateral tissue damage. Nature Microbiology, 2. p. 16268.

Bumann, Dirk and Schothorst, Joep. (2017) Intracellular Salmonella metabolism. Cellular Microbiology, 19 (10). e12766.

Bumann, Dirk and Cunrath, Olivier. (2017) Heterogeneity of Salmonella-host interactions in infected host tissues. Current Opinion in Microbiology, 39. pp. 57-63.

Abellón-Ruiz, Javier and Kaptan, Shreyas S. and Baslé, Arnaud and Claudi, Beatrice and Bumann, Dirk and Kleinekathöfer, Ulrich and van den Berg, Bert. (2017) Structural basis for maintenance of bacterial outer membrane lipid asymmetry. Nature Microbiology, 2 (12). pp. 1616-1623.

Dehio, Christoph and Bumann, Dirk. (2017) Editorial overview: Bacterial systems biology. Current Opinion in Microbiology, 39. viii-xi.

Wu, Aimin and Tymoszuk, Piotr and Haschka, David and Heeke, Simon and Dichtl, Stefanie and Petzer, Verena and Seifert, Markus and Hilbe, Richard and Sopper, Sieghart and Talasz, Heribert and Bumann, Dirk and Lass-Flörl, Cornelia and Theurl, Igor and Zhang, Keying and Weiss, Guenter. (2017) Salmonella Utilizes Zinc To Subvert Antimicrobial Host Defense of Macrophages via Modulation of NF-κB Signaling. Infection and Immunity, 85 (12). e00418-17.


Gasser, Véronique and Baco, Etienne and Cunrath, Olivier and Saint August, Pamela and Perraud, Quentin and Zill, Nicolas and Schleberger, Christian and Schmidt, Alexander and Paulen, Aurélie and Bumann, Dirk and Mislin, Gaëtan L. A. and Schalk, Isabelle J.. (2016) Catechol siderophores repress the pyochelin pathway and activate the enterobactin pathway in Pseudomonas aeruginosa: an opportunity for siderophore-antibiotic conjugates development. Environmental Microbiology, 18 (3). pp. 819-832.

Freed, Nikki E. and Bumann, Dirk and Silander, Olin K.. (2016) Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality. BMC Microbiology, 16 (1). p. 203.

Trebosc, Vincent and Gartenmann, Sarah and Royet, Kevin and Manfredi, Pablo and Tötzl, Marcus and Schellhorn, Birgit and Pieren, Michel and Tigges, Marcel and Lociuro, Sergio and Sennhenn, Peter C. and Gitzinger, Marc and Bumann, Dirk and Kemmer, Christian. (2016) A novel genome editing platform for drug resistant Acinetobacter baumannii revealed an AdeR-unrelated tigecycline resistance mechanism. Antimicrobial Agents and Chemotherapy, 60 (12). pp. 7263-7271.


Martano, Giuseppe and Delmotte, Nathanaël and Kiefer, Patrick and Christen, Philipp and Kentner, David and Bumann, Dirk and Vorholt, Julia A.. (2015) Fast sampling method for mammalian cell metabolic analyses using liquid chromatography-mass spectrometry. Nature Protocols, 10 (1). pp. 1-11.

McEwan, David G. and Richter, Benjamin and Claudi, Beatrice and Wigge, Christoph and Wild, Philipp and Farhan, Hesso and McGourty, Kieran and Coxon, Fraser P. and Franz-Wachtel, Mirita and Perdu, Bram and Akutsu, Masato and Habermann, Anja and Kirchof, Anja and Helfrich, Miep H. and Odgren, Paul R. and Van Hul, Wim and Frangakis, Achilleas S. and Rajalingam, Krishnaraj and Macek, Boris and Holden, David W. and Bumann, Dirk and Dikic, Ivan. (2015) PLEKHM1 Regulates Salmonella-Containing Vacuole Biogenesis and Infection. Cell Host & Microbe, 17 (1). pp. 58-71.

Bumann, Dirk. (2015) Heterogeneous Host-Pathogen Encounters: Act Locally, Think Globally. Cell Host & Microbe, 17 (1). pp. 13-19.

Abu Kwaik, Yousef and Bumann, Dirk. (2015) Host delivery of favorite meals for intracellular pathogens. PLoS Pathogens, Vol. 11, H. 6 , e1004866.


Burton, Neil A. and Schürmann, Nura and Casse, Olivier and Steeb, Anne K. and Claudi, Beatrice and Zankl, Janine and Schmidt, Alexander and Bumann, Dirk. (2014) Disparate Impact of Oxidative Host Defenses Determines the Fate of Salmonella during Systemic Infection in Mice. Cell Host & Microbe, 15 (1). pp. 72-83.

Alain Mazé, and Timo Glatter, and Dirk Bumann, . (2014) The central metabolism regulator EIIAGlc switches Salmonella from growth arrest to acute virulence through activation of virulence factor secretion. Cell reports, Vol. 7, H. 5 , S. 1426–1433.

Meunier, Etienne and Dick, Mathias S. and Dreier, Roland F. and Schürmann, Nura and Kenzelmann Broz, Daniela and Warming, Søren and Roose-Girma, Merone and Bumann, Dirk and Kayagaki, Nobuhiko and Takeda, Kiyoshi and Yamamoto, Masahiro and Broz, Petr. (2014) Caspase-11 activation requires lysis of pathogen-containing vacuoles by IFN-induced GTPases. Nature, 509 (7500). pp. 366-370.

Claudi, Beatrice and Spröte, Petra and Chirkova, Anna and Personnic, Nicolas and Zankl, Janine and Schürmann, Nura and Schmidt, Alexander and Bumann, Dirk. (2014) Phenotypic variation of salmonella in host tissues delays eradication by antimicrobial chemotherapy. Cell, 158 (4). pp. 722-733.

Kentner, David and Martano, Giuseppe and Callon, Morgane and Chiquet, Petra and Brodmann, Maj and Burton, Olga and Wahlander, Asa and Nanni, Paolo and Delmotte, Nathanaël and Grossmann, Jonas and Limenitakis, Julien and Schlapbach, Ralph and Kiefer, Patrick and Vorholt, Julia A. and Hiller, Sebastian and Bumann, Dirk. (2014) Shigella reroutes host cell central metabolism to obtain high-flux nutrient supply for vigorous intracellular growth. Proceedings of the National Academy of Sciences of the United States of America, 111 (27). pp. 9929-9934.

Bumann, Dirk. (2014) Identification of protective antigens for vaccination against systemic salmonellosis. Frontiers in Immunology, 5 (381). pp. 1-5.


Steeb, Benjamin and Claudi, Beatrice and Burton, Neil A. and Tienz, Petra and Schmidt, Alexander and Farhan, Hesso and Mazé, Alain and Bumann, Dirk. (2013) Parallel exploitation of diverse host nutrients enhances salmonella virulence. PLoS Pathogens, Vol. 9, H. 4 , e1003301.

Kwaik, Yousef Abu and Bumann, Dirk. (2013) Microbial quest for food in vivo : "Nutritional virulence" as an emerging paradigm. Cellular Microbiology, 15 (6). pp. 882-890.


Leschner, Sara and Deyneko, Igor V. and Lienenklaus, Stefan and Wolf, Kathrin and Bloecker, Helmut and Bumann, Dirk and Loessner, Holger and Weiss, Siegfried. (2012) Identification of tumor-specific Salmonella Typhimurium promoters and their regulatory logic. Nucleic Acids Research, 40 (7). pp. 2984-2994.

Willer, Yvonne and Müller, Beatrice and Bumann, Dirk. (2012) Intestinal inflammation responds to microbial tissue load independent of pathogen/non-pathogen discrimination. PLoS ONE, Vol. 7, H. 5 , e35992.

Schrimpf, Sabine P. and von Mering, Christian and Bendixen, Emøke and Heazlewood, Joshua L. and Bumann, Dirk and Omenn, Gil and Hengartner, Michael O.. (2012) The initiative on Model Organism Proteomes (iMOP) Session September 6, 2011, Geneva, Switzerland. Proteomics, 12 (3). pp. 346-350.

Barat, Somedutta and Steeb, Benjamin and Mazé, Alain and Bumann, Dirk. (2012) Extensive in vivo resilience of persistent Salmonella. PLoS ONE, Vol. 7, H. 7 , e42007.

Barat, Somedutta and Willer, Yvonne and Rizos, Konstantin and Claudi, Beatrice and Mazé, Alain and Schemmer, Anne K. and Kirchhoff, Dennis and Schmidt, Alexander and Burton, Neil and Bumann, Dirk. (2012) Immunity to intracellular Salmonella depends on surface-associated antigens. PLoS Pathogens, Vol. 8, H. 10 , e1002966.

Mary, Camille and Duek, Paula and Salleron, Lisa and Tienz, Petra and Bumann, Dirk and Bairoch, Amos and Lane, Lydie. (2012) Functional Identification of APIP as Human mtnB, a Key Enzyme in the Methionine Salvage Pathway. PLoS ONE, 7 (12). e52877.


Pawelczyk, S. and Bumann, D. and Abraham, W. R.. (2011) Kinetics of carbon sharing in a bacterial consortium revealed by combining stable isotope probing with fluorescence-activated cell sorting. Journal of Applied Microbiology, 110 (4). pp. 1065-1073.

Stelter, C. and Kappeli, R. and Konig, C. and Krah, A. and Hardt, W. -D. and Stecher, B. and Bumann, D.. (2011) Salmonella-Induced Mucosal Lectin RegIIIbeta Kills Competing Gut Microbiota. PLoS ONE, 6 (6). e20749.

Wild, P. and Farhan, H. and McEwan, D. G. and Wagner, S. and Rogov, V. V. and Brady, N. R. and Richter, B. and Korac, J. and Waidmann, O. and Choudhary, C. and Dötsch, V. and Bumann, D. and Dikic, I.. (2011) Phosphorylation of the Autophagy Receptor Optineurin Restricts Salmonella Growth. Science, 333 (6039). pp. 228-233.

Hänisch, J. and Kolm, R. and Wozniczka, M. and Bumann, D. and Rottner, K. and Stradal, T. E. B.. (2011) Activation of a RhoA/Myosin II-Dependent but Arp2/3 Complex-Independent Pathway Facilitates Salmonella Invasion. Cell Host & Microbe, 9 (4). pp. 273-285.

Crull, K. and Bumann, D. and Weiss, S.. (2011) Influence of infection route and virulence factors on colonization of solid tumors by Salmonella enterica serovar Typhimurium. FEMS Immunology and Medical Microbiology, 62 (1). pp. 75-83.

Thiele, I. and Hyduke, D. R. and Steeb, B. and Fankam, G. and Allen, D. K. and Bazzani, S. and Charusanti, P. and Chen, F. -C. and Fleming, R. M. T. and Hsiung, C. A. and De Keersmaecker, S. C. J. and Liao, Y. -C. and Marchal, K. and Mo, M. L. and Ozdemir, E. and Raghunathan, A. and Reed, J. L. and Shin, S. -il and Sigurbjornsdottir, S. and Steinmann, J. and Sudarsan, S. and Swainston, N. and Thijs, I. M. and Zengler, K. and Palsson, B. O. and Adkins, J. N. and Bumann, D.. (2011) A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. BMC Systems Biology, 5 (8). pp. 1-9.


Bumann, Dirk. (2010) Pathogen proteomes during infection : a basis for infection research and novel control strategies. Journal of Proteomics, 73 (11). pp. 2267-2276.


Bumann, Dirk. (2009) System-level analysis of Salmonella metabolism during infection. Current Opinion in Microbiology, 12 (5). pp. 559-567.

Hänisch, J. and Ehinger, J. and Ladwein, M. and Rohde, M. and Derivery, E. and Bosse, T. and Steffen, A. and Bumann, D. and Misselwitz, B. and Hardt, W. D. and Gautreau, A. and Stradal, T. E. and Rottner, K.. (2009) Molecular dissection of Salmonella-induced membrane ruffling versus invasion. Cellular Microbiology, 12 (1). pp. 84-98.

de Buhr, M. F. and Hedrich, H. J. and Westendorf, A. M. and Obermeier, F. and Hofmann, C. and Zschemisch, N. H. and Buer, J. and Bumann, D. and Goyert, S. M. and Bleich, A.. (2009) Analysis of Cd14 as a genetic modifier of experimental inflammatory bowel disease (IBD) in mice. Inflammatory Bowel Diseases, 15 (12). pp. 1824-1836.

Bumann, D. and Behre, C. and Behre, K. and Herz, S. and Gewecke, B. and Gessner, J. E. and von Specht, B. U. and Baumann, U.. (2009) Systemic, nasal and oral live vaccines against Pseudomonas aeruginosa : a clinical trial of immunogenicity in lower airways of human volunteers. Vaccine, 28 (3). pp. 707-713.


Bumann, D.. (2008) Has nature already identified all useful antibacterial targets? Current Opinion in Microbiology, 11 (5). pp. 387-392.

Bumann, D. and Buss, L.. (2008) Nutritional physiology and colony form in Podocoryna carnea (Cnidaria: Hydrozoa). Invertebrate Biology, 127 (4). pp. 368-380.

Aebischer, T. and Bumann, D. and Epple, H. J. and Metzger, W. and Schneider, T. and Cherepnev, G. and Walduck, A. K. and Kunkel, D. and Moos, V. and Loddenkemper, C. and Jiadze, I. and Panasyuk, M. and Stolte, M. and Graham, D. Y. and Zeitz, M. and Meyer, T. F.. (2008) Correlation of T cell response and bacterial clearance in human volunteers challenged with Helicobacter pylori revealed by randomised controlled vaccination with Ty21a-based Salmonella vaccines. Gut, 57 (8). pp. 1065-1072.


Halle, S. and Bumann, D. and Herbrand, H. and Willer, Y. and Dahne, S. and Forster, R. and Pabst, O.. (2007) Solitary intestinal lymphoid tissue provides a productive port of entry for Salmonella enterica serovar Typhimurium. Infection and Immunity, 75 (4). pp. 1577-1585.

Kirchhoff, D. and Frentsch, M. and Leclerk, P. and Bumann, D. and Rausch, S. and Hartmann, S. and Thiel, A. and Scheffold, A.. (2007) Identification and isolation of murine antigen-reactive T cells according to CD154 expression. European Journal of Immunology, 37 (9). pp. 2370-2377.

Thone, F. and Schwanhausser, B. and Becker, D. and Ballmaier, M. and Bumann, D.. (2007) FACS-isolation of Salmonella-infected cells with defined bacterial load from mouse spleen. Journal of Microbiological Methods, 71 (3). pp. 220-224.

Bumann, D. and Valdivia, R. H.. (2007) Identification of host-induced pathogen genes by differential fluorescence induction reporter systems. Nature Protocols, 2 (4). pp. 770-777.


Rollenhagen, C. and Bumann, D.. (2006) Salmonella enterica highly expressed genes are disease specific. Infection and Immunity, 74 (3). pp. 1649-1660.

Becker, D. and Selbach, M. and Rollenhagen, C. and Ballmaier, M. and Meyer, T. F. and Mann, M. and Bumann, D.. (2006) Robust Salmonella metabolism limits possibilities for new antimicrobials. Nature, 440 (7082). pp. 303-307.


Sabarth, N. and Hurvitz, R. and Schmidt, M. and Zimny-Arndt, U. and Jungblut, P. R. and Meyer, T. F. and Bumann, D.. (2005) Identification of Helicobacter pylori surface proteins by selective proteinase K digestion and antibody phage display. Journal of Microbiological Methods, 62 (3). pp. 345-349.


Arnold, H. and Bumann, D. and Felies, M. and Gewecke, B. and Sorensen, M. and Gessner, J. E. and Freihorst, J. and von Specht, B. U. and Baumann, U.. (2004) Enhanced immunogenicity in the murine airway mucosa with an attenuated Salmonella live vaccine expressing OprF-OprI from Pseudomonas aeruginosa. Infection and Immunity, 72 (11). pp. 6546-6553.

Bumann, D. and Habibi, H. and Kan, B. and Schmid, M. and Goosmann, C. and Brinkmann, V. and Meyer, T. F. and Jungblut, P. R.. (2004) Lack of stage-specific proteins in coccoid Helicobacter pylori cells. Infection and Immunity, 72 (11). pp. 6738-6742.

Bumann, D. and Jungblut, P. R. and Meyer, T. F.. (2004) Helicobacter pylori vaccine development based on combined subproteome analysis. Proteomics, 4 (10). pp. 2843-2848.

Metzger, W. G. and Mansouri, E. and Kronawitter, M. and Diescher, S. and Soerensen, M. and Hurwitz, R. and Bumann, D. and Aebischer, T. and Von Specht, B. -U. and Meyer, T. F.. (2004) Impact of vector-priming on the immunogenicity of a live recombinant Salmonella enterica serovar typhi Ty21a vaccine expressing urease A and B from Helicobacter pylori in human volunteers. Vaccine, 22 (17-18). pp. 2273-2277.

Rollenhagen, C. and Sorensen, M. and Rizos, K. and Hurvitz, R. and Bumann, D.. (2004) Antigen selection based on expression levels during infection facilitates vaccine development for an intracellular pathogen. Proceedings of the National Academy of Sciences of the United States of America, 101 (23). pp. 8739-8744.


Daugelat, S. and Kowall, J. and Mattow, J. and Bumann, D. and Winter, R. and Hurwitz, R. and Kaufmann, S. H. E.. (2003) The RD1 proteins of Mycobacterium tuberculosis : expression in Mycobacterium smegmatis and biochemical characterization. Microbes and Infection, 5 (12). pp. 1082-1095.

Rizos, K. and Lattemann, C. T. and Bumann, D. and Meyer, T. F. and Aebischer, T.. (2003) Autodisplay : efficacious surface exposure of antigenic UreA fragments from Helicobacter pylori in Salmonella vaccine strains. Infection and Immunity, 71 (11). pp. 6320-6328.

Sorensen, M. and Lippuner, C. and Kaiser, T. and Misslitz, A. and Aebischer, T. and Bumann, D.. (2003) Rapidly maturing red fluorescent protein variants with strongly enhanced brightness in bacteria. FEBS Letters, 552 (2-3). pp. 110-114.

Bumann, D.. (2003) T cell receptor-transgenic mouse models for studying cellular immune responses to Salmonella in vivo. FEMS Immunology and Medical Microbiology, 37 (2-3). pp. 105-109.

Bumann, D. and Jungblut, P. R. and Meyer, T. F.. (2003) Helicobacter vaccine development based on global approaches. Genome Letters, 2 (1-2). pp. 94-98.


Bumann, D.. (2002) Examination of Salmonella gene expression in an infected mammalian host using the green fluorescent protein and two-colour flow cytometry. Molecular Microbiology, 43 (5). pp. 1269-1283.

Bumann, D. and Aksu, S. and Wendland, M. and Janek, K. and Zimny-Arndt, U. and Sabarth, N. and Meyer, T. F. and Jungblut, P. R.. (2002) Proteome analysis of secreted proteins of the gastric pathogen Helicobacter pylori. Infection and Immunity, 70 (7). pp. 3396-3403.

Bumann, D. and Holland, P. and Siejak, F. and Koesling, J. and Sabarth, N. and Lamer, S. and Zimny-Arndt, U. and Jungblut, P. R. and Meyer, T. F.. (2002) A comparison of murine and human immunoproteomes of Helicobacter pylori validates the preclinical murine infection model for antigen screening. Infection and Immunity, 70 (11). pp. 6494-6498.

Sabarth, N. and Lamer, S. and Zimny-Arndt, U. and Jungblut, P. R. and Meyer, T. F. and Bumann, D.. (2002) Identification of surface proteins of Helicobacter pylori by selective biotinylation, affinity purification, and two-dimensional gel electrophoresis. Journal of Biological Chemistry, 277 (31). pp. 27896-27902.

Wendland, M. and Bumann, D.. (2002) Optimization of GFP levels for analyzing Salmonella gene expression during an infection. FEBS Letters, 521 (1-3). pp. 105-108.

Sabarth, N. and Hurwitz, R. and Meyer, T. F. and Bumann, D.. (2002) Multiparameter selection of Helicobacter pylori antigens identifies two novel antigens with high protective efficacy. Infection and Immunity, 70 (11). pp. 6499-6503.

Jungblut, Peter R. and Bumann, Dirk. (2002) Immunoproteome of Helicobacter pylori. Methods in Enzymology, 358. pp. 307-316.


Bumann, D.. (2001) Regulated antigen expression in live recombinant Salmonella enterica serovar Typhimurium strongly affects colonization capabilities and specific CD4(+)-T-cell responses. Infection and Immunity, 69 (12). pp. 7493-7500.

Bumann, D.. (2001) In vivo visualization of bacterial colonization, antigen expression, and specific T-cell induction following oral administration of live recombinant Salmonella enterica serovar Typhimurium. Infection and Immunity, 69 (7). pp. 4618-4626.

Bumann, D. and Metzger, W. G. and Mansouri, E. and Palme, O. and Wendland, M. and Hurwitz, R. and Haas, G. and Aebischer, T. and von Specht, B. U. and Meyer, T. F.. (2001) Safety and immunogenicity of live recombinant Salmonella enterica serovar Typhi Ty21a expressing urease A and B from Helicobacter pylori in human volunteers. Vaccine, 20 (5-6). pp. 845-852.

Lucas, B. and Bumann, D. and Walduck, A. and Koesling, J. and Develioglu, L. and Meyer, T. F. and Aebischer, T.. (2001) Adoptive transfer of CD4+ T cells specific for subunit A of Helicobacter pylori urease reduces H. pylori stomach colonization in mice in the absence of interleukin-4 (IL-4)/IL-13 receptor signaling. Infection and Immunity, 69 (3). pp. 1714-1721.


Aebischer, T. and Lucas, B. and Koesling, J. and Bumann, D. and Meyer, T. F.. (2000) How CD4(+) T cells may eliminate extracellular gastric Helicobacter? Journal of Biotechnology, 83 (1-2). pp. 77-84.

Bumann, D. and Hueck, C. and Aebischer, T. and Meyer, T. F.. (2000) Recombinant live Salmonella spp. for human vaccination against heterologous pathogens. FEMS Immunology and Medical Microbiology, 27 (4). pp. 357-364.

Jungblut, P. R. and Bumann, D. and Haas, G. and Zimny-Arndt, U. and Holland, P. and Lamer, S. and Siejak, F. and Aebischer, A. and Meyer, T. F.. (2000) Comparative proteome analysis of Helicobacter pylori. Molecular Microbiology, 36 (3). pp. 710-725.


Gomez-Duarte, O. G. and Bumann, D. and Meyer, T. F.. (1999) The attenuated Salmonella vaccine approach for the control of Helicobacter pylori-related diseases. Vaccine, 17 (13-14). pp. 1667-1673.


Bumann, D. and Puls, G.. (1997) The ctenophore Mnemiopsis leidyi has a flow-through system for digestion with three consecutive phases of extracellular digestion. Physiological Zoology, 70 (1). pp. 1-6.


Bumann, D. and Oesterhelt, D.. (1995) Destruction of a single chlorophyll is correlated with the photoinhibition of photosystem II with a transiently inactive donor side. Proceedings of the National Academy of Sciences of the United States of America, 92 (26). pp. 12195-12199.


Bumann, D. and Oesterhelt, D.. (1994) Purification and characterization of oxygen-evolving photosystem II core complexes from the green alga Chlamydomonas reinhardtii. Biochemistry, 33 (36). pp. 10906-10910.