Items where Division is "05 Faculty of Science > Departement Umweltwissenschaften > Botanik > Pflanzenphysiologie Pathogenabwehr (Boller)"

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Calabrese, Silvia and Kohler, Annegret and Niehl, Annette and Veneault-Fourrey, Claire and Boller, Thomas and Courty, Pierre-Emmanuel. (2017) Transcriptome analysis of the Populus trichocarpa-Rhizophagus irregularis Mycorrhizal Symbiosis: Regulation of Plant and Fungal Transportomes under Nitrogen Starvation. Plant & Cell Physiology, 58 (6). pp. 1003-1017.

Golyaev, Victor. The role of viral effector proteins in suppression of plant antiviral defenses based on RNA silencing and innate immunity. 2017, Doctoral Thesis, University of Basel, Faculty of Science.

Koegel, Sally and Mieulet, Delphine and Baday, Sefer and Chatagnier, Odile and Lehmann, Moritz F. and Wiemken, Andres and Boller, Thomas and Wipf, Daniel and Bernèche, Simon and Guiderdoni, Emmanuel and Courty, Pierre-Emmanuel. (2017) Phylogenetic, structural, and functional characterization of AMT3;1, an ammonium transporter induced by mycorrhization among model grasses. Mycorrhiza, 27 (7). pp. 695-708.

Nachelli Malpica López, Hortensia. Revisiting the roles of replicase complex proteins in tobamovirus replication and suppression of RNA silencing. 2017, Doctoral Thesis, University of Basel, Faculty of Science.

Poncini, Lorenzo and Wyrsch, Ines and Dénervaud Tendon, Valérie and Vorley, Thomas and Boller, Thomas and Geldner, Niko and Métraux, Jean-Pierre and Lehmann, Silke. (2017) In roots of Arabidopsis thaliana, the damage-associated molecular pattern AtPep1 is a stronger elicitor of immune signalling than flg22 or the chitin heptamer. PLoS ONE, 12 (10). e0185808.

Scheifele, Michael and Hobi, Andrea and Buegger, Franz and Gattinger, Andreas and Schulin, Rainer and Boller, Thomas and Maeder, Paul. (2017) Impact of pyrochar and hydrochar on soybean (Glycine max L.) root nodulation and biological nitrogen fixation. Journal of Plant Nutrition and Soil Science, 180 (2). pp. 199-211.

Schütz, Lukas. Microbial inoculants : global reliability and specific application in a mixed cropping system on marginal land in India. 2017, Doctoral Thesis, University of Basel, Faculty of Science.

Symanczik, Sarah and Gisler, Michelle and Thonar, Cécile and Schlaeppi, Klaus and Van der Heijden, Marcel and Kahmen, Ansgar and Boller, Thomas and Mäder, Paul. (2017) Application of Mycorrhiza and Soil from a Permaculture System Improved Phosphorus Acquisition in Naranjilla. Frontiers in Plant Science, 8. p. 1263.

Thieme, Michael. Stress-induced mobilization of retrotransposons for plant breeding. 2017, Doctoral Thesis, University of Basel, Faculty of Science.

Turco, Silvia. siRomics for universal diagnostics of plant viral disease and virus diversity studies. 2017, Doctoral Thesis, University of Basel, Faculty of Science.


Ait Lahmidi, Nassima and Courty, Pierre-Emmanuel and Brulé, Daphnée and Chatagnier, Odile and Arnould, Christine and Doidy, Joan and Berta, Graziella and Lingua, Guido and Wipf, Daniel and Bonneau, Laurent. (2016) Sugar exchanges in arbuscular mycorrhiza: RiMST5 and RiMST6, two novel Rhizophagus irregularis monosaccharide transporters, are involved in both sugar uptake from the soil and from the plant partner. Plant Physiology and Biochemistry , 107. pp. 354-363.

Calabrese, Silvia. Nutrient transport in the arbuscular mycorrhizal symbiosis : the regulation of nutrient transporters in Rhizophagus irregularis and its host plants populus trichocarpa and sorghum bicolor. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Calabrese, Silvia and Pérez-Tienda, Jacob and Ellerbeck, Matthias and Arnould, Christine and Chatagnier, Odile and Boller, Thomas and Schüßler, Arthur and Brachmann, Andreas and Wipf, Daniel and Ferrol, Nuria and Courty, Pierre-Emmanuel. (2016) GintAMT3 - a Low-Affinity Ammonium Transporter of the Arbuscular Mycorrhizal Rhizophagus irregularis. Frontiers in Plant Science, 7. p. 679.

Fuentes, Alejandro and Carlos, Natacha and Ruiz, Yoslaine and Callard, Danay and Sánchez, Yadira and Ochagavía, María Elena and Seguin, Jonathan and Malpica-López, Nachelli and Hohn, Thomas and Lecca, Maria Rita and Pérez, Rosabel and Doreste, Vivian and Rehrauer, Hubert and Farinelli, Laurent and Pujol, Merardo and Pooggin, Mikhail M.. (2016) Field Trial and Molecular Characterization of RNAi-Transgenic Tomato Plants That Exhibit Resistance to Tomato Yellow Leaf Curl Geminivirus. Molecular Plant-Microbe Interactions, 29 (3). pp. 197-209.

Hander, Tim. AtPeps as danger signals in arabidopsis - their release from PROPEP proteins by highly specific metacaspases. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Karthikeyan, Chockalingam and Patil, Basavaprabhu L. and Borah, Basanta K. and Resmi, Thulasi R. and Turco, Silvia and Pooggin, Mikhail M. and Hohn, Thomas and Veluthambi, Karuppannan. (2016) Emergence of a Latent Indian Cassava Mosaic Virus from Cassava Which Recovered from Infection by a Non-Persistent Sri Lankan Cassava Mosaic Virus. Viruses, 8 (10). p. 264.

Klauser, Dominik and Flury, Pascale and Boller, Thomas and Merker, Sebastian. (2016) Looking BAK again: Is an old acquaintance of innate immunity involved in the detection of herbivores? Plant Signaling & Behavior, 11 (11). e1252014.

Mbengue, Malick and Bourdais, Gildas and Gervasi, Fabio and Beck, Martina and Zhou, Ji and Spallek, Thomas and Bartels, Sebastian and Boller, Thomas and Ueda, Takashi and Kuhn, Hannah and Robatzek, Silke. (2016) Clathrin-dependent endocytosis is required for immunity mediated by pattern recognition receptor kinases. Proceedings of the National Academy of Sciences of the United States of America, 113 (39). pp. 11034-11039.

Mosimann, Carla and Oberhänsli, Thomas and Ziegler, Dominik and Nassal, Dinah and Kandeler, Ellen and Boller, Thomas and Mäder, Paul and Thonar, Cécile. (2016) Tracing of Two Pseudomonas Strains in the Root and Rhizoplane of Maize, as Related to Their Plant Growth-Promoting Effect in Contrasting Soils. Frontiers in Microbiology, 7. p. 2150.

Niehl, Annette and Wyrsch, Ines and Boller, Thomas and Heinlein, Manfred. (2016) Double-stranded RNAs induce a pattern-triggered immune signaling pathway in plants. New Phytologist, 211 (3). pp. 1008-1019.

Safaeizadeh, Mehdi. Functional genomic studies of novel players in innate immunity and classification of promoter activation patterns of the AtPROPEP genes and their corresponding receptors in the model plant : "arabidopsis thaliana". 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Seguin, Jonathan and Otten, Patricia and Baerlocher, Loïc and Farinelli, Laurent and Pooggin, Mikhail M.. (2016) MISIS-2: A bioinformatics tool for in-depth analysis of small RNAs and representation of consensus master genome in viral quasispecies. Journal of Virological Methods, 233. pp. 37-40.

Walder, Florian and Boller, Thomas and Wiemken, Andres and Courty, Pierre-Emmanuel. (2016) Regulation of plants' phosphate uptake in common mycorrhizal networks: Role of intraradical fungal phosphate transporters. Plant Signaling & Behavior, 11 (2). e1131372.

Zvereva, Anna S. and Golyaev, Victor and Turco, Silvia and Gubaeva, Ekaterina G. and Rajeswaran, Rajendran and Schepetilnikov, Mikhail V. and Srour, Ola and Ryabova, Lyubov A. and Boller, Thomas and Pooggin, Mikhail M.. (2016) Viral protein suppresses oxidative burst and salicylic acid-dependent autophagy and facilitates bacterial growth on virus-infected plants. New Phytologis, 211 (3). pp. 1020-1034.

November 2015

Symanczik, Sarah and Courty, Pierre-Emmanuel and Boller, Thomas and Wiemken, Andres and Al-Yahya'ei, Mohamed N.. (2015) Impact of water regimes on an experimental community of four desert arbuscular mycorrhizal fungal (AMF) species, as affected by the introduction of a non-native AMF species. Mycorrhiza, 25 (8). pp. 639-647.

August 2015

Klauser, Dominik and Desurmont, Gaylord A. and Glauser, Gaétan and Vallat, Armelle and Flury, Pascale and Boller, Thomas and Turlings, Ted C. J. and Bartels, Sebastian. (2015) The Arabidopsis Pep-PEPR system is induced by herbivore feeding and contributes to JA-mediated plant defence against herbivory. Journal of experimental botany, 66 (17). pp. 5327-5336.

July 2015

Cohen, Yigal and Van den Langenberg, Kyle M. and Wehner, Todd C. and Ojiambo, Peter S. and Hausbeck, Mary and Quesada-Ocampo, Lina M. and Lebeda, Ales and Sierotzki, Helge and Gisi, Ulrich. (2015) Resurgence of Pseudoperonospora cubensis: the Causal Agent of Cucurbit Downy Mildew. Phytopathology, 105 (7). pp. 998-1012.

Derelle, Damien and Courty, Pierre-Emmanuel and Dajoz, Isabelle and Declerck, Stéphane and van Aarle, Ingrid M. and Carmignac, David and Genet, Patricia. (2015) Plant identity and density can influence arbuscular mycorrhizal fungi colonization, plant growth, and reproduction investment in coculture. Botany, 93 (7). pp. 405-412.

Domínguez-Ferreras, Ana and Kiss-Papp, Marta and Jehle, Anna Kristina and Felix, Georg and Chinchilla, Delphine. (2015) An Overdose of the Arabidopsis Coreceptor BRASSINOSTEROID INSENSITIVE1-ASSOCIATED RECEPTOR KINASE1 or Its Ectodomain Causes Autoimmunity in a SUPPRESSOR OF BIR1-1-Dependent Manner. Plant physiology, 168 (3). pp. 1106-1121.

10 June 2015

Hohn, Thomas. (2015) RNA based viral silencing suppression in plant pararetroviruses. Frontiers in Plant Science, 6. p. 398.

1 June 2015

Courty, Pierre-Emmanuel and Smith, Penelope and Koegel, Sally and Redecker, Dirk and Wipf, Daniel. (2015) Inorganic Nitrogen Uptake and Transport in Beneficial Plant Root-Microbe Interactions. Critical Reviews in Plant Sciences, 34 (1/3). pp. 4-16.

May 2015

Heinlein, Manfred. (2015) Plant virus replication and movement. Virology, 479. pp. 657-671.

Resmi, Thulasi Raveendrannair and Hohn, Thomas and Hohn, Barbara and Veluthambi, Karuppannan. (2015) The Agrobacterium tumefaciens Ti Plasmid Virulence Gene virE2 Reduces Sri Lankan Cassava Mosaic Virus Infection in Transgenic Nicotiana benthamiana Plants. Viruses, 7 (5). pp. 2641-2653.

23 January 2015

Shivaprasad, Padubidri V. and Hohn, Thomas and Akbergenov, Rashid. (2015) Biochemical Requirements for Two Dicer-Like Activities from Wheat Germ. PLoS ONE, 10 (1). e0116736.


Bartels, Sebastian and Boller, Thomas. (2015) Quo vadis, Pep? Plant elicitor peptides at the crossroads of immunity, stress and development. Journal of experimental botany, Vol. 66, no. 17. pp. 5183-5193.

Boycheva, Svetlana and Dominguez, Ana and Rolcik, Jakub and Boller, Thomas and Fitzpatrick, Teresa B.. (2015) Consequences of a deficit in vitamin B6 biosynthesis de novo for hormone homeostasis and root development in Arabidopsis. Plant physiology, Vol. 167, H. 1. pp. 102-117.

Gully, Kay and Hander, Tim and Boller, Thomas and Bartels, Sebastian. (2015) Perception of Arabidopsis AtPep peptides, but not bacterial elicitors, accelerates starvation-induced senescence. Frontiers in plant science, Vol. 6, H. 14. p. 10.

Heinlein, Manfred. (2015) Plasmodesmata: Channels for Viruses on the Move. In: Plasmodesmata: Methods and Protocols. New York, pp. 25-52.

Hristova, Emilia. The nuclear pore complex : its role in chromatin structure and RNA export. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Hristova, Emilija and Fal, Kateryna and Klemme, Laurin and Windels, David and Bucher, Etienne. (2015) HISTONE DEACETYLASE6 Controls Gene Expression Patterning and DNA Methylation-Independent Euchromatic Silencing. Plant Physiology , 168 (4). pp. 1298-1308.

Lori, Martina and van Verk, Marcel C. and Hander, Tim and Schatowitz, Hendrik and Klauser, Dominik and Flury, Pascale and Gehring, Christoph A. and Boller, Thomas and Bartels, Sebastian. (2015) Evolutionary divergence of the plant elicitor peptides (Peps) and their receptors : interfamily incompatibility of perception but compatibility of downstream signalling. Journal of experimental botany, Vol. 66, no. 17. pp. 5315-5325.

Peña, Eduardo J. and Heinlein, Manfred and Sambade, Adrian. (2015) In Vivo RNA Labeling Using MS2. In: Plasmodesmata: Methods and Protocols. New York, pp. 329-341.

Rüegg, Thomas Lawrence. A gene pair from the jungle : discovery, characterization and applications of the Enterobacter lignolyticus Eil-Efflux system. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Walder, Florian and Brulé, Daphnée and Koegel, Sally and Wiemken, Andres and Boller, Thomas and Courty, Pierre-Emmanuel. (2015) Plant phosphorus acquisition in a common mycorrhizal network : regulation of phosphate transporter genes of the Pht1 family in sorghum and flax. The new phytologist, Vol. 205, H. 4. pp. 1632-1645.

Wyrsch, Ines. Immune signaling in arabidopsis thaliana upon perception of bacterial and viral molecular patterns with a special emphasis on roots. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Wyrsch, Ines and Domínguez-Ferreras, Ana and Geldner, Niko and Boller, Thomas. (2015) Tissue-specific FLAGELLIN-SENSING 2 (FLS2) expression in roots restores immune responses in Arabidopsis fls2 mutants. The new phytologist, Vol. 206, H. 2. pp. 774-784.

December 2014

Beck, Martina and Wyrsch, Ines and Strutt, James and Wimalasekera, Rinukshi and Webb, Alex and Boller, Thomas and Robatzek, Silke. (2014) Expression patterns of FLAGELLIN SENSING 2 map to bacterial entry sites in plant shoots and roots. Journal of experimental botany, 65 (22). pp. 6487-6498.


Amari, Khalid and Di Donato, Martin and Dolja, Valerian V. and Heinlein, Manfred. (2014) Myosins VIII and XI Play Distinct Roles in Reproduction and Transport of Tobacco Mosaic Virus. PLoS Pathogens, Vol. 10, H. 10 , e1004448.

Derrien, D. and Plain, C. and Courty, P. E. and Gelhaye, L. and Moerdijk-Poortvliet, T. C. W. and Thomas, F. and Versini, A. and Zeller, B. and Koutika, L. S. and Boschker, H. T. S. and Epron, D.. (2014) Does the addition of labile substrate destabilise old soil organic matter? Soil biology & biochemistry, Vol. 76. pp. 149-160.

Fal, Kateryna. Splayed : a chromatin remodeler regulating tissue specific gene silencing and developmental timing. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Gallardo, Karine and Courty, Pierre-Emmanuel and Le Signor, Christine and Wipf, Daniel and Vernoud, Vanessa. (2014) Sulfate transporters in the plant's response to drought and salinity: regulation and possible functions. Frontiers in plant science, Vol. 5. p. 580.

Gupta, R. and Mathimaran, N. and Wiemken, A. and Boller, T. and Bisaria, V. S. and Sharma, S.. (2014) Non-target effects of bioinoculants on rhizospheric microbial communities of Cajanus cajan. Applied soil ecology, Vol. 76. pp. 26-33.

Halter, Thierry and Imkampe, Julia and Mazzotta, Sara and Wierzba, Michael and Postel, Sandra and Bücherl, Christoph and Kiefer, Christian and Stahl, Mark and Chinchilla, Delphine and Wang, Xiaofeng and Nürnberger, Thorsten and Zipfel, Cyril and Clouse, Steven and Borst, Jan Willem and Boeren, Sjef and de Vries, Sacco C. and Tax, Frans and Kemmerling, Birgit. (2014) The Leucine-Rich Repeat Receptor Kinase BIR2 Is a Negative Regulator of BAK1 in Plant Immunity. Current biology, Vol. 24, H. 2. pp. 134-143.

Jose Iglesias, Maria and Cecilia Terrile, Maria and Windels, David and Cristina Lombardo, Maria and Guillermo Bartoli, Carlos and Vazquez, Franck and Estelle, Mark and Anahi Casalongue, Claudia. (2014) MiR393 Regulation of Auxin Signaling and Redox-Related Components during Acclimation to Salinity in Arabidopsis. PLoS ONE, Vol. 9, H. 9 , e107678.

Kiss-Papp, Márta. The role of BRI1-associated kinase 1 (BAK1) in the regulation of plant innate immunity : functional and genetic characterization of BAK1 overexpression in Arabidopsis thaliana. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Klauser, Dominik Roman. An endogenous danger detection system in "Arabidopsis thaliana": the AtPep peptides and their receptors. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Krajinski, F. and Courty, P. E. and Sieh, D. and Franken, P. and Zhang, H. Q. and Bucher, M. and Gerlach, N. and Kryvoruchko, I. and Zoeller, D. and Udvardi, M. and Hause, B.. (2014) The H+-ATPase HA1 of Medicago truncatula Is Essential for Phosphate Transport and Plant Growth during Arbuscular Mycorrhizal Symbiosis. The plant cell, Vol. 26, H. 4. pp. 1808-1817.

Kørner, Camilla Julie. Defense pathways in Arabidopsis restricting compatible tobamoviruses during infection. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Niehl, A. and Pasquier, A. and Ferriol, I. and Mely, Y. and Heinlein, M.. (2014) Comparison of the Oilseed rape mosaic virus and Tobacco mosaic virus movement proteins (MP) reveals common and dissimilar MP functions for tobamovirus spread. Virology, Vol. 456. pp. 43-54.

Pena, E. J. and Ferriol, I. and Sambade, A. and Buschmann, H. and Niehl, A. and Elena, S. F. and Rubio, L. and Heinlein, M.. (2014) Experimental Virus Evolution Reveals a Role of Plant Microtubule Dynamics and TORTIFOLIA1/SPIRAL2 in RNA Trafficking. PLoS ONE, Vol. 9, H. 8 , e105364.

Rajeswaran, Rajendran and Golyaev, Victor and Seguin, Jonathan and Zvereva, Anna S. and Farinelli, Laurent and Pooggin, Mikhail M.. (2014) Interactions of rice tungro bacilliform pararetrovirus and its protein P4 with plant RNA silencing machinery. Molecular plant-microbe interactions, Vol. 27, H. 12. pp. 1370-1378.

Rajeswaran, Rajendran and Seguin, Jonathan and Chabannes, Matthieu and Duroy, Pierre-Olivier and Laboureau, Nathalie and Farinelli, Laurent and Iskra-Caruana, Marie-Line and Pooggin, Mikhail. (2014) Evasion of siRNA-directed antiviral silencing in Musa acuminata persistently infected with six distinct banana streak pararetroviruses. Journal of virology, Vol. 88, H. 19. pp. 11516-11528.

Rajeswaran, Rajendran and Seguin, Jonathan and Chabannes, Matthieu and Duroy, Pierre-Olivier and Laboureau, Nathalie and Farinelli, Laurent and Iskra-Caruana, Marie-Line and Pooggin, Mikhail M.. (2014) Evasion of Short Interfering RNA-Directed Antiviral Silencing in Musa acuminata Persistently Infected with Six Distinct Banana Streak Pararetroviruses. Journal of virology, Vol. 88, H. 19. pp. 11516-11528.

Seguin, Jonathan. Next generation sequencing for studying viruses and RNA silencing-based antiviral defense in crop plants. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Seguin, Jonathan and Otten, Patricia and Baerlocher, Loic and Farinelli, Laurent and Pooggin, Mikhail M.. (2014) MISIS: A bioinformatics tool to view and analyze maps of small RNAs derived from viruses and genomic loci generating multiple small RNAs. Journal of virological methods, Vol. 195. pp. 120-122.

Seguin, Jonathan and Rajeswaran, Rajendran and Malpica-López, Nachelli and Martin, Robert R. and Kasschau, Kristin and Dolja, Valerian V. and Otten, Patricia and Farinelli, Laurent and Pooggin, Mikhail M.. (2014) De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs. PLoS ONE, Vol. 9, H. 2 , e88513.

Symanczik, Sarah and Blaszkowski, Janusz and Koegel, Sally and Boller, Thomas and Wiemken, Andres and Al-Yahya'ei, Mohamed N.. (2014) Isolation and identification of desert habituated arbuscular mycorrhizal fungi newly reported from the Arabian Peninsula. Journal of arid land, Vol. 6, H. 4. pp. 488-497.

Tateda, Chika and Zhang, Zhongqin and Shrestha, Jay and Jelenska, Joanna and Chinchilla, Delphine and Greenberg, Jean T.. (2014) Salicylic Acid Regulates Arabidopsis Microbial Pattern Receptor Kinase Levels and Signaling. The plant cell, Vol. 26, H. 10. pp. 4171-4187.

Walder, Florian. Common arbuscular mycorrhizal networks : trade of carbon and soil nutrients between different plant species and their shared fungal symbiont. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Windels, D. and Bielewicz, D. and Ebneter, M. and Jarmolowski, A. and Szweykowska-Kulinska, Z. and Vazquez, F.. (2014) miR393 Is Required for Production of Proper Auxin Signalling Outputs. PLoS ONE, Vol. 9, H. 4 , e95972.

Yguel, Benjamin and Courty, Pierre-Emmanuel and Jactel, Herve and Pan, Xu and Butenschoen, Olaf and Murray, Phil J. and Prinzing, Andreas. (2014) Mycorrhizae support oaks growing in a phylogenetically distant neighbourhood. Soil biology & biochemistry, Vol. 78. pp. 204-212.


Albert, Markus and Jehle, Anna Kristina and Fürst, Ursula and Chinchilla, Delphine and Boller, Thomas and Felix, Georg. (2013) A two-hybrid-receptor assay demonstrates heteromer formation as switch-on for plant immune receptors. Plant physiology, Vol. 163, H. 4. pp. 1504-1509.

Amari, Khalid and Vazquez, Franck. (2013) Changing the accumulation pattern of microRNAs in plants during infection of the tobacco mosaic virus. Virologie, Vol. 17, H. 2. pp. 88-95.

Bahram, Mohammad and Koljalg, Urmas and Courty, Pierre-Emmanuel and Diedhiou, Abdala G. and Kjoller, Rasmus and Polme, Sergei and Ryberg, Martin and Veldre, Vilmar and Tedersoo, Leho. (2013) The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales. Journal of ecology, Vol. 101, H. 5. pp. 1335-1344.

Bartels, Sebastian and Lori, Martina and Mbengue, Malick and van Verk, Marcel and Klauser, Dominik and Hander, Tim and Böni, Rainer and Robatzek, Silke and Boller, Thomas. (2013) The family of Peps and their precursors in Arabidopsis : differential expression and localization but similar induction of pattern-triggered immune responses. Journal of experimental botany, Vol. 64, no. 17. pp. 5309-5321.

Bielewicz, Dawid and Kalak, Malgorzata and Kalyna, Maria and Windels, David and Barta, Andrea and Vazquez, Franck and Szweykowska-Kulinska, Zofia and Jarmolowski, Artur. (2013) Introns of plant pri-miRNAs enhance miRNA biogenesis. EMBO reports, Vol. 14, H. 7. pp. 622-628.

Breda, Nathalie and Maillard, Pascale and Montpied, Pierre and Brechet, Claude and Garbaye, Jean and Courty, Pierre-Emmanuel. (2013) Isotopic evidence in adult oak trees of a mixotrophic lifestyle during spring reactivation. Soil biology & biochemistry, Vol. 58. pp. 136-139.

Casieri, Leonardo and Lahmidi, Nassima Ait and Doidy, Joan and Veneault-Fourrey, Claire and Migeon, Aude and Bonneau, Laurent and Courty, Pierre-Emmanuel and Garcia, Kevin and Charbonnier, Maryse and Delteil, Amandine and Brun, Annick and Zimmermann, Sabine and Plassard, Claude and Wipf, Daniel. (2013) Biotrophic transportome in mutualistic plant-fungal interactions. Mycorrhiza, Vol. 23, H. 8. pp. 597-625.

Clarke, Christopher R. and Chinchilla, Delphine and Hind, Sarah R. and Taguchi, Fumiko and Miki, Ryuji and Ichinose, Yuki and Martin, Gregory B. and Leman, Scotland and Felix, Georg and Vinatzer, Boris A.. (2013) Allelic variation in two distinct Pseudomonas syringae flagellin epitopes modulates the strength of plant immune responses but not bacterial motility. New phytologist, Vol. 200, H. 3. pp. 847-860.

Cohen, David and Bogeat-Triboulot, Marie-Beatrice and Vialet-Chabrand, Silvere and Merret, Remy and Courty, Pierre-Emmanuel and Moretti, Sebastien and Bizet, Francois and Guilliot, Agnes and Hummel, Irene. (2013) Developmental and Environmental Regulation of Aquaporin Gene Expression across Populus Species: Divergence or Redundancy? PLoS ONE, Vol. 8, H. 2 , e55506.

Flury, Pascale and Klauser, Dominik and Schulze, Birgit and Boller, Thomas and Bartels, Sebastian. (2013) The anticipation of danger: microbe-associated molecular pattern perception enhances AtPep-triggered oxidative burst. Plant physiology, Vol. 161, H. 4. pp. 2023-2035.

Hann, Dagmar R. and Domínguez-Ferreras, Ana and Motyka, Vaclav and Dobrev, Petre I. and Schornack, Sebastian and Jehle, Anna and Felix, Georg and Chinchilla, Delphine and Rathjen, John P. and Boller, Thomas. (2013) The Pseudomonas type III effector HopQ1 activates cytokinin signaling and interferes with plant innate immunity. New phytologist, Vol. 201, H. 2 , S. 585–598.

Herranz, M. C. and Niehl, A. and Rosales, M. and Fiore, N. and Zamorano, A. and Granell, A. and Pallas, V.. (2013) A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by prunus necrotic ringspot virus and peach latent mosaic viroid. Virology journal, Vol. 10. p. 164.

Klauser, Dominik and Flury, Pascale and Boller, Thomas and Bartels, Sebastian. (2013) Several MAMPs, including chitin fragments, enhance AtPep-triggered oxidative burst independently of wounding. Plant signaling & behavior, Vol. 8, H. 9 , e25346.

Koegel, Sally. Ammonium transporters in grasses : molecular and functional characterization with special reference to the arbuscular mycorrhizal symbiosis. 2013, Doctoral Thesis, University of Basel, Faculty of Science.

Koegel, Sally and Ait Lahmidi, Nassima and Arnould, Christine and Chatagnier, Odile and Walder, Florian and Ineichen, Kurt and Boller, Thomas and Wipf, Daniel and Wiemken, Andres and Courty, Pierre-Emmanuel. (2013) The family of ammonium transporters (AMT) in Sorghum bicolor : two AMT members are induced locally, but not systemically in roots colonized by arbuscular mycorrhizal fungi. The new phytologist, Vol. 198, H. 3. pp. 853-865.

Kørner, Camilla Julie and Klauser, Dominik and Niehl, Annette and Domínguez-Ferreras, Ana and Chinchilla, Delphine and Boller, Thomas and Heinlein, Manfred and Hann, Dagmar. (2013) The immunity regulator BAK1 contributes to resistance against diverse RNA viruses. Molecular plant-microbe interactions, Vol. 26, H. 11. pp. 1271-1280.

Meyer, Joana Beatrice and Song-Wilson, Yi and Foetzki, Andrea and Luginbuehl, Carolin and Winzeler, Michael and Kneubuehler, Yvan and Matasci, Caterina and Mascher-Frutschi, Fabio and Kalinina, Olena and Boller, Thomas and Keel, Christoph and Maurhofer, Monika. (2013) Does Wheat Genetically Modified for Disease Resistance Affect Root-Colonizing Pseudomonads and Arbuscular Mycorrhizal Fungi? PLoS ONE, 8 (1). e53825.

Muller, Kerstin and Levesque-Tremblay, Gabriel and Bartels, Sebastian and Weitbrecht, Karin and Wormit, Alexandra and Usadel, Bjoern and Haughn, George and Kermode, Allison R.. (2013) Demethylesterification of Cell Wall Pectins in Arabidopsis Plays a Role in Seed Germination. Plant physiology, Vol. 161, H. 1. pp. 305-316.

Müller, Kerstin and Levesque-Tremblay, Gabriel and Fernandes, Anwesha and Wormit, Alexandra and Bartels, Sebastian and Usadel, Bjoern and Kermode, Allison. (2013) Overexpression of a pectin methylesterase inhibitor in Arabidopsis thaliana leads to altered growth morphology of the stem and defective organ separation. Plant signaling & behavior, Vol. 8, H. 12 , e26464.

Niehl, Annette and Peña, Eduardo J. and Amari, Khalid and Heinlein, Manfred. (2013) Microtubules in viral replication and transport. The plant journal, Vol. 75, H. 2. pp. 290-308.

Niehl, Annette and Zhang, Zhe Jenny and Kuiper, Martin and Peck, Scott C. and Heinlein, Manfred. (2013) Label-Free Quantitative Proteomic Analysis of Systemic Responses to Local Wounding and Virus Infection in Arabidopsis thaliana. Journal of Proteome Research, Vol. 12, H. 6. pp. 2491-2503.

Peña, Eduardo José and Heinlein, Manfred. (2013) Cortical microtubule-associated ER sites: organization centers of cell polarity and communication. Current opinion in plant biology, Vol. 16, H. 6 , S. 764–773.

Pooggin, Mikhail. (2013) How can plant DNA viruses evade siRNA-directed DNA methylation and silencing? International journal of molecular sciences, Vol. 14, H. 8. pp. 15233-15259.

Robles Luna, Gabriel and Pena, Eduardo Jose and Belen Borniego, Maria and Heinlein, Manfred and Laura Garcia, Maria. (2013) Ophioviruses CPsV and MiLBVV movement protein is encoded in RNA 2 and interacts with the coat protein. Virology, 441 (2). pp. 152-161.

Sierotzki, Helge and Scalliet, Gabriel. (2013) A Review of Current Knowledge of Resistance Aspects for the Next-Generation Succinate Dehydrogenase Inhibitor Fungicides. Phytopathology, Vol. 103, H. 9. pp. 880-887.

Szweykowska-Kulińska, Zofia and Jarmolowski, Artur and Vazquez, Franck. (2013) The crosstalk between plant microRNA biogenesis factors and the spliceosome. Plant signaling & behavior, Vol. 8, H. 11 , e26955.

Tian, Ye and Liu, Wei and Cai, Jie and Zhang, Lan-Yue and Wong, Kam-Bo and Feddermann, Nadja and Boller, Thomas and Xie, Zhi-Ping and Staehelin, Christian. (2013) The Nodulation Factor Hydrolase of Medicago truncatula : Characterization of an Enzyme Specifically Cleaving Rhizobial Nodulation Signals. Plant physiology, Vol. 163, H. 3. pp. 1179-1190.

Uroz, S. and Courty, P. E. and Pierrat, J. C. and Peter, M. and Buee, M. and Turpault, M. P. and Garbaye, J. and Frey-Klett, P.. (2013) Functional Profiling and Distribution of the Forest Soil Bacterial Communities Along the Soil Mycorrhizosphere Continuum. Microbial ecology, Vol. 66, H. 2. pp. 404-415.

Van der Linde, Sietse and Haller, Simone. (2013) Obtaining a spore free fungal community composition. Fungal ecology, Vol. 6, H. 6. pp. 522-526.

Vazquez, Franck and Hohn, Thomas. (2013) Biogenesis and Biological Activity of Secondary siRNAs in Plants. Scientifica, Vol. 2013 , Article ID 783253, 12 p..

Walder, Florian and Niemann, Helge and Lehmann, Moritz F. and Boller, Thomas and Wiemken, Andres and Courty, Pierre-Emmanuel. (2013) Tracking the carbon source of arbuscular mycorrhizal fungi colonizing C-3 and C-4 plants using carbon isotope ratios (delta C-13). Soil biology & biochemistry, Vol. 58. pp. 341-344.

Yakovlev, Igor A. and Hietala, Ari M. and Courty, Pierre-Emmanuel and Lundell, Taina and Solheim, Halvor and Fossdal, Carl Gunnar. (2013) Genes associated with lignin degradation in the polyphagous white-rot pathogen Heterobasidion irregulare show substrate-specific regulation. Fungal genetics and biology, Vol. 56. pp. 17-24.


Akbar, F. and Briddon, R. W. and Vazquez, F. and Saeed, M.. (2012) Transcript mapping of Cotton leaf curl Burewala virus and its cognate betasatellite, Cotton leaf curl Multan betasatellite. Virology journal, Vol. 9. p. 249.

Albrecht, C. and Boutrot, F. and Segonzac, C. and Schwessinger, B. and Gimenez-Ibanez, S. and Chinchilla, D. and Rathjen, J. P. and de Vries, S. C. and Zipfel, C.. (2012) Brassinosteroids inhibit pathogen-associated molecular pattern-triggered immune signaling independent of the receptor kinase BAK1. Proceedings of the National Academy of Sciences of the United States of America, Vol. 109, H. 1. pp. 303-308.

Amari, K. and Vazquez, F. and Heinlein, M.. (2012) Manipulation of plant host susceptibility : an emerging role for viral movement proteins? Frontiers in plant science, Vol. 3 , Art. 10. pp. 1-7.

Aregger, M. and Borah, B. K. and Seguin, J. and Rajeswaran, R. and Gubaeva, E. G. and Zvereva, A. S. and Windels, D. and Vazquez, F. and Blevins, T. and Farinelli, L. and Pooggin, M. M.. (2012) Primary and secondary siRNAs in geminivirus-induced gene silencing. PLoS Pathogens, Vol. 8, H. 9 , e1002941.

Blum, Mathias. Molecular characterization of cellulose synthase (CesA) genes and impact of mutations on fungicide resistance in oomycetes. 2012, Doctoral Thesis, University of Basel, Faculty of Science.

Boller, Thomas. (2012) Experimental evidence of a role for RLKs in innate immunity. In: Receptor-like kinases in plants : from development to defense. Heidelberg, pp. 67-78.

Boller, Thomas and Flury, Pascale. (2012) Peptides as danger signals : MAMPs and DAMPs. In: Plant signaling peptides. Heidelberg, pp. 163-181.

Bucher, E. and Reinders, J. and Mirouze, M.. (2012) Epigenetic control of transposon transcription and mobility in Arabidopsis. Current Opinion in Plant Biology, Vol. 15, H. 5. pp. 503-510.

Chinchilla, Delphine and Boller, Thomas. (2012) Innate immunity : pattern recognition in plants. In: Effectors in plant-microbe interactions. Chichester, pp. 3-32.

Couillerot, Jean-Paul and Windels, David and Vazquez, Franck and Michalski, Jean-Claude and Hilbert, Jean-Louis and Blervacq, Anne-Sophie. (2012) Pretreatments, conditioned medium and co-culture increase the incidence of somatic embryogenesis of different Cichorium species. Plant signaling & behavior, Vol. 7, H. 1. pp. 121-131.

Hann, Dagmar and Boller, Thomas. (2012) Microbial effectors and their role in plant defense suppression. In: Effectors in plant-microbe interactions. Chichester, pp. 33-52.

Kruszka, K. and Pieczynski, M. and Windels, D. and Bielewicz, D. and Jarmolowski, A. and Szweykowska-Kulinska, Z. and Vazquez, F.. (2012) Role of microRNAs and other sRNAs of plants in their changing environments. Journal of plant physiology, Vol. 169, H. 16. pp. 1664-1672.

Lopez-Gomez, M. and Sandal, N. and Stougaard, J. and Boller, T.. (2012) Interplay of flg22-induced defence responses and nodulation in Lotus japonicus. Journal of experimental botany, Vol. 63, no. 1. pp. 393-401.

Lux, J. and Pena, E. J. and Bolze, F. and Heinlein, M. and Nicoud, J. F.. (2012) Malachite green derivatives for two-photon RNA detection. ChemBioChem, Vol. 13, H. 8. pp. 1206-1213.

Mathimaran, N. and Srivastava, R. and Wiemken, A. and Sharma, A. K. and Boller, T.. (2012) Genome sequences of two plant growth-promoting fluorescent Pseudomonas strains, R62 and R81. Journal of bacteriology, Vol. 194, H. 12. pp. 3272-3273.

Mirouze, M. and Lieberman-Lazarovich, M. and Aversano, R. and Bucher, E. and Nicolet, J. and Reinders, J. and Paszkowski, J.. (2012) Loss of DNA methylation affects the recombination landscape in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, Vol. 109, H. 15. pp. 5880-5885.

Mueller, K. and Bittel, P. and Chinchilla, D. and Jehle, A. K. and Albert, M. and Boller, T. and Felix, G.. (2012) Chimeric FLS2 receptors eveal the basis for differential flagellin perception in Arabidopsis and tomato. The plant cell, Vol. 24, H. 5. pp. 2213-2224.

Mueller, K. and Chinchilla, D. and Albert, M. and Jehle, A. K. and Kalbacher, H. and Boller, T. and Felix, G.. (2012) Contamination risks in work with synthetic peptides: flg22 as an example of a pirate in commercial peptide Preparations. The plant cell, Vol. 24, H. 8. pp. 3193-3197.

Niehl, A. and Amari, K. and Gereige, D. and Brandner, K. and Mely, Y. and Heinlein, M.. (2012) Control of tobacco mosaic virus movement protein fate by CELL-DIVISION-CYCLE Protein48. Plant physiology, Vol. 160, H. 4. pp. 2093-2108.

Pena, Eduardo and Niehl, Annette and Heinlein, Manfred. (2012) Viral studies point the way : mechanisms of intercellular transport. In: Short and Long Distance Signaling. New York, pp. 1-43.

Pena, Eduardo J. and Heinlein, Manfred. (2012) RNA transport during TMV cell-to-cell movement. Frontiers in plant science, Vol. 3. p. 193.

Pena, Eduardo Jose and Robles Luna, Gabriel and Zanek, Maria Cecilia and Borniego, Maria Belen and Reyes, Carina Andrea and Heinlein, Manfred and Garcia, Maria Laura. (2012) Citrus psorosis and Mirafiori lettuce big-vein ophiovirus coat proteins localize to the cytoplasm and self interact in vivo. Virus research, Vol. 170, H. 1-2. pp. 34-43.

Pooggin, M. M. and Rajeswaran, R. and Schepetilnikov, M. V. and Ryabova, L. A.. (2012) Short ORF-dependent ribosome shunting operates in an RNA picorna-like Virus and a DNA pararetrovirus that cause rice tungro disease. PLoS Pathogens, Vol. 8, H. 3 , e1002568.

Puchta, H. and Hohn, B.. (2012) In Planta Somatic Homologous Recombination Assay Revisited : a Successful and Versatile, but Delicate Tool. The plant cell, Vol. 24, H. 11. pp. 4324-4331.

Rajeswaran, R. and Aregger, M. and Zvereva, A. S. and Borah, B. K. and Gubaeva, E. G. and Pooggin, M. M.. (2012) Sequencing of RDR6-dependent double-stranded RNAs reveals novel features of plant siRNA biogenesis. Nucleic Acids Research, 40 (13). pp. 6241-6254.

Rajeswaran, R. and Pooggin, M. M.. (2012) RDR6-mediated synthesis of complementary RNA is terminated by miRNA stably bound to template RNA. Nucleic Acids Research, 40 (2). pp. 594-599.

Rajeswaran, Rajendran and Pooggin, Mikhail. (2012) Role of virus-derived small RNAs in plant antiviral defense : insights from DNA viruses. In: MicroRNAs in Plant development and Stress Response. Berlin, Heidelberg, pp. 261-289.

Ranf, S. and Grimmer, J. and Poschl, Y. and Pecher, P. and Chinchilla, D. and Scheel, D. and Lee, J.. (2012) Defense-Related Calcium Signaling Mutants Uncovered via a Quantitative High-Throughput Screen in Arabidopsis thaliana. Molecular plant, Vol. 5, H. 1. pp. 115-130.

Singh, P. and Kuo, Y. C. and Mishra, S. and Tsai, C. H. and Chien, C. C. and Chen, C. W. and Desclos-Theveniau, M. and Chu, P. W. and Schulze, B. and Chinchilla, D. and Boller, T. and Zimmerli, L.. (2012) The Lectin Receptor Kinase-VI.2 is required for priming and positively regulates Arabidopsis pattern-triggered immunity. The plant cell, Vol. 24, H. 3. pp. 1256-1270.

Sun, W. X. and Cao, Y. R. and Labby, K. J. and Bittel, P. and Boller, T. and Bent, A. F.. (2012) Probing the Arabidopsis flagellin receptor : FLS2-FLS2 association and the contributions of specific domains to signaling function. The plant cell, Vol. 24, H. 3. pp. 1096-1113.

Walder, F. and Niemann, H. and Natarajan, M. and Lehmann, M. F. and Boller, T. and Wiemken, A.. (2012) Mycorrhizal Networks : Common Goods of Plants Shared under Unequal Terms of Trade. Plant physiology, Vol. 159, H. 2. pp. 789-797.

Xin, D. W. and Liao, S. and Xie, Z. P. and Hann, D. R. and Steinle, L. and Boller, T. and Staehelin, C.. (2012) Functional analysis of NopM, a novel E3 ubiquitin ligase (NEL) domain effector of Rhizobium sp strain NGR234. PLoS Pathogens, Vol. 8, H. 5 , e1002707.

Zvereva, Anna S. and Pooggin, Mikhail M.. (2012) Silencing and innate immunity in plant defense against viral and non-viral pathogens. Viruses, Vol. 4, H. 11. pp. 2578-2597.


Amari, K. and Lerich, A. and Schmitt-Keichinger, C. and Dolja, V. V. and Ritzenthaler, C.. (2011) Tubule-Guided Cell-to-Cell Movement of a Plant Virus Requires Class XI Myosin Motors. PLoS Pathogens, Vol. 7, H. 10 , e1002327.

Anderson, J. C. and Bartels, Sebastian and Besteiro, M. A. G. and Shahollari, B. and Ulm, R. and Peck, S. C.. (2011) Arabidopsis MAP Kinase Phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria. Plant Journal, 67 (2). pp. 258-268.

Besteiro, M. A. G. and Bartels, Sebastian and Albert, A. and Ulm, R.. (2011) Arabidopsis MAP kinase phosphatase 1 and its target MAP kinases 3 and 6 antagonistically determine UV-B stress tolerance, independent of the UVR8 photoreceptor pathway. Plant Journal, 68 (4). pp. 727-737.

Blevins, T. and Rajeswaran, R. and Aregger, M. and Borah, B. K. and Schepetilnikov, M. and Baerlocher, L. and Farinelli, L. and Meins, F. and Hohn, T. and Pooggin, M. M.. (2011) Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense. Nucleic Acids Research, 39 (12). pp. 5003-5014.

Blom, D. and Fabbri, C. and Connor, E. C. and Schiestl, F. P. and Klauser, Dominik. and Boller, Thomas and Eberl, L. and Weisskopf, L.. (2011) Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions. Environmental Microbiology, 13 (11). pp. 3047-3058.

Blum, M. and Waldner, M. and Olaya, G. and Cohen, Y. and Gisi, U. and Sierotzki, H.. (2011) Resistance mechanism to carboxylic acid amide fungicides in the cucurbit downy mildew pathogen Pseudoperonospora cubensis. Pest Management Science, 67 (10). pp. 1211-1214.

Courty, P. E. and Walder, F. and Boller, T. and Ineichen, K. and Wiemken, A. and Rousteau, A. and Selosse, M. A.. (2011) Carbon and nitrogen metabolism in mycorrhizal networks and mycoheterotrophic plants of tropical forests: A stable isotope analysis. Plant physiology, Vol. 156, H. 2. pp. 952-961.

Foetzki, A. and Winzeler, M. and Boller, Thomas and Felber, F. and Gruissem, W. and Keel, C. and Keller, B. and Mascher, F. and Maurhofer, M. and Nentwig, W. and Romeis, J. and Sautter, C. and Schmid, B. and Bigler, F.. (2011) Field trials with genetically modified powdery mildew-resistant wheat. Agrarforschung Schweiz, 2 (10). pp. 446-453.

Gisi, U. and Walder, F. and Resheat-Eini, Z. and Edel, D. and Sierotzki, H.. (2011) Changes of genotype, sensitivity and aggressiveness in Phytophthora infestans isolates collected in European countries in 1997, 2006 and 2007. Journal of Phytopathology, 159 (4). pp. 223-232.

Hohn, T. and Vazquez, F.. (2011) RNA silencing pathways of plants : silencing and its suppression by plant DNA viruses. Biochimica et biophysica acta. Gene regulatory mechanisms, Vol. 1809, H. 11-12. pp. 588-600.

Hu, Q. A. and Hollunder, J. and Niehl, A. and Korner, C. J. and Gereige, D. and Windels, D. and Arnold, A. and Kuiper, M. and Vazquez, F. and Pooggin, M. and Heinlein, M.. (2011) Specific impact of tobamovirus infection on the Arabidopsis small RNA profile. PLoS ONE, Vol. 6, H. 5 , e19549.

Ito, H. and Gaubert, H. and Bucher, E. and Mirouze, M. and Vaillant, I. and Paszkowski, J.. (2011) An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature, Vol. 472, H. 7341. pp. 115-119.

Loth-Pereda, V. and Orsini, E. and Courty, Pierre-Emmanuel. and Lota, F. and Kohler, A. and Diss, L. and Blaudez, D. and Chalot, M. and Nehls, U. and Bucher, M. and Martin, F.. (2011) Structure and expression profile of the phosphate Pht1 transporter gene family in mycorrhizal Populus trichocarpa. Plant Physiology , 156 (4). pp. 2141-2154.

Niehl, A. and Heinlein, M.. (2011) Cellular pathways for viral transport through plasmodesmata. Protoplasma, Vol. 248, H. 1. pp. 75-99.

Oehl, F. and Jansa, J. and Ineichen, K. and Mäder, P. and van der Heijden, M.. (2011) Arbuscular mycorrhizal fungi as bio-indicators in Swiss agricultural soils. Agrarforschung Schweiz, 2 (7-8). pp. 304-311.

Rineau, F. and Courty, Pierre-Emmanuel. (2011) Secreted enzymatic activities of ectomycorrhizal fungi as a case study of functional diversity and functional redundancy. Annals of Forest Science, 68 (1). pp. 69-80.

Roux, M. and Schwessinger, B. and Albrecht, C. and Chinchilla, D. and Jones, A. and Holton, N. and Malinovsky, F. G. and Tor, M. and de Vries, S. and Zipfel, C.. (2011) The Arabidopsis leucine-rich repeat receptor-like kinases BAK1/SERK3 and BKK1/SERK4 are required for innate immunity to hemibiotrophic and biotrophic pathogens. The plant cell, Vol. 23, H. 6. pp. 2440-2455.

Sablok, G. and Gupta, P. K. and Baek, J. M. and Vazquez, F. and Min, X. J.. (2011) Genome-wide survey of alternative splicing in the grass Brachypodium distachyon: a emerging model biosystem for plant functional genomics. Biotechnology Letters, 33 (3). pp. 629-636.

Sablok, G. and Nayak, K. C. and Vazquez, F. and Tatarinova, T. V.. (2011) Synonymous Codon Usage, GC(3), and Evolutionary Patterns Across Plastomes of Three Pooid Model Species: Emerging Grass Genome Models for Monocots. Molecular Biotechnology, 49 (2). pp. 116-128.

Segonzac, C. and Feike, D. and Gimenez-Ibanez, S. and Hann, D. R. and Zipfel, C. and Rathjen, J. P.. (2011) Hierarchy and roles of pathogen-associated molecular pattern-induced responses in Nicotiana benthamiana. Plant Physiology , 156 (2). pp. 687-699.

Si-Ammour, A. and Windels, D. and Arn-Bouldoires, E. and Kutter, C. and Ailhas, J. and Meins, F. and Vazquez, F.. (2011) miR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves. Plant physiology, Vol. 157, H. 2. pp. 683-691.

Windels, David and Vazquez, Franck. (2011) miR393: Integrator of environmental cues in auxin signaling? Plant signaling & behavior, Vol. 6, H. 11. pp. 1672-1675.


Amari, K. and Boutant, E. and Hofmann, C. and Schmitt-Keichinger, C. and Fernandez-Calvino, L. and Didier, P. and Lerich, A. and Mutterer, J. and Thomas, C. L. and Heinlein, M. and Mely, Y. and Maule, A. J. and Ritzenthaler, C.. (2010) A family of plasmodesmal proteins with receptor-like properties for plant viral movement proteins. PLoS Pathogens, Vol. 6, H. 9 , e1001119, 10 S..

Bartels, S. and Besteiro, M. A. G. and Lang, D. and Ulm, R.. (2010) Emerging functions for plant MAP kinase phosphatases. Trends in plant science, Vol. 15, no. 6. pp. 322-329.

Bittel, Pascal. Innate immunity mediated by the flagellin receptor FLS2 in Arabidopsis and tomato : a molecular approach to characterize ligand binding and function, using receptor chimeras. 2010, Doctoral Thesis, University of Basel, Faculty of Science.

Blackburn, K. and Mbeunkui, F. and Mitra, S. K. and Mentzel, T. and Goshe, M. B.. (2010) Improving protein and proteome coverage through data-independent multiplexed peptide fragmentation. Journal of Proteome Research, Vol. 9, H. 7. pp. 3621-3637.

Blum, M. and Waldner, M. and Gisi, U.. (2010) A single point mutation in the novel PvCesA3 gene confers resistance to the carboxylic acid amide fungicide mandipropamid in Plasmopara viticola. Fungal Genetics and Biology, Vol. 47, H. 6. pp. 499-510.

Boutant, E. and Didier, P. and Niehl, A. and Mely, Y. and Ritzenthaler, C. and Heinlein, M.. (2010) Fluorescent protein recruitment assay for demonstration and analysis of in vivo protein interactions in plant cells and its application to Tobacco mosaic virus movement protein. >>The<< Plant Journal, Vol. 62, H. 1. pp. 171-177.

Boyko, A. and Blevins, T. and Yao, Y. L. and Golubov, A. and Bilichak, A. and Ilnytskyy, Y. and Hollander, J. and Meins, F. and Kovalchuk, I.. (2010) Transgenerational Adaptation of Arabidopsis to Stress Requires DNA Methylation and the Function of Dicer-Like Proteins. PLoS ONE, Vol. 5, H. 3 , e9514.

Börstler, Boris. Diversity of cultured isolates and field populations of the arbuscular mycorrhizal fungus "Glomus intraradices" : development and application of molecular detection methods for mitochondrial haplotypes. 2010, Doctoral Thesis, University of Basel, Faculty of Science.

Chellappan, P. and Xia, J. and Zhou, X. F. and Gao, S. and Zhang, X. M. and Coutino, G. and Vazquez, F. and Zhang, W. X. and Jin, H. L.. (2010) siRNAs from miRNA sites mediate DNA methylation of target genes. Nucleic Acids Research, 38 (20). pp. 6883-6894.

Feddermann, N. and Finlay, R. and Boller, T. and Elfstrand, M.. (2010) Functional diversity in arbuscular mycorrhiza - the role of gene expression, phosphorous nutrition and symbiotic efficiency. Fungal Ecology, Vol. 3, H. 1. pp. 1-8.

Gamper, H. A. and van der Heijden, M. G. A. and Kowalchuk, G. A.. (2010) Molecular trait indicators: moving beyond phylogeny in arbuscular mycorrhizal ecology. New Phytologist, 185 (1). pp. 67-82.

Gimenez-Ibanez, S. and Hann, D. R. and Rathjen, J. P.. (2010) Deciphering the mode of action and host recognition of bacterial type III effectors. Functional Plant Biology, Vol. 37. pp. 926-932.

Hann, D. R. and Gimenez-Ibanez, S. and Rathjen, J. P.. (2010) Bacterial virulence effectors and their activities. Current Opinion in Plant Biology, Vol. 13. pp. 388-393.

Hann, D. R. and Rathjen, J. P.. (2010) The long and winding road: virulence effector proteins of plant pathogenic bacteria. Cellular and Molecular Life Sciences, Vol. 67, no. 20. pp. 3425-3434.

Häweker, H. and Rips, S. and Koiwa, H. and Salomon, S. and Saijo, Y. and Chinchilla, D. and Robatzek, S. and von Schaewen, A.. (2010) Pattern recognition receptors require N -glycosylation to mediate plant immunity. Journal of biological chemistry, Vol. 285, H. 7. pp. 4629-4636.

Jeworutzki, E. and Roelfsema, M. R. G. and Anschutz, U. and Krol, E. and Elzenga, J. T. M. and Felix, G. and Boller, T. and Hedrich, R. and Becker, D.. (2010) Early signaling through the Arabidopsis pattern recognition receptors FLS2 and EFR involves Ca; 2+; -associated opening of plasma membrane anion channels. >>The<< Plant Journal, Vol. 62, H. 3. pp. 367-378.

Krol, E. and Mentzel, T. and Chinchilla, D. and Boller, T. and Felix, G. and Kemmerling, B. and Postel, S. and Arents, M. and Jeworutzki, E. and Al-Rasheid, K. A. S. and Becker, D. and Hedrich, R.. (2010) Perception of the Arabidopsis danger signal peptide 1 involves the pattern recognition receptor AtPEPR1 and Its close homologue AtPEPR2. Journal of biological chemistry, Vol. 285, H. 18. pp. 13471-13479.

Ouko, M. O. and Sambade, A. and Brandner, K. and Niehl, A. and Pena, E. and Ahad, A. and Heinlein, M. and Nick, P.. (2010) Tobacco mutants with reduced microtubule dynamics are less susceptible to TMV. The plant journal, Vol. 62, H. 5. pp. 829-839.

Schulze B, Mentzel T. and Jehle AK, Mueller K. and Beeler S, Boller T. and Felix G, Chinchilla D.. (2010) Rapid heteromerization and phosphorylation of ligand-activated plant transmembrane receptors and their associated kinase BAK1. Journal of biological chemistry, Vol. 285 , no. 13. pp. 9444-9451.

Stracke, R. and Favory, J. J. and Gruber, H. and Bartelniewoehner, L. and Bartels, S. and Binkert, M. and Funk, M. and Weisshaar, B. and Ulm, R.. (2010) The Arabidopsis bZIP transcription factor HY5 regulates expression of the; PFG1/MYB12; gene in response to light and ultraviolet-B radiation. Plant, cell & environment, Vol. 33, H. 1. pp. 88-103.

Vazquez, F. and Legrand, S. and Windels, D.. (2010) The biosynthetic pathways and biological scopes of plant small RNAs. Trends in Plant Science, Vol. 15, no. 6. pp. 337-345.


Altenbach, D. and Rudino-Pinera, E. and Olvera, C. and Boller, T. and Wiemken, A. and Ritsema, T.. (2009) An acceptor-substrate binding site determining glycosyl transfer emerges from mutant analysis of a plant vacuolar invertase and a fructosyltransferase. Plant molecular biology, Vol. 69, H. 1-2. pp. 47-56.

Aslam, S. N. and Erbs, G. and Morrissey, K. L. and Newman, M. A. and Chinchilla, D. and Boller, T. and Molinaro, A. and Jackson, R. W. and Cooper, R. M.. (2009) Microbe-associated molecular pattern (MAMP) signatures, synergy, size and charge : influences on perception or mobility and host defence responses. Molecular plant pathology, Vol. 10, H. 3. pp. 375-387.

Bartels, Sebastian and Anderson, Jeffrey C. and González Besteiro, Marina A. and Carreri, Alessandro and Hirt, Heribert and Buchala, Antony and Métraux, Jean-Pierre and Peck, Scott C. and Ulm, Roman. (2009) MAP kinase phosphatase1 and protein tyrosine phosphatase1 are repressors of salicylic acid synthesis and SNC1-mediated responses in Arabidopsis. Plant Cell, 21 (9). pp. 2884-2897.

Boboye, B. and Nyakatura, G. and Rosenthal, A. and Perret, X. and Broughton, W. J. and Boller, T.. (2009) Sequence analysis of a DNA fragment from Sinorhizobium fredii USDA257 which extends the nitrogen fixation host range of Rhizobium species NGR234 to soybean, Glycine max (L.) Merr cultivar Peking. Symbiosis, Vol. 48, H. 1-3. pp. 110-119.

Boller, T. and Felix, G.. (2009) A renaissance of elicitors : perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annual review of plant biology, Vol. 60. pp. 379-406.

Boller, T. and He, S. Y.. (2009) Innate immunity in plants : an arms race between pattern recognition receptors in plants and effectors in microbial pathogens. Science, Vol. 324, H. 5928. pp. 742-744.

Chinchilla, D. and Shan, L. and He, P. and de Vries, S. and Kemmerling, B.. (2009) One for all : the receptor-associated kinase BAK1. Trends in plant science, Vol. 14, no. 10. pp. 535-541.

Gamper, H. A. and Walker, C. and Schüssler, A.. (2009) Diversispora celata; sp nov: molecular ecology and phylotaxonomy of an inconspicuous arbuscular mycorrhizal fungus. New phytologist, Vol. 182. pp. 495-506.

Li, J. and Zhao-Hui, C. and Batoux, M. and Nekrasov, V. and Roux, M. and Chinchilla, D. and Zipfel, C. and Jones, J. D. G.. (2009) Specific ER quality control components required for biogenesis of the plant innate immune receptor EFR. Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 37. pp. 15973-15978.

Lu, X. and Tintor, N. and Mentzel, T. and Kombrink, E. and Boller, T. and Robatzek, S. and Schulze-Lefert, P. and Saijo, Y.. (2009) Uncoupling of sustained MAMP receptor signaling from early outputs in an Arabidopsis endoplasmic reticulum glucosidase II allele. Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 52. pp. 22522-22527.

Nekrasov, V. and Li, J. and Batoux, M. and Roux, M. and Chu, Z. H. and Lacombe, S. and Rougon, A. and Bittel, P. and Kiss-Papp, M. and Chinchilla, D. and van Esse, H. P. and Jorda, L. and Schwessinger, B. and Nicaise, V. and Thomma, Bphj and Molina, A. and Jones, J. D. G. and Zipfel, C.. (2009) Control of the pattern-recognition receptor EFR by an ER protein complex in plant immunity. The EMBO journal, Vol. 28, H. 21. pp. 3428-3438.

Ritsema, T. and Brodmann, D. and Diks, S. H. and Bos, C. L. and Nagaraj, V. and Pieterse, C. M. J. and Boller, T. and Wiemken, A. and Peppelenbosch, M. P.. (2009) Are small GTPases signal hubs in sugar-mediated induction of fructan biosynthesis? PLoS ONE, Vol. 4, H. 8 , e6605.


Aslam, Shazia N. and Newman, Mari-Anne and Erbs, Gitte and Morrissey, Kate L. and Chinchilla, Delphine and Boller, Thomas and Jensen, Tina Tandrup and De Castro, Cristina and Ierano, Teresa and Molinaro, Antonio and Jackson, Robert W. and Knight, Marc R. and Cooper, Richard M.. (2008) Bacterial polysaccharides suppress induced innate immunity by calcium chelation. Current biology, Vol. 18, H. 14. pp. 1078-1083.

Göhre, V. and Spallek, T. and Haeweker, H. and Mersmann, S. and Mentzel, T. and Boller, T. and de Torres, M. and Mansfield, J. W. and Robatzek, S.. (2008) Plant pattern-recognition receptor FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB. Current biology, Vol. 18, H. 23. pp. 1824-1832.

Knauert, Stefanie. Toxicity of pesticides and their mixture to primary producers. 2008, Doctoral Thesis, University of Basel, Faculty of Science.


Chinchilla, Delphine and Zipfel, Cyril and Robatzek, Silke and Kemmerling, Birgit and Nürnberger, Thorsten and Jones, Jonathan D. G. and Felix, Georg and Boller, Thomas. (2007) A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature, Vol. 448, H. 7152. pp. 497-500.

Feddermann Bühler, Nadja. Gene induction during plant-microbe interactions : the role of chitinases during fungal infection and the investigation of mycorrhiza-induced genes in the model plant "M. truncatula". 2007, Doctoral Thesis, University of Basel, Faculty of Science.


Brodmann, David. Effects of trehalose on gene expression in "Arabidopsis thaliana" seedlings : a genome-wide analysis. 2006, Doctoral Thesis, University of Basel, Faculty of Science.

Zipfel, Cyril. Receptor-like kinases and pathogen-associated molecular patterns perception in Arabidopsis. 2006, Doctoral Thesis, University of Basel, Faculty of Science.


Kunze, Gernot Ulrich. Characterization of a novel bacterial PAMP - elongation factor Tu - and its role in "Arabidopsis thaliana" defense and immunity. 2005, Doctoral Thesis, University of Basel, Faculty of Science.


Engelhard, Margret. Trehalose and the nitrogen fixing nodule symbiosis of legumes : studies on rhizobia deficient in the trehalose-6-phosphate synthase gene "ots"A. 2004, Doctoral Thesis, University of Basel, Faculty of Science.

Thürig, Barbara. The effect of an extract from mycelium of "Penicillium chrysogenum" on plant-pathogen interactions and characterisation of elicitors in this extract. 2004, Doctoral Thesis, University of Basel, Faculty of Science.


Ashby, Jamie A.. Studies on the interaction between "Tobacco Mosaic Virus" movement protein and microtubules. 2003, Doctoral Thesis, University of Basel, Faculty of Science.

Bauer, Zsuzsa. Characterization of flagellin perception in "Arabidopsis thaliana". 2003, Doctoral Thesis, University of Basel, Faculty of Science.

Marazzi, Cristina. Plant sulphur nutrition influencing host-plant selection and performance of insect herbivores. 2003, Doctoral Thesis, University of Basel, Faculty of Science.


Corbière, Hélène Louise Françoise. The importance of sucrose synthase for AM symbiosis in maize, in pea and in Medicago. 2002, Doctoral Thesis, University of Basel, Faculty of Science.

Knechtle, Philipp. AgSPA2 and AgBOI control landmarks of filamentous growth in the filamentous ascomycete Ashbya gossypii. 2002, Doctoral Thesis, University of Basel, Faculty of Science.

This list was generated on Sun Jan 19 03:58:14 2020 CET.