Items where Author is "Bumann, Dirk"
Jump to: 14 July 2023 | 2023 | 2022 | 2021 | 4 March 2020 | 2020 | 28 May 2019 | 2019 | 2018 | 2017 | March 2016 | 2016 | 2015 | 2014 | 2013 | 2012 | 2010 | 2009 | 2002 Number of items: 61. 14 July 2023Huessy, Benjamin and Bumann, Dirk and Ebert, Dieter. (2023) Ectopical expression of bacterial collagen-like protein supports its role as adhesin in host-parasite coevolution. 2023Hauswirth, Patrick and Buck, Jonas and Puligilla, Ramya and Alter, Claudio Luca and Sieber, Sandro and Claudi, Beatrice and Fanous, Joseph and Bumann, Dirk and Huwyler, Jörg. (2023) Zebrafish Larvae as an; in vivo; Model for Antimicrobial Activity Tests against Intracellular; Salmonella;. Frontiers in bioscience (Landmark edition), 28 (5). p. 99. 2022Dogga, Sunil Kumar and Lunghi, Matteo and Maco, Bohumil and Li, Jiagui and Claudi, Beatrice and Marq, Jean-Baptiste and Chicherova, Natalia and Kockmann, Tobias and Bumann, Dirk and Hehl, Adrian B. and Soldati-Favre, Dominique and Hammoudi, Pierre-Mehdi. (2022) Importance of aspartyl protease 5 in the establishment of the intracellular niche during acute and chronic infection of Toxoplasma gondii. Molecular Microbiology, 118 (6). pp. 601-622. Hinnu, Mariliis and Putrinš, Marta and Kogermann, Karin and Bumann, Dirk and Tenson, Tanel. (2022) Making Antimicrobial Susceptibility Testing More Physiologically Relevant with Bicarbonate? Antimicrobial Agents and Chemotherapy, 66 (5). e0241221. Luscher, Alexandre and Gasser, Véronique and Bumann, Dirk and Mislin, Gaëtan L. A. and Schalk, Isabelle J. and Köhler, Thilo. (2022) Plant-Derived Catechols Are Substrates of TonB-Dependent Transporters and Sensitize Pseudomonas aeruginosa to Siderophore-Drug Conjugates. mBio, 13 (4). e0149822. 2021Bhamidimarri, Satya Prathyusha and Young, Tessa R. and Shanmugam, Muralidharan and Soderholm, Sandra and Baslé, Arnaud and Bumann, Dirk and van den Berg, Bert. (2021) Acquisition of ionic copper by the bacterial outer membrane protein OprC through a novel binding site. PLoS Biology, 19 (11). e3001446. Haschka, David and Tymoszuk, Piotr and Petzer, Verena and Hilbe, Richard and Heeke, Simon and Dichtl, Stefanie and Skvortsov, Sergej and Demetz, Egon and Berger, Sylvia and Seifert, Markus and Mitterstiller, Anna-Maria and Moser, Patrizia and Bumann, Dirk and Nairz, Manfred and Theurl, Igor and Weiss, Guenter. (2021) Ferritin H deficiency deteriorates cellular iron handling and worsens Salmonella typhimurium infection by triggering hyperinflammation. JCI insight, 6 (13). e141760. Dehinwal, Ruchika and Cooley, Danielle and Rakov, Alexey V. and Alugupalli, Akhil S. and Harmon, Joey and Cunrath, Olivier and Vallabhajosyula, Prashanth and Bumann, Dirk and Schifferli, Dieter M.. (2021) Increased Production of Outer Membrane Vesicles by Salmonella Interferes with Complement-Mediated Innate Immune Attack. mBio, 12 (3). e0086921. Huemer, Markus and Mairpady Shambat, Srikanth and Bergada-Pijuan, Judith and Söderholm, Sandra and Boumasmoud, Mathilde and Vulin, Clément and Gómez-Mejia, Alejandro and Antelo Varela, Minia and Tripathi, Vishwachi and Götschi, Sandra and Marques Maggio, Ewerton and Hasse, Barbara and Brugger, Silvio D. and Bumann, Dirk and Schuepbach, Reto A. and Zinkernagel, Annelies S.. (2021) Molecular reprogramming and phenotype switching in; Staphylococcus aureus; lead to high antibiotic persistence and affect therapy success. Proceedings of the National Academy of Sciences of the United States of America, 118 (7). e2014920118. Ude, Johanna and Tripathi, Vishwachi and Buyck, Julien M. and Söderholm, Sandra and Cunrath, Olivier and Fanous, Joseph and Claudi, Beatrice and Egli, Adrian and Schleberger, Christian and Hiller, Sebastian and Bumann, Dirk. (2021) Outer membrane permeability: Antimicrobials and diverse nutrients bypass porins in Pseudomonas aeruginosa. Proceedings of the National Academy of Sciences of the United States of America, 118 (31). e2107644118. Li, Jiagui and Claudi, Beatrice and Fanous, Joseph and Chicherova, Natalia and Cianfanelli, Francesca Romana and Campbell, Robert A. A. and Bumann, Dirk. (2021) Tissue compartmentalization enables; Salmonella; persistence during chemotherapy. Proceedings of the National Academy of Sciences of the United States of America, 118 (51). e2113951118. 4 March 2020Cianfanelli, Francesca Romana and Cunrath, Olivier and Bumann, Dirk. (2020) Efficient Dual-Negative Selection for Bacterial Genome Editing. 2020Rosas-Ballina, Mauricio and Guan, Xue Li and Schmidt, Alexander and Bumann, Dirk. (2020) Classical Activation of Macrophages Leads to Lipid Droplet Formation Without; de novo; Fatty Acid Synthesis. Frontiers in Immunology, 11. p. 131. Wolf, Tobias and Jin, Wenjie and Zoppi, Giada and Vogel, Ian A. and Akhmedov, Murodzhon and Bleck, Christopher K. E. and Beltraminelli, Tim and Rieckmann, Jan C. and Ramirez, Neftali J. and Benevento, Marco and Notarbartolo, Samuele and Bumann, Dirk and Meissner, Felix and Grimbacher, Bodo and Mann, Matthias and Lanzavecchia, Antonio and Sallusto, Federica and Kwee, Ivo and Geiger, Roger. (2020) Dynamics in protein translation sustaining T cell preparedness. Nature immunology, 21 (8). pp. 927-937. Hausmann, Annika and Böck, Desirée and Geiser, Petra and Berthold, Dorothée L. and Fattinger, Stefan A. and Furter, Markus and Bouman, Judith A. and Barthel-Scherrer, Manja and Lang, Crispin M. and Bakkeren, Erik and Kolinko, Isabel and Diard, Médéric and Bumann, Dirk and Slack, Emma and Regoes, Roland R. and Pilhofer, Martin and Sellin, Mikael E. and Hardt, Wolf-Dietrich. (2020) Intestinal epithelial NAIP/NLRC4 restricts systemic dissemination of the adapted pathogen Salmonella Typhimurium due to site-specific bacterial PAMP expression. Mucosal Immunology (13). pp. 530-544. Mas, Guillaume and Burmann, Björn M. and Sharpe, Timothy and Claudi, Beatrice and Bumann, Dirk and Hiller, Sebastian. (2020) Regulation of chaperone function by coupled folding and oligomerization. Science advances, 6 (43). eabc5822. Roche, Béatrice and Bumann, Dirk. (2020) Single-cell reporters for pathogen responses to antimicrobial host attacks. Current opinion in microbiology, 59. pp. 16-23. Cunrath, Olivier and Graulier, Gwenaëlle and Carballido-Lopez, Ana and Pérard, Julien and Forster, Anne and Geoffroy, Valérie A. and Saint Auguste, Pamela and Bumann, Dirk and Mislin, Gaetan L. A. and Michaud-Soret, Isabelle and Schalk, Isabelle J. and Fechter, Pierre. (2020) The pathogen; Pseudomonas aeruginosa; optimizes the production of the siderophore pyochelin upon environmental challenges. Metallomics, 12 (12). pp. 2108-2120. 28 May 2019Eren, Elif and Planes, Rémi and Buyck, Julien and Bordignon, Pierre-Jean and Colom, André and Cunrath, Olivier and Dreier, Roland F. and Santos, José C. and Duplan-Eche, Valérie and Näser, Emmanuelle and Peixoto, Antonio and Bumann, Dirk and Cougoule, Céline and Coste, Agnès and Neyrolles, Olivier and Broz, Petr and Meunier, Etienne. (2019) Type-3 Secretion System-induced pyroptosis protects Pseudomonas against cell-autonomous immunity. 2019Bhamidimarri, Satya Prathyusha and Zahn, Michael and Prajapati, Jigneshkumar Dahyabhai and Schleberger, Christian and Söderholm, Sandra and Hoover, Jennifer and West, Josh and Kleinekathöfer, Ulrich and Bumann, Dirk and Winterhalter, Mathias and van den Berg, Bert. (2019) A Multidisciplinary Approach toward Identification of Antibiotic Scaffolds for Acinetobacter baumannii. Structure (London, England : 1993), 27 (2). pp. 268-280.e6. Bumann, Dirk and Fanous, Joseph and Li, Jiagui and Goormaghtigh, Frédéric. (2019) Antibiotic chemotherapy against heterogeneous pathogen populations in complex host tissues. F1000Research, 8. p. 1781. Balaban, Nathalie Q. and Helaine, Sophie and Lewis, Kim and Ackermann, Martin and Aldridge, Bree and Andersson, Dan I. and Brynildsen, Mark P. and Bumann, Dirk and Camilli, Andrew and Collins, James J. and Dehio, Christoph and Fortune, Sarah M. and Ghigo, Jean-Marc and Hardt, Wolf-Dietrich and Harms, Alexander and Heinemann, Matthias and Hung, Deborah T. and Jenal, Urs and Levin, Bruce R. and Michiels, Jan and Storz, Gisela and Tan, Man-Wah and Tenson, Tanel and Van Melderen, Laurence and Zinkernagel, Annelies. (2019) Definitions and guidelines for research on antibiotic persistence. Nature Reviews Microbiology, 17 (7). pp. 441-448. Jayachandran, Rajesh and Gumienny, Aleksandra and Bolinger, Beatrice and Ruehl, Sebastian and Lang, Mathias Jakob and Fucile, Geoffrey and Mazumder, Saumyabrata and Tchang, Vincent Sam Yong and Woischnig, Anne-Kathrin and Stiess, Michael and Kunz, Gabriele and Claudi, Beatrice and Schmaler, Mathias and Siegmund, Kerstin and Li, Jianping and Dertschnig, Simone and Hollaender, George and Medina, Eva and Karrer, Urs and Moshous, Despina and Bumann, Dirk and Khanna, Nina and Rossi, Simona W. and Pieters, Jean. (2019) Disruption of Coronin 1 Signaling in T Cells Promotes Allograft Tolerance while Maintaining Anti-Pathogen Immunity. Immunity, 50 (1). pp. 152-165. Trebosc, Vincent and Gartenmann, Sarah and Tötzl, Marcus and Lucchini, Valentina and Schellhorn, Birgit and Pieren, Michel and Lociuro, Sergio and Gitzinger, Marc and Tigges, Marcel and Bumann, Dirk and Kemmer, Christian. (2019) Dissecting Colistin Resistance Mechanisms in Extensively Drug-Resistant Acinetobacter baumannii Clinical Isolates. mBio, 10 (4). e01083-19. Cunrath, Oliver and Bumann, Dirk. (2019) Host resistance factor SLC11A1 restricts Salmonella growth through magnesium deprivation. Science, 366 (6468). pp. 995-999. Carballido Lopez, Ana and Cunrath, Olivier and Forster, Anne and Pérard, Julien and Graulier, Gwenaëlle and Legendre, Rachel and Varet, Hugo and Sismeiro, Odile and Perraud, Quentin and Pesset, Bénédicte and Saint Auguste, Pamela and Bumann, Dirk and Mislin, Gaëtan L. A. and Coppee, Jean Yves and Michaud-Soret, Isabelle and Fechter, Pierre and Schalk, Isabelle J.. (2019) Non-specific interference of cobalt with siderophore-dependent iron uptake pathways. Metallomics : integrated biometal science, 11 (11). pp. 1937-1951. Cunrath, Olivier and Meinel, Dominik M. and Maturana, Pauline and Fanous, Joseph and Buyck, Julien M. and Saint Auguste, Pamela and Seth-Smith, Helena M. B. and Körner, Jonas and Dehio, Christoph and Trebosc, Vincent and Kemmer, Christian and Neher, Richard and Egli, Adrian and Bumann, Dirk. (2019) Quantitative contribution of efflux to multi-drug resistance of clinical Escherichia coli and Pseudomonas aeruginosa strains. EBioMedicine, 41. pp. 479-487. Bumann, Dirk. (2019) Salmonella; Single-Cell Metabolism and Stress Responses in Complex Host Tissues. Microbiology spectrum, 7 (2). BAI-0009-2019. 2018Napolitani, Giorgio and Kurupati, Prathiba and Teng, Karen Wei Weng and Gibani, Malick M. and Rei, Margarida and Aulicino, Anna and Preciado-Llanes, Lorena and Wong, Michael Thomas and Becht, Etienne and Howson, Lauren and de Haas, Paola and Salio, Mariolina and Blohmke, Christoph J. and Olsen, Lars Rønn and Pinto, David Miguel Susano and Scifo, Laura and Jones, Claire and Dobinson, Hazel and Campbell, Danielle and Juel, Helene B. and Thomaides-Brears, Helena and Pickard, Derek and Bumann, Dirk and Baker, Stephen and Dougan, Gordon and Simmons, Alison and Gordon, Melita A. and Newell, Evan William and Pollard, Andrew J. and Cerundolo, Vincenzo. (2018) Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses. Nature immunology, 19 (7). pp. 742-754. Samanta, Susruta and Bodrenko, Igor and Acosta-Gutiérrez, Silvia and D'Agostino, Tommaso and Pathania, Monisha and Ghai, Ishan and Schleberger, Christian and Bumann, Dirk and Wagner, Richard and Winterhalter, Mathias and van den Berg, Bert and Ceccarelli, Matteo. (2018) Getting Drugs through Small Pores: Exploiting the Porins Pathway in Pseudomonas aeruginosa. ACS infectious diseases, 4 (10). pp. 1519-1528. Lim, Daejin and Kim, Kwang Soo and Jeong, Jae-Ho and Marques, Oriana and Kim, Hyun-Ju and Song, Miryoung and Lee, Tae-Hoon and Kim, Jae Il and Choi, Hueng-Sik and Min, Jung-Joon and Bumann, Dirk and Muckenthaler, Martina U. and Choy, Hyon E.. (2018) The hepcidin-ferroportin axis controls the iron content of Salmonella-containing vacuoles in macrophages. Nature communications, 9 (1). p. 2091. Luscher, Alexandre and Moynié, Lucile and Auguste, Pamela Saint and Bumann, Dirk and Mazza, Lena and Pletzer, Daniel and Naismith, James H. and Köhler, Thilo. (2018) TonB-Dependent Receptor Repertoire of Pseudomonas aeruginosa for Uptake of Siderophore-Drug Conjugates. Antimicrobial agents and chemotherapy, 62 (6). e00097-18. 2017Dehio, Christoph and Bumann, Dirk. (2017) Editorial overview: Bacterial systems biology. Current Opinion in Microbiology, 39. viii-xi. Bumann, Dirk and Cunrath, Olivier. (2017) Heterogeneity of Salmonella-host interactions in infected host tissues. Current Opinion in Microbiology, 39. pp. 57-63. Bumann, Dirk and Schothorst, Joep. (2017) Intracellular Salmonella metabolism. Cellular Microbiology, 19 (10). e12766. Schürmann, Nura and Forrer, Pascal and Casse, Olivier and Li, Jiagui and Felmy, Boas and Burgener, Anne-Valérie and Ehrenfeuchter, Nikolaus and Hardt, Wolf-Dietrich and Recher, Mike and Hess, Christoph and Tschan-Plessl, Astrid and Khanna, Nina and Bumann, Dirk. (2017) Myeloperoxidase targets oxidative host attacks to Salmonella and prevents collateral tissue damage. Nature Microbiology, 2. p. 16268. Wu, Aimin and Tymoszuk, Piotr and Haschka, David and Heeke, Simon and Dichtl, Stefanie and Petzer, Verena and Seifert, Markus and Hilbe, Richard and Sopper, Sieghart and Talasz, Heribert and Bumann, Dirk and Lass-Flörl, Cornelia and Theurl, Igor and Zhang, Keying and Weiss, Guenter. (2017) Salmonella Utilizes Zinc To Subvert Antimicrobial Host Defense of Macrophages via Modulation of NF-κB Signaling. Infection and Immunity, 85 (12). e00418-17. Abellón-Ruiz, Javier and Kaptan, Shreyas S. and Baslé, Arnaud and Claudi, Beatrice and Bumann, Dirk and Kleinekathöfer, Ulrich and van den Berg, Bert. (2017) Structural basis for maintenance of bacterial outer membrane lipid asymmetry. Nature Microbiology, 2 (12). pp. 1616-1623. March 2016Gasser, Véronique and Baco, Etienne and Cunrath, Olivier and Saint August, Pamela and Perraud, Quentin and Zill, Nicolas and Schleberger, Christian and Schmidt, Alexander and Paulen, Aurélie and Bumann, Dirk and Mislin, Gaëtan L. A. and Schalk, Isabelle J.. (2016) Catechol siderophores repress the pyochelin pathway and activate the enterobactin pathway in Pseudomonas aeruginosa: an opportunity for siderophore-antibiotic conjugates development. Environmental Microbiology, 18 (3). pp. 819-832. 2016Trebosc, Vincent and Gartenmann, Sarah and Royet, Kevin and Manfredi, Pablo and Tötzl, Marcus and Schellhorn, Birgit and Pieren, Michel and Tigges, Marcel and Lociuro, Sergio and Sennhenn, Peter C. and Gitzinger, Marc and Bumann, Dirk and Kemmer, Christian. (2016) A novel genome editing platform for drug resistant Acinetobacter baumannii revealed an AdeR-unrelated tigecycline resistance mechanism. Antimicrobial Agents and Chemotherapy, 60 (12). pp. 7263-7271. Freed, Nikki E. and Bumann, Dirk and Silander, Olin K.. (2016) Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality. BMC Microbiology, 16 (1). p. 203. 2015Martano, Giuseppe and Delmotte, Nathanaël and Kiefer, Patrick and Christen, Philipp and Kentner, David and Bumann, Dirk and Vorholt, Julia A.. (2015) Fast sampling method for mammalian cell metabolic analyses using liquid chromatography-mass spectrometry. Nature Protocols, 10 (1). pp. 1-11. Bumann, Dirk. (2015) Heterogeneous Host-Pathogen Encounters: Act Locally, Think Globally. Cell Host & Microbe, 17 (1). pp. 13-19. Abu Kwaik, Yousef and Bumann, Dirk. (2015) Host delivery of favorite meals for intracellular pathogens. PLoS Pathogens, Vol. 11, H. 6 , e1004866. McEwan, David G. and Richter, Benjamin and Claudi, Beatrice and Wigge, Christoph and Wild, Philipp and Farhan, Hesso and McGourty, Kieran and Coxon, Fraser P. and Franz-Wachtel, Mirita and Perdu, Bram and Akutsu, Masato and Habermann, Anja and Kirchof, Anja and Helfrich, Miep H. and Odgren, Paul R. and Van Hul, Wim and Frangakis, Achilleas S. and Rajalingam, Krishnaraj and Macek, Boris and Holden, David W. and Bumann, Dirk and Dikic, Ivan. (2015) PLEKHM1 Regulates Salmonella-Containing Vacuole Biogenesis and Infection. Cell Host & Microbe, 17 (1). pp. 58-71. 2014Meunier, Etienne and Dick, Mathias S. and Dreier, Roland F. and Schürmann, Nura and Kenzelmann Broz, Daniela and Warming, Søren and Roose-Girma, Merone and Bumann, Dirk and Kayagaki, Nobuhiko and Takeda, Kiyoshi and Yamamoto, Masahiro and Broz, Petr. (2014) Caspase-11 activation requires lysis of pathogen-containing vacuoles by IFN-induced GTPases. Nature, 509 (7500). pp. 366-370. Burton, Neil A. and Schürmann, Nura and Casse, Olivier and Steeb, Anne K. and Claudi, Beatrice and Zankl, Janine and Schmidt, Alexander and Bumann, Dirk. (2014) Disparate Impact of Oxidative Host Defenses Determines the Fate of Salmonella during Systemic Infection in Mice. Cell Host & Microbe, 15 (1). pp. 72-83. Bumann, Dirk. (2014) Identification of protective antigens for vaccination against systemic salmonellosis. Frontiers in Immunology, 5 (381). pp. 1-5. Claudi, Beatrice and Spröte, Petra and Chirkova, Anna and Personnic, Nicolas and Zankl, Janine and Schürmann, Nura and Schmidt, Alexander and Bumann, Dirk. (2014) Phenotypic variation of salmonella in host tissues delays eradication by antimicrobial chemotherapy. Cell, 158 (4). pp. 722-733. Kentner, David and Martano, Giuseppe and Callon, Morgane and Chiquet, Petra and Brodmann, Maj and Burton, Olga and Wahlander, Asa and Nanni, Paolo and Delmotte, Nathanaël and Grossmann, Jonas and Limenitakis, Julien and Schlapbach, Ralph and Kiefer, Patrick and Vorholt, Julia A. and Hiller, Sebastian and Bumann, Dirk. (2014) Shigella reroutes host cell central metabolism to obtain high-flux nutrient supply for vigorous intracellular growth. Proceedings of the National Academy of Sciences of the United States of America, 111 (27). pp. 9929-9934. 2013Kwaik, Yousef Abu and Bumann, Dirk. (2013) Microbial quest for food in vivo : "Nutritional virulence" as an emerging paradigm. Cellular Microbiology, 15 (6). pp. 882-890. Steeb, Benjamin and Claudi, Beatrice and Burton, Neil A. and Tienz, Petra and Schmidt, Alexander and Farhan, Hesso and Mazé, Alain and Bumann, Dirk. (2013) Parallel exploitation of diverse host nutrients enhances salmonella virulence. PLoS Pathogens, Vol. 9, H. 4 , e1003301. 2012Barat, Somedutta and Steeb, Benjamin and Mazé, Alain and Bumann, Dirk. (2012) Extensive in vivo resilience of persistent Salmonella. PLoS ONE, Vol. 7, H. 7 , e42007. Mary, Camille and Duek, Paula and Salleron, Lisa and Tienz, Petra and Bumann, Dirk and Bairoch, Amos and Lane, Lydie. (2012) Functional Identification of APIP as Human mtnB, a Key Enzyme in the Methionine Salvage Pathway. PLoS ONE, 7 (12). e52877. Leschner, Sara and Deyneko, Igor V. and Lienenklaus, Stefan and Wolf, Kathrin and Bloecker, Helmut and Bumann, Dirk and Loessner, Holger and Weiss, Siegfried. (2012) Identification of tumor-specific Salmonella Typhimurium promoters and their regulatory logic. Nucleic Acids Research, 40 (7). pp. 2984-2994. Barat, Somedutta and Willer, Yvonne and Rizos, Konstantin and Claudi, Beatrice and Mazé, Alain and Schemmer, Anne K. and Kirchhoff, Dennis and Schmidt, Alexander and Burton, Neil and Bumann, Dirk. (2012) Immunity to intracellular Salmonella depends on surface-associated antigens. PLoS Pathogens, Vol. 8, H. 10 , e1002966. Willer, Yvonne and Müller, Beatrice and Bumann, Dirk. (2012) Intestinal inflammation responds to microbial tissue load independent of pathogen/non-pathogen discrimination. PLoS ONE, Vol. 7, H. 5 , e35992. Schrimpf, Sabine P. and von Mering, Christian and Bendixen, Emøke and Heazlewood, Joshua L. and Bumann, Dirk and Omenn, Gil and Hengartner, Michael O.. (2012) The initiative on Model Organism Proteomes (iMOP) Session September 6, 2011, Geneva, Switzerland. Proteomics, 12 (3). pp. 346-350. 2010Bumann, Dirk. (2010) Pathogen proteomes during infection : a basis for infection research and novel control strategies. Journal of Proteomics, 73 (11). pp. 2267-2276. 2009Bumann, Dirk. (2009) System-level analysis of Salmonella metabolism during infection. Current Opinion in Microbiology, 12 (5). pp. 559-567. 2002Jungblut, Peter R. and Bumann, Dirk. (2002) Immunoproteome of Helicobacter pylori. Methods in Enzymology, 358. pp. 307-316. |
