Items where contributor is "Schmidt, Alexander"

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Gasser, Véronique and Baco, Etienne and Cunrath, Olivier and Saint August, Pamela and Perraud, Quentin and Zill, Nicolas and Schleberger, Christian and Schmidt, Alexander and Paulen, Aurélie and Bumann, Dirk and Mislin, Gaëtan L. A. and Schalk, Isabelle J.. (2016) Catechol siderophores repress the pyochelin pathway and activate the enterobactin pathway in Pseudomonas aeruginosa: an opportunity for siderophore-antibiotic conjugates development. Environmental microbiology, 18 (3). pp. 819-832.

Schmidt, Alexander and Kochanowski, Karl and Vedelaar, Silke and Ahrné, Erik and Volkmer, Benjamin and Callipo, Luciano and Knoops, Kèvin and Bauer, Manuel and Aebersold, Ruedi and Heinemann, Matthias. (2016) The quantitative and condition-dependent Escherichia coli proteome. Nature biotechnology, 34 (1). pp. 104-110.

Oettinghaus, Bjorn and Schulz, J. M. and Restelli, L. M. and Licci, M. and Savoia, C. and Schmidt, Alexander and Schmitt, K. and Grimm, A. and Morè, L. and Hench, J. and Tolnay, M. and Eckert, A. and D'Adamo, P. and Franken, P. and Ishihara, N. and Mihara, K. and Bischofberger, J. and Scorrano, L. and Frank, Stephan. (2016) Synaptic dysfunction, memory deficits and hippocampal atrophy due to ablation of mitochondrial fission in adult forebrain neurons. Cell death and differentiation, 23 (1). pp. 18-28.


Janssens, Georges E. and Meinema, Anne C. and González, Javier and Wolters, Justina C. and Schmidt, Alexander and Guryev, Victor and Bischoff, Rainer and Wit, Ernst C. and Veenhoff, Liesbeth M. and Heinemann, Matthias. (2015) Protein biogenesis machinery is a driver of replicative aging in yeast. eLife, 4. e08527 .

Ittig, Simon Josef and Schmutz, Christoph and Kasper, Christoph Alexander and Amstutz, Marlise and Schmidt, Alexander and Sauteur, Loïc and Vigano, M. Alessandra and Low, Shyan Huey and Affolter, Markus and Cornelis, Guy R. and Nigg, Erich A. and Arrieumerlou, Cécile. (2015) A bacterial type III secretion-based protein delivery tool for broad applications in cell biology. The Journal of cell biology, 211 (4). pp. 913-931.

Glatter, Timo and Ahrné, Erik and Schmidt, Alexander. (2015) Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells. Journal of Proteome Research, 14 (11). pp. 4472-4485.

Ahrné, Erik and Martinez-Segura, Amalia and Syed, Afzal Pasha and Vina-Vilaseca, Arnau and Gruber, Andreas J. and Marguerat, Samuel and Schmidt, Alexander. (2015) Exploiting the multiplexing capabilities of tandem mass tags for high-throughput estimation of cellular protein abundances by mass spectrometry. Methods, 85. pp. 100-107.

Sjöström, Martin and Ossola, Reto and Breslin, Thomas and Rinner, Oliver and Malmström, Lars and Schmidt, Alexander and Aebersold, Ruedi and Malmström, Johan and Niméus, Emma. (2015) A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery. Journal of Proteome Research, 14 (7). pp. 2807-2818.

Laventie, Benoît-Joseph and Nesper, Jutta and Ahrné, Erik and Glatter, Timo and Schmidt, Alexander and Jenal, Urs. (2015) Capture compound mass spectrometry - a powerful tool to identify novel c-di-GMP effector proteins. Journal of visualized experiments, H. 97 , e51404.

Bauer, Manuel and Ahrné, Erik and Baron, Anna P. and Glatter, Timo and Fava, Luca L. and Santamaria, Anna and Nigg, Erich A. and Schmidt, Alexander. (2015) Assessment of current mass spectrometric workflows for the quantification of low abundant proteins and phosphorylation sites. Data in brief, 5. pp. 297-304.


Burton, Neil A. and Schürmann, Nura and Casse, Olivier and Steeb, Anne K. and Claudi, Beatrice and Zankl, Janine and Schmidt, Alexander and Bumann, Dirk. (2014) Disparate Impact of Oxidative Host Defenses Determines the Fate of Salmonella during Systemic Infection in Mice. Cell host & microbe, Vol. 15, H. 1. S. 72-83.

Claudi, Beatrice and Spröte, Petra and Chirkova, Anna and Personnic, Nicolas and Zankl, Janine and Schürmann, Nura and Schmidt, Alexander and Bumann, Dirk. (2014) Phenotypic variation of salmonella in host tissues delays eradication by antimicrobial chemotherapy. Cell, Vol. 158, H. 4. S. 722-733.

Pieles, Kathrin and Glatter, Timo and Harms, Alexander and Schmidt, Alexander and Dehio, Christoph. (2014) An experimental strategy for the identification of AMPylation targets from complex protein samples. Proteomics, Vol. 14, H. 9. S. 1048-1052.

Bauer, Manuel and Ahrné, Erik and Baron, Anna P. and Glatter, Timo and Fava, Luca L. and Santamaria, Anna and Nigg, Erich A. and Schmidt, Alexander. (2014) Evaluation of data-dependent and -independent mass spectrometric workflows for sensitive quantification of proteins and phosphorylation sites. Journal of proteome research, Vol. 13, H. 12. S. 5973-5988.

Clément-Ziza, Mathieu and Marsellach, Francesc X. and Codlin, Sandra and Papadakis, Manos A. and Reinhardt, Susanne and Rodríguez-López, María and Martin, Stuart and Marguerat, Samuel and Schmidt, Alexander and Lee, Eunhye and Workman, Christopher T. and Bähler, Jürg and Beyer, Andreas. (2014) Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast. Molecular systems biology, Vol. 10, H. 11. S. 764.

Fengos, Georgios and Schmidt, Alexander and Martin, Katrin and Fluri, Erika and Aebersold, Ruedi and Iber, Dagmar and Pertz, Olivier. (2014) Spatial proteomic and phospho-proteomic organization in three prototypical cell migration modes. Proteome science, Vol. 12. S. 23.

Gruber, Andreas R. and Martin, Georges and Müller, Philipp and Schmidt, Alexander and Gruber, Andreas J. and Gumienny, Rafal and Mittal, Nitish and Jayachandran, Rajesh and Pieters, Jean and Keller, Walter. (2014) Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells. Nature communications, 5 (5465).


von Meyenn, Ferdinand and Porstmann, Thomas and Gasser, Emanuel and Selevsek, Nathalie and Schmidt, Alexander and Aebersold, Ruedi and Stoffel, Markus. (2013) Glucagon-Induced Acetylation of Foxa2 Regulates Hepatic Lipid Metabolism. Cell metabolism, Vol. 17, H. 3. S. 436-447.

Picotti, Paola and Clément-Ziza, Mathieu and Lam, Henry and Campbell, David S. and Schmidt, Alexander and Deutsch, Eric W. and Röst, Hannes and Sun, Zhi and Rinner, Oliver and Reiter, Lukas and Shen, Qin and Michaelson, Jacob J. and Frei, Andreas and Alberti, Simon and Kusebauch, Ulrike and Wollscheid, Bernd and Moritz, Robert L. and Beyer, Andreas and Aebersold, Ruedi. (2013) A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis. Nature, Vol. 494, H. 7436. S. 266-270.

Wong, Catherine C. L. and Cociorva, Daniel and Miller, Christine A. and Schmidt, Alexander and Monell, Craig and Aebersold, Ruedi and Yates, John R.. (2013) Proteomics of Pyrococcus furiosus (Pfu) : Identification of Extracted Proteins by Three Independent Methods. Journal of Proteome Research, Vol. 12, H. 2. S. 763-770.

Kochanowski, Karl and Volkmer, Benjamin and Gerosa, Luca and Haverkorn van Rijsewijk, Bart R. and Schmidt, Alexander and Heinemann, Matthias. (2013) Functioning of a metabolic flux sensor in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America, Vol. 110, H. 3. S. 1130-1135.

Steeb, Benjamin and Claudi, Beatrice and Burton, Neil A. and Tienz, Petra and Schmidt, Alexander and Farhan, Hesso and Mazé, Alain and Bumann, Dirk. (2013) Parallel exploitation of diverse host nutrients enhances salmonella virulence. PLoS pathogens, Vol. 9, H. 4 , e1003301.

Stützer, Ina and Selevsek, Nathalie and Esterhazy, Daria and Schmidt, Alexander and Aebersold, Ruedi and Stoffel, Markus. (2013) Systematic proteomic analysis identifies beta-site amyloid precursor protein cleaving enzyme 2 and 1 (BACE2 and BACE1) substrates in pancreatic beta-cells. Journal of biological chemistry, Vol. 288, H. 15. S. 10536-10547.

Schmutz, Christoph and Ahrne, Erik Lennart and Kasper, Christoph Alexander and Tschon, Therese and Sorg, Isabel and Dreier, Roland Felix and Schmidt, Alexander and Arrieumerlou, Cecile. (2013) Systems-level overview of host protein phosphorylation during Shigella flexneri infection revealed by phosphoproteomics. Molecular & cellular proteomics, Vol. 12, H. 10. S. 2952-2968.

Lehtinen, Sonja and Marsellach, Francesc Xavier and Codlin, Sandra and Schmidt, Alexander and Clément-Ziza, Mathieu and Beyer, Andreas and Bähler, Jürg and Orengo, Christine and Pancaldi, Vera. (2013) Stress induces remodelling of yeast interaction and co-expression networks. Molecular biosystems, Vol. 9, H. 7. S. 1697-1707.

Gunaratne, Jayantha and Schmidt, Alexander and Quandt, Andreas and Neo, Suat Peng and Saraç, Omer Sinan and Gracia, Tannia and Loguercio, Salvatore and Ahrné, Erik and Xia, Rachel Li Hai and Tan, Keng Hwa and Lössner, Christopher and Bähler, Jürg and Beyer, Andreas and Blackstock, Walter and Aebersold, Ruedi. (2013) Extensive mass spectrometry-based analysis of the fission yeast proteome : the Schizosaccharomyces pombe Peptide Atlas. Molecular & cellular proteomics, Vol. 12, H. 6. S. 1741-1751.

Ahrné, Erik and Molzahn, Lars and Glatter, Timo and Schmidt, Alexander. (2013) Critical assessment of proteome-wide label-free absolute abundance estimation strategies. Proteomics, Vol. 13, H. 17. S. 2567-2578.

Québatte, Maxime and Dick, Mathias S. and Kaever, Volkhard and Schmidt, Alexander and Dehio, Christoph. (2013) Dual input control : activation of the Bartonella henselae VirB/D4 type IV secretion system by the stringent sigma factor RpoH1 and the BatR/BatS two-component system. Molecular microbiology, Vol. 90, H. 4. S. 756-775.


Nesper, J. and Reinders, A. and Glatter, T. and Schmidt, A. and Jenal, U.. (2012) A novel capture compound for the identification and analysis of cyclic di-GMP binding proteins. Journal of proteomics, Vol. 75, Iss. 15. S. 4874-4878.

Engel, Philipp and Goepfert, Arnaud and Stanger, Frédéric V. and Harms, Alexander and Schmidt, Alexander and Schirmer, Tilman and Dehio, Christoph. (2012) Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins. Nature, 482 (7383). pp. 107-110.

Barat, Somedutta and Willer, Yvonne and Rizos, Konstantin and Claudi, Beatrice and Mazé, Alain and Schemmer, Anne K. and Kirchhoff, Dennis and Schmidt, Alexander and Burton, Neil and Bumann, Dirk. (2012) Immunity to intracellular Salmonella depends on surface-associated antigens. PLoS pathogens, Vol. 8, H. 10 , e1002966.

Glatter, Timo and Ludwig, Christina and Ahrné, Erik and Aebersold, Ruedi and Heck, Albert J. R. and Schmidt, Alexander. (2012) Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion. Journal of proteome research, Vol. 11, H. 11. S. 5145-5156.

Marguerat, Samuel and Schmidt, Alexander and Codlin, Sandra and Chen, Wei and Aebersold, Ruedi and Bähler, Jürg. (2012) Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells. Cell, Vol. 151, H. 3. S. 671-683.


Santamaria, A. and Wang, B. and Elowe, S. and Malik, R. and Zhang, F. and Bauer, M. and Schmidt, A. and Sillje, H. H. and Koerner, R. and Nigg, E. A.. (2011) The Plk1-dependent phosphoproteome of the early mitotic spindle. Molecular & cellular proteomics, Vol. 10, H. 1 , M110.004457.

Alexander Schmidt, and Martin Beck, and Johan Malmström, and Henry Lam, and Manfred Claassen, and David Campbell, and Ruedi Aebersold, . (2011) Absolute quantification of microbial proteomes at different states by directed mass spectrometry. Molecular Systems Biology, Vol. 7 , 510.

Glatter, Timo and Schittenhelm, Ralf B. and Rinner, Oliver and Roguska, Katarzyna and Wepf, Alexander and Jünger, Martin A. and Köhler, Katja and Jevtov, Irena and Choi, Hyungwon and Schmidt, Alexander and Nesvizhskii, Alexey I. and Stocker, Hugo and Hafen, Ernst and Aebersold, Ruedi and Gstaiger, Matthias. (2011) Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome. Molecular Systems Biology, Vol. 7 , 547.

Beck, Martin and Schmidt, Alexander and Malmstroem, Johan and Claassen, Manfred and Ori, Alessandro and Szymborska, Anna and Herzog, Franz and Rinner, Oliver and Ellenberg, Jan and Aebersold, Ruedi. (2011) The quantitative proteome of a human cell line. Molecular Systems Biology, Vol. 7 , 549.


Rinner, Oliver and Seebacher, Jan and Walzthoeni, Thomas and Mueller, Lukas N. and Beck, Martin and Schmidt, Alexander and Mueller, Markus and Aebersold, Ruedi. (2008) Identification of cross-linked peptides from large sequence databases. Nature methods, 5 (4). pp. 315-318.