Browse by Basel Contributors ID

2023

Diez, Lisa and Kapinos, Larisa E. and Lim, Roderick Y. H. and Wegmann, Susanne. (2023) Analysis of Tau/Nucleoporin Interactions by Surface Plasmon Resonance Spectroscopy. In: Protein Aggregation. New York, pp. 95-109.

Kapinos, Larisa E. and Lim, Roderick Y. H.. (2023) Multivalent Interactions with Intrinsically Disordered Proteins Probed by Surface Plasmon Resonance. In: The Nuclear Pore Complex, 2502. New York, pp. 311-328.

2022

Kalita, Joanna and Kapinos, Larisa E. and Zheng, Tiantian and Rencurel, Chantal and Zilman, Anton and Lim, Roderick Y. H.. (2022) Karyopherin enrichment and compensation fortifies the nuclear pore complex against nucleocytoplasmic leakage. Journal of Cell Biology, 221 (3). e202108107.

Tarvirdipour, Shabnam and Skowicki, Michal and Schoenenberger, Cora-Ann and Kapinos, Larisa E. and Lim, Roderick Y. H. and Benenson, Yaakov and Palivan, Cornelia G.. (2022) A self-assembling peptidic platform to boost the cellular uptake and nuclear delivery of oligonucleotides. Biomaterials science, 10 (15). pp. 4309-4323.

Diez, Lisa and Kapinos, Larisa E. and Hochmair, Janine and Huebschmann, Sabrina and Dominguez-Baquero, Alvaro and Vogt, Amelie and Rankovic, Marija and Zweckstetter, Markus and Lim, Roderick Y. H. and Wegmann, Susanne. (2022) Phosphorylation but Not Oligomerization Drives the Accumulation of Tau with Nucleoporin Nup98. International journal of molecular sciences, 23 (7). p. 3495.

2021

Sharma, Deepika and Lim, Roderick Y. H. and Pfohl, Thomas and Ekinci, Yasin. (2021) Optimization of Nanofluidic Devices for Geometry-Induced Electrostatic Trapping. Particle & Particle Systems Characterization, 38 (2). p. 2170003.

Hoogenboom, Bart W. and Hough, Loren E. and Lemke, Edward A. and Lim, Roderick Y. H. and Onck, Patrick R. and Zilman, Anton. (2021) Physics of the nuclear pore complex: Theory, modeling and experiment. Physics reports, 921. pp. 1-53.

Kalita, Joanna and Kapinos, Larisa E. and Lim, Roderick Y. H.. (2021) On the asymmetric partitioning of nucleocytoplasmic transport - recent insights and open questions. Journal of cell science, 134 (7). jcs240382.

Sharma, Deepika and Lim, Roderick Y. H. and Pfohl, Thomas and Ekinci, Yasin. (2021) Surface-modified elastomeric nanofluidic devices for single nanoparticle trapping. Microsystems & Nanoengineering, 7. p. 46.

2020

Barbato, Suncica and Kapinos, Larisa E. and Rencurel, Chantal and Lim, Roderick Y. H.. (2020) Karyopherin enrichment at the nuclear pore complex attenuates Ran permeability. Journal of Cell Science. aheadofrint.

Zelmer, Christina and Zweifel, Ludovit P. and Kapinos, Larisa E. and Craciun, Ioana and Güven, Zekiye P. and Palivan, Cornelia G. and Lim, Roderick Y. H.. (2020) Organelle-specific targeting of polymersomes into the cell nucleus. Proceedings of the National Academy of Sciences of the United States of America, 117 (6). pp. 2770-2778.

Avsar, Saziye Yorulmaz and Kapinos, Larisa E. and Schoenenberger, Cora-Ann and Schertler, Gebhard F. X. and Muhle, Jonas and Meger, Benoit and Lim, Roderick Y. H. and Ostermaier, Martin K. and Lesca, Elena and Palivan, Cornelia G.. (2020) Immobilization of arrestin-3 on different biosensor platforms for evaluating GPCR binding. Physical Chemistry Chemical Physics, 22 (41). pp. 24086-24096.

Santos, José Carlos and Boucher, Dave and Schneider, Larisa Kapinos and Demarco, Benjamin and Dilucca, Marisa and Shkarina, Kateryna and Heilig, Rosalie and Chen, Kaiwen W. and Lim, Roderick Y. H. and Broz, Petr. (2020) Human GBP1 binds LPS to initiate assembly of a caspase-4 activating platform on cytosolic bacteria. Nature Communications, 11 (1). p. 3276.

2019

Panatala, Radhakrishnan and Barbato, Suncica and Kozai, Toshiya and Luo, Jinghui and Kapinos, Larisa E. and Lim, Roderick Y. H.. (2019) Nuclear Pore Membrane Proteins Self-Assemble into Nanopores. Biochemistry, 58 (6). pp. 484-488.

Kassianidou, Elena and Kalita, Joanna and Lim, Roderick Y. H.. (2019) The role of nucleocytoplasmic transport in mechanotransduction. Experimental cell research, 377 (1-2). pp. 86-93.

2018

Emilsson, Gustav and Xiong, Kunli and Sakiyama, Yusuke and Malekian, Bita and Gagnér, Viktor Ahlberg and Schoch, Rafael L. and Lim, Roderick Y. H. and Dahlin, Andreas B.. (2018) Polymer brushes in solid-state nanopores form an impenetrable entropic barrier for proteins. Nanoscale (10). pp. 4663-4669.

Ganier, Olivier and Schnerch, Dominik and Oertle, Philipp and Lim, Roderick Y. H. and Plodinec, Marija and Nigg, Erich A.. (2018) Structural centrosome aberrations promote non-cell-autonomous invasiveness. The EMBO journal. e98576.

Emilsson, Gustav and Sakiyama, Yusuke and Malekian, Bita and Xiong, Kunli and Adali-Kaya, Zeynep and Lim, Roderick Y. H. and Dahlin, Andreas B.. (2018) Gating Protein Transport in Solid State Nanopores by Single Molecule Recognition. ACS Central Science, 4 (8). pp. 1007-1014.

Eftekharzadeh, Bahareh and Daigle, J. Gavin and Kapinos, Larisa E. and Coyne, Alyssa and Schiantarelli, Julia and Carlomagno, Yari and Cook, Casey and Miller, Sean J. and Dujardin, Simon and Amaral, Ana S. and Grima, Jonathan C. and Bennet, Rachel E. and Tepper, Katharina and DeTure, Michael and Vanderburgh, Charles R. and Corjuc, Bianca T. and Devos, Sarah L. and Gonzalez, Jose Antonio and Chew, Jeannie and Vidensky, Svetlana and Gage, Fred H. and Mertens, Jerome and Troncoso, Juan and Mandelkow, Eckhard and Salvatella, Xavier and Lim, Roderick Y. H. and Petrucelli, Leonard and Wegmann, Susanne and Rothstein, Jeffrey D. and Hyman, Bradley T.. (2018) Tau Protein Disrupts Nucleocytoplasmic Transport in Alzheimer's Disease. Neuron, 99 (5). pp. 925-940.e7.

Zanetti-Dällenbach, Rosanna and Plodinec, Marija and Oertle, Philipp and Redling, Katharina and Obermann, Ellen C. and Lim, Roderick Y. H. and Schoenenberger, Cora-Ann. (2018) Length Scale Matters: Real-Time Elastography versus Nanomechanical Profiling by Atomic Force Microscopy for the Diagnosis of Breast Lesions. BioMed research international, 2018. p. 3840597.

Malekian, Bita and Schoch, Rafael L. and Robson, Timothy and Ferrand-Drake del Castillo, Gustav and Xiong, Kunli and Emilsson, Gustav and Kapinos, Larisa E. and Lim, Roderick Y. H. and Dahlin, Andreas B.. (2018) Detecting Selective Protein Binding inside Plasmonic Nanopores: Towards a Mimic of the Nuclear Pore Complex. Frontiers in Chemistry, 6. p. 637.

2017

Sakiyama, Yusuke and Panatala, Radhakrishnan and Lim, Roderick Y. H.. (2017) Structural dynamics of the nuclear pore complex. Seminars in Cell and Developmental Biology, 68. pp. 27-33.

Emilsson, Gustav and Schoch, Rafael L. and Oertle, Philipp and Xiong, Kunli and Lim, Roderick Y. H. and Dahlin, Andreas B.. (2017) Surface plasmon resonance methodology for monitoring polymerization kinetics and morphology changes of brushes - evaluated with poly(N-isopropylacrylamide). Applied Surface Science, 396. pp. 384-392.

Kapinos, Larisa E. and Huang, Binlu and Rencurel, Chantal and Lim, Roderick Y. H.. (2017) Karyopherins regulate nuclear pore complex barrier and transport function. Journal of Cell Biology, 216 (11). pp. 3609-3624.

Benning, Friederike M. C. and Sakiyama, Yusuke and Mazur, Adam and Bukhari, Habib S. T. and Lim, Roderick Y. H. and Maier, Timm. (2017) High-Speed Atomic Force Microscopy Visualization of the Dynamics of the Multienzyme Fatty Acid Synthase. ACS Nano, 11 (11). pp. 10852-10859.

Schoch, Rafael L. and Emilsson, Gustav and Dahlin, Andreas B. and Lim, Roderick Y. H.. (2017) Protein exclusion is preserved by temperature sensitive PEG brushes. Polymer, 132. pp. 362-367.

Luo, Wangxi and Ruba, Andrew and Takao, Daisuke and Zweifel, Ludovit P. and Lim, Roderick Y. H. and Verhey, Kristen J. and Yang, Weidong. (2017) Axonemal Lumen Dominates Cytosolic Protein Diffusion inside the Primary Cilium. Scientific Reports, 7. p. 15793.

2016

Zweifel, Ludovit P. and Shorubalko, Ivan and Lim, Roderick Y. H.. (2016) Helium scanning transmission ion microscopy and electrical characterization of glass nanocapillaries with reproducible tip geometries. ACS nano, 10 (2). pp. 1918-1925.

Sakiyama, Yusuke and Mazur, Adam and Kapinos, Larisa E. and Lim, Roderick Y. H.. (2016) Spatiotemporal dynamics of the nuclear pore complex transport barrier resolved by high-speed atomic force microscopy. Nature Nanotechnology (11). pp. 719-723.

Vovk, Andrei and Gu, Chad and Opferman, Michael G. and Kapinos, Larisa E. and Lim, Roderick Y. H. and Coalson, Rob D. and Jasnow, David and Zilman, Anton. (2016) Simple biophysics underpins collective conformations of the intrinsically disordered proteins of the Nuclear Pore Complex. eLife, 5. e10785.

Vujica, Suncica and Zelmer, Christina and Panatala, Radhakrishnan and Lim, Roderick Y. H.. (2016) Nucleocytoplasmic Transport: A Paradigm for Molecular Logistics in Artificial Systems. Chimia, 70 (6). pp. 413-417.

2015

Wagner, Raphael S. and Kapinos, Larisa E. and Marshall, Neil J. and Stewart, Murray and Lim, Roderick Y. H.. (2015) Promiscuous Binding of Karyopherinβ1 Modulates FG Nucleoporin Barrier Function and Expedites NTF2 Transport Kinetics. Biophysical journal, 108 (4). pp. 918-927.

Emilsson, Gustav and Schoch, Rafael L. and Feuz, Laurent and Höök, Fredrik and Lim, Roderick Y. H. and Dahlin, Andreas B.. (2015) Strongly Stretched Protein Resistant Poly(ethylene glycol) Brushes Prepared by Grafting-To. ACS applied materials & interfaces, Vol. 7, H. 14. pp. 7505-7515.

Plodinec, Marija and Lim, Roderick Y. H.. (2015) Nanomechanical characterization of living mammary tissues by atomic force microscopy. Methods in Molecular Biology, 1293. pp. 231-246.

Lim, Roderick Y. H. and Huang, Binlu and Kapinos, Larisa E.. (2015) How to operate a nuclear pore complex by Kap-centric control. Nucleus (Austin, Tex.), 6 (5). pp. 366-372.

2014

Kapinos, Larisa E. and Schoch, Rafael L. and Wagner, Raphael S. and Schleicher, Kai D. and Lim, Roderick Y. H.. (2014) Karyopherin-centric control of nuclear pores based on molecular occupancy and kinetic analysis of multivalent binding with FG nucleoporins. Biophysical journal, Vol. 106, H. 8. pp. 1751-1762.

Schleicher, Kai D. and Dettmer, Simon D. and Kapinos, Larisa E. and Pagliara, Stefano and Keyser, Ulrich F. and Jeney, Sylvia and Lim, Roderick Y. H.. (2014) Selective transport control on molecular velcro made from intrinsically disordered proteins. Nature nanotechnology, Vol. 9 H. 7 , S. 525–530.

Fuxreiter, Monika and Tóth-Petróczy, Agnes and Kraut, Daniel A. and Matouschek, Andreas T. and Lim, Roderick Y. H. and Xue, Bin and Kurgan, Lukasz and Uversky, Vladimir N.. (2014) Disordered Proteinaceous Machines. Chemical reviews, Vol. 114, H. 13 , S. 6806–6843.

2013

Schoch, Rafael L. and Lim, Roderick Y. H.. (2013) Non-interacting molecules as innate structural probes in surface plasmon resonance. Langmuir, Vol. 29, H. 12. pp. 4068-4076.

Halfter, Willi and Monnier, Christophe and Mueller, David and Oertle, Philipp and Uechi, Guy and Balasubramani, Manimalha and Safi, Farhad and Lim, Roderick and Loparic, Marko and Henrich, Paul Bernhard. (2013) The Bi-Functional Organization of Human Basement Membranes. PLoS ONE, 8 (7). e67660.

2012

Plodinec, M. and Loparic, M. and Monnier, C. A. and Obermann, E. C. and Zanetti-Dallenbach, R. and Oertle, P. and Hyotyla, J. T. and Aebi, U. and Bentires-Alj, M. and Lim, R. Y. H. and Schoenenberger, C. -A.. (2012) The nanomechanical signature of breast cancer. Nature nanotechnology, Vol. 7, H. 11. pp. 757-765.

Schoch, Rafael L. and Kapinos, Larisa E. and Lim, Roderick Y. H.. (2012) Nuclear transport receptor binding avidity triggers a self-healing collapse transition in FG-nucleoporin molecular brushes. Proceedings of the National Academy of Sciences of the United States of America, 109 (42). pp. 16911-16916.

Lim, R. Y. H. and Herrmann, H.. (2012) From structural architecture to cellular organization : celebrating the scientific contributions of Ueli Aebi on the occasion of his retirement. Journal of structural biology, Vol. 177, H. 1. pp. 1-2.

Henrich, Paul B. and Monnier, Christophe A. and Halfter, Willi and Haritoglou, Christos and Strauss, Rupert W. and Lim, Roderick Y. H. and Loparic, Marko. (2012) Nanoscale topographic and biomechanical studies of the human internal limiting membrane. Investigative ophthalmology & visual science, 53 (6). pp. 2561-2570.

Hyotyla, J. T. and Lim, R. Y. H.. (2012) Atomic force microscopy. In: Supramolecular chemistry. From molecules to nanomaterials, Vol. 2: Techniques. Oxford, pp. 659-668.

2011

Hyotyla, J. T. and Deng, J. and Lim, R. Y. H.. (2011) Synthetic Protein Targeting by the Intrinsic Biorecognition Functionality of Poly(ethylene glycol) Using PEG Antibodies as Biohybrid Molecular Adaptors. ACS nano, Vol. 5, H. 6. pp. 5180-5187.

Kowalczyk, S. W. and Kapinos, L. and Blosser, T. R. and Magalhaes, T. and van Nies, P. and Lim, R. Y. H. and Dekker, C.. (2011) Single-molecule transport across an individual biomimetic nuclear pore complex. Nature Nanotechnology, Vol. 6, H. 7. pp. 433-438.

2010

Backmann, Natalija and Kappeler, Natascha and Braun, Thomas and Huber, François and Lang, Hans-Peter and Gerber, Christoph and Lim, Roderick Y. H.. (2010) Sensing surface PEGylation with microcantilevers. Beilstein Journal of Nanotechnology, 1. pp. 3-13.

Peleg, O. and Lim, R. Y. H.. (2010) Converging on the function of intrinsically disordered nucleoporins in the nuclear pore complex. Biological Chemistry, 391 (7). pp. 719-730.

2009

Elad, N. and Maimon, T. and Frenkiel-Krispin, D. and Lim, R. Y. H. and Medalia, O.. (2009) Structural analysis of the nuclear pore complex by integrated approaches. Current Opinion in Structural Biology, Vol. 19, H. 2. pp. 226-232.

Lim, R. Y. H. and Deng, J.. (2009) Interaction forces and reversible collapse of a polymer brush-gated nanopore. ACS nano, Vol. 3, no. 10. pp. 2911-2918.

2008

Lim, Roderick Y. H. and Aebi, Ueli and Fahrenkrog, Birthe. (2008) Towards reconciling structure and function in the nuclear pore complex. Histochemistry and cell biology, 129 (2). pp. 105-116.

2007

Lim, R. Y. H. and Koser, J. and Huang, N. -P. and Schwarz-Herion, K. and Aebi, U.. (2007) Nanomechanical interactions of phenylalanine-glycine nucleoporins studied by single molecule force-volume spectroscopy. Journal of Structural Biology, Vol. 159, H. 2. pp. 277-289.

Lim, R. Y. H. and Fahrenkrog, B. and Koser, J. and Schwarz-Herion, K. and Deng, J. and Aebi, U.. (2007) Nanomechanical basis of selective gating by the nuclear pore complex. Science, Vol. 318, no. 5850. pp. 640-643.

Lim, R. Y. H.. (2007) Gate-crashing the nuclear pore complex. Structure: with folding and design, Vol. 15, H. 8. pp. 889-891.

2006

Lim, Roderick Y. H. and Huang, Ning-Ping and Köser, Joachim and Deng, Jie and Lau, K. H. Aaron and Schwarz-Herion, Kyrill and Fahrenkrog, Birthe and Aebi, Ueli. (2006) Flexible phenylalanine-glycine nucleoporins as entropic barriers to nucleocytoplasmic transport. Proceedings of the National Academy of Sciences of the United States of America, 103 (25). pp. 9512-9517.

Lim, R. Y. H. and Fahrenkrog, B.. (2006) The nuclear pore complex up close. Current opinion in cell biology, Vol. 18, H. 3. pp. 342-347.

Lim, R. Y. H. and Aebi, U. and Stoffler, D.. (2006) From the trap to the basket : getting to the bottom of the nuclear pore complex. Chromosoma, Vol. 115, H. 1. pp. 15-26.

2005

Lim, R. Y. H. and Aebi, U.. (2005) In silico access to the nuclear pore complex. Structure: with folding and design, Vol. 13, H. 12. pp. 1741-1743.

2004

Lim, Roderick Y. H. and O'Shea, S. J.. (2004) Discrete solvation layering in confined binary liquids. Langmuir, 20 (12). pp. 4916-4919.

2002

Lim, R. and Li, S. F. Y. and O'Shea, S. J.. (2002) Solvation forces using sample-modulation atomic force microscopy. Langmuir, 18 (16). pp. 6116-6124.

Lim, R. and O'Shea, S. J.. (2002) Solvation forces in branched molecular liquids. Physical Review Letters, 88 (24). p. 246101.

Loh, K. P. and Xie, X. N. and Lim, Y. H. and Teo, E. J. and Zheng, J. C. and Ando, T.. (2002) Surface oxygenation studies on (100)-oriented diamond using an atom beam source and local anodic oxidation. Surface Science, 505. pp. 93-114.

Tripathy, S. and Chua, S. J. and Ramam, A. and Sia, E. K. and Pan, J. S. and Lim, R. and Yu, G. and Shen, Z. X.. (2002) Electronic and vibronic properties of Mg-doped GaN: The influence of etching and annealing. Journal of Applied Physics, 91 (5). pp. 3398-3407.

2001

Xie, X. N. and Lim, R. and Li, J. and Li, S. F. Y. and Loh, K. P.. (2001) Atomic hydrogen beam etching of carbon superstructures on 6H-SiC(0001) studied by reflection high-energy electron diffraction. Diamond and Related Materials, 10 (3-7). pp. 1218-1223.

2000

Lim, R. and Li, J. and Li, S. F. Y. and Feng, Z. and Valiyaveettil, S.. (2000) The formation of two-dimensional supramolecular chiral lamellae by diamide molecules at the solution/graphite interface: A scanning tunneling microscopy study. Langmuir, 16 (17). pp. 7023-7030.