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Angst, Pascal and Ameline, Camille and Haag, Christoph R. and Ben-Ami, Frida and Ebert, Dieter and Fields, Peter D.. (2023) Genetic Drift Shapes the Evolution of a Highly Dynamic Metapopulation. Molecular Biology and Evolution , 39 (12). msac264.

Van Damme, Kay and Cornetti, Luca and Fields, Peter D. and Ebert, Dieter. (2022) Whole-Genome Phylogenetic Reconstruction as a Powerful Tool to Reveal Homoplasy and Ancient Rapid Radiation in Waterflea Evolution. Systematic Biology, 71 (4). pp. 777-787.

Ameline, Camille and Voegtli, Felix and Andras, Jason and Dexter, Eric and Engelstädter, Jan and Ebert, Dieter. (2022) Genetic slippage after sex maintains diversity for parasite resistance in a natural host population. Science Advances, 8 (46). eabn0051.

Luo, Mingyu and Wang, Shaopeng and Saavedra, Serguei and Ebert, Dieter and Altermatt, Florian. (2022) Multispecies coexistence in fragmented landscapes. Proceedings of the National Academy of Sciences of the United States of America, 119 (37). e2201503119.

Santos, Joana L. and Ebert, Dieter. (2022) The effects of temperature and host-parasite interactions on parasite persistence in a planktonic crustacean. Journal of Freshwater Ecology, 37 (1). pp. 555-568.

Heim, Vital and Luescher, Daniel and Hottinger, Juergen and Ebert, Dieter. (2022) Development and validation of a drill attachment for faster and safer deployments of fin-mounted geolocators in large-bodied sharks. Animal Biotelemetry, 10 (1). ARTN 33.

Ebert, Dieter. (2022) Daphnia as a versatile model system in ecology and evolution. EvoDevo, 13 (1). p. 16.

Amandine, Cornille and Ebert, Dieter and Stukenbrock, Eva and Rodríguez de la Vega, Ricardo C. and Tiffin, Peter and Croll, Daniel and Tellier, Aurélien. (2022) Unraveling coevolutionary dynamics using ecological genomics. Trends in Genetics, 38 (10). pp. 1003-1012.

de Albuquerque, Nathalia R. M. and Haag, Karen L. and Fields, Peter D. and Cabalzar, Andrea and Ben-Ami, Frida and Pombert, Jean-François and Ebert, Dieter. (2022) A new microsporidian parasite, Ordospora pajunii sp. nov (Ordosporidae), of Daphnia longispina highlights the value of genomic data for delineating species boundaries. The Journal of eukaryotic microbiology, 69 (3). e12902.

Angst, Pascal and Ebert, Dieter and Fields, Peter D.. (2022) Demographic history shapes genomic variation in an intracellular parasite with a wide geographical distribution. Molecular Ecology, 31 (9). pp. 2528-2544.

Fields, Peter D. and McTaggart, Seanna and Reisser, Céline M. O. and Haag, Christoph and Palmer, William H. and Little, Tom J. and Ebert, Dieter and Obbard, Darren J.. (2022) Population-Genomic Analysis Identifies a Low Rate of Global Adaptive Fixation in the Proteins of the Cyclical Parthenogen Daphnia magna. Molecular Biology and Evolution , 39 (3). msac048.

Santos, Joana L. and Ebert, Dieter. (2022) Trehalose provisioning in Daphnia resting stages reflects local adaptation to the harshness of diapause conditions. Biology Letters, 18 (2). p. 20210615.

Duneau, David and Möst, Markus and Ebert, Dieter. (2022) Evolution of sperm morphology in a crustacean genus with fertilization inside an open brood pouch. Peer Community Journal, 2. e63.

Ameline, Camille and Bourgeois, Yann and Vögtli, Felix and Savola, Eevi and Andras, Jason and Engelstädter, Jan and Ebert, Dieter. (2021) A two-locus system with strong epistasis underlies rapid parasite-mediated evolution of host resistance. Molecular Biology and Evolution , 38 (4). pp. 1512-1528.

Bourgeois, Yann and Fields, Peter D. and Bento, Gilberto and Ebert, Dieter. (2021) Balancing Selection for Pathogen Resistance Reveals an Intercontinental Signature of Red Queen Coevolution. Molecular Biology and Evolution , 38 (11). pp. 4918-4933.

Vega, Fernando E. and Emche, Sarah and Shao, Jonathan and Simpkins, Ann and Summers, Ryan M. and Mock, Meredith B. and Ebert, Dieter and Infante, Francisco and Aoki, Sayaka and Maul, Jude E.. (2021) Cultivation and Genome Sequencing of Bacteria Isolated From the Coffee Berry Borer (Hypothenemus hampei), With Emphasis on the Role of Caffeine Degradation. FRONTIERS IN MICROBIOLOGY, 12. ARTN 644768.

Fredericksen, Maridel and Ameline, Camille and Krebs, Michelle and Hüssy, Benjamin and Fields, Peter D. and Andras, Jason P. and Ebert, Dieter. (2021) Infection phenotypes of a coevolving parasite are highly diverse, structured, and specific. Evolution: international journal of organic evolution, 75 (10). pp. 2540-2554.

Cornetti, Luca and Ebert, Dieter. (2021) No evidence for genetic sex determination in Daphnia magna. Royal Society open science, 8 (6). p. 202292.

Ameline, Camille and Bourgeois, Yann and Vögtli, Felix and Savola, Eevi and Andras, Jason and Engelstädter, Jan and Ebert, Dieter. (2021) Erratum to: A Two-Locus System with Strong Epistasis Underlies Rapid Parasite-Mediated Evolution of Host Resistance. Molecular biology and evolution, 38 (6). p. 2674.

Cornetti, Luca and Fields, Peter D. and Ebert, Dieter. (2021) Genomic characterization of selfing in the cyclic parthenogen Daphnia magna. Journal of evolutionary biology, 34 (5). pp. 792-802.

Ebert, Dieter and Fields, Peter D.. (2020) Host-parasite co-evolution and its genomic signature. Nature reviews. Genetics, 21 (12). pp. 754-768.

Andras, Jason P. and Fields, Peter D. and Du Pasquier, Louis and Fredericksen, Maridel and Ebert, Dieter. (2020) Genome-Wide Association Analysis Identifies a Genetic Basis of Infectivity in a Model Bacterial Pathogen. Molecular Biology and Evolution , 37 (12). pp. 3439-3452.

de Albuquerque, Nathalia Rammé Medeiros and Ebert, Dieter and Haag, Karen Luisa. (2020) Transposable element abundance correlates with mode of transmission in microsporidian parasites. Mobile DNA, 11. p. 19.

Bento, Gilberto and Fields, Peter D. and Duneau, David and Ebert, Dieter. (2020) An alternative route of bacterial infection associated with a novel resistance locus in the Daphnia-Pasteuria host-parasite system. Heredity, 125 (4). pp. 173-183.

Ho, Eddie K. H. and Macrae, Fenner and Latta, Leigh C. and McIlroy, Peter and Ebert, Dieter and Fields, Peter D. and Benner, Maia J. and Schaack, Sarah. (2020) High and Highly Variable Spontaneous Mutation Rates in Daphnia. Molecular Biology and Evolution , 37 (11). pp. 3258-3266.

Haag, Karen L. and Pombert, Jean-François and Sun, Yukun and de Albuquerque, Nathalia Rammé M. and Batliner, Brendan and Fields, Peter and Lopes, Tiago Falcon and Ebert, Dieter. (2020) Microsporidia with Vertical Transmission Were Likely Shaped by Nonadaptive Processes. Genome Biology and Evolution, 12 (1). pp. 3599-3614.

Seefeldt, Leonie and Ebert, Dieter. (2019) Temperature - versus precipitation-limitation shape local temperature tolerance in a Holarctic freshwater crustacean. Proceedings of the Royal Society. Series B, Biological Sciences, 286 (1907). p. 20190929.

Savola, Eevi and Ebert, Dieter. (2019) Assessment of parasite virulence in a natural population of a planktonic crustacean. BMC ecology, 19. p. 14.

Narr, Charlotte F. and Ebert, Dieter and Bastille-Rousseau, Guillaume and Frost, Paul C.. (2019) Nutrient availability affects the prevalence of a microsporidian parasite. JOURNAL OF ANIMAL ECOLOGY, 88 (4). pp. 579-590.

Mushegian, Alexandra A. and Arbore, Roberto and Walser, Jean-Claude and Ebert, Dieter. (2019) Environmental Sources of Bacteria and Genetic Variation in Behavior Influence Host-Associated Microbiota. Applied and Environmental Microbiology, 85 (8). e01547-18.

Martin-Creuzburg, Dominik and Coggins, B. L. and Ebert, Dieter and Yampolsky, Lev Y.. (2019) Rearing Temperature and Fatty Acid Supplementation Jointly Affect Lipid Fluorescence Polarization and Heat Tolerance in Daphnia. Physiological and Biochemical Zoology, 92 (4). pp. 408-418.

Ho, Eddie K. H. and Macrae, Fenner and Latta, Leigh C. and Benner, Maia J. and Sun, Cheng and Ebert, Dieter and Schaack, Sarah. (2019) Intraspecific Variation in Microsatellite Mutation Profiles in Daphnia magna. MOLECULAR BIOLOGY AND EVOLUTION, 36 (9). pp. 1942-1954.

Hall, Matthew D. and Routtu, Jarkko and Ebert, Dieter. (2019) Dissecting the genetic architecture of a stepwise infection process. Molecular Ecology, 28 (17). pp. 3942-3957.

Dukić, Marinela and Berner, Daniel and Haag, Christoph R. and Ebert, Dieter. (2019) How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna. Journal of Evolutionary Biology, 32 (6). pp. 619-628.

Czypionka, Till and Fields, Peter D. and Routtu, Jarkko and van den Berg, Edwin and Ebert, Dieter and De Meester, Luc. (2019) The genetic architecture underlying diapause termination in a planktonic crustacean. Molecular Ecology, 28 (5). pp. 998-1008.

Cornetti, Luca and Fields, Peter D. and Van Damme, Kay and Ebert, Dieter. (2019) A fossil-calibrated phylogenomic analysis of Daphnia and the Daphniidae. Molecular Phylogenetics and Evolution, 137. pp. 250-262.

Brun, Nadja R. and Fields, Peter D. and Horsfield, Samuel and Mirbahai, Leda and Ebert, Dieter and Colbourne, John K. and Fent, Karl. (2019) Mixtures of Aluminum and Indium Induce More than Additive Phenotypic and Toxicogenomic Responses in Daphnia magna. Environmental Science and Technology, 53 (3). pp. 1639-1649.

Mushegian, Alexandra A. and Arbore, Roberto and Walser, Jean-Claude and Ebert, Dieter. (2019) Data from: Environmental sources of bacteria and genetic variation in behavior influence host-associated microbiota. Dryad. p. 1.

Mushegian, Alexandra and Walser, Jean-Claude and Sullam, Karen E. and Ebert, Dieter. (2018) The microbiota of diapause: how host-microbe associations are formed after dormancy in an aquatic crustacean. Journal of Animal Ecology, 87 (2). pp. 400-413.

Andras, Jason P. and Fields, Peter D. and Ebert, Dieter. (2018) Spatial population genetic structure of a bacterial parasite in close coevolution with its host. Molecular Ecology, 27 (6). pp. 1371-1384.

Booksmythe, Isobel and Gerber, Nina and Ebert, Dieter and Kokko, Hanna. (2018) Daphnia females adjust sex allocation in response to current sex ratio and density. Ecology Letters, 21 (5). pp. 629-637.

Ebert, Bettina and Ebert, Dieter and Koebsch, Katrin and Maser, Edmund and Kisiela, Michael. (2018) Carbonyl reductases from Daphnia are regulated by redox cycling compounds. Febs Journal, 285 (15). pp. 2869-2887.

Ebert, Dieter. (2018) Open questions: what are the genes underlying antagonistic coevolution? BMC Biology, 16 (114). p. 1.

Fields, Peter D. and Obbard, Darren J. and McTaggart, Seanna J. and Galimov, Yan and Little, Tom J. and Ebert, Dieter. (2018) Mitogenome phylogeographic analysis of a planktonic crustacean. Molecular Phylogenetics and Evolution, 129. pp. 138-148.

Gerber, Nina and Kokko, Hanna and Ebert, Dieter and Booksmythe, Isobel. (2018) Daphnia invest in sexual reproduction when its relative costs are reduced. Proceedings of the Royal Society B-Biological Sciences, 285 (1871). pp. 1-9.

Preiswerk, David and Walser, Jean-Claude and Ebert, Dieter. (2018) Temporal dynamics of microbiota before and after host death. Isme Journal, 12 (8). pp. 2076-2085.

Sison-Mangus, Marilou P. and Metzger, César M. J. A. and Ebert, Dieter. (2018) Host genotype-specific microbiota do not influence the susceptibility of D. magna to a bacterial pathogen. Scientific Reports, 8 (9407). pp. 1-10.

Sullam, Karen E. and Pichon, Samuel and Schaer, Tobias M. M. and Ebert, Dieter. (2018) The Combined Effect of Temperature and Host Clonal Line on the Microbiota of a Planktonic Crustacean. Microbial Ecology, 76 (2). pp. 506-517.

Toenshoff, Elena R. and Fields, Peter D. and Bourgeois, Yann X. and Ebert, Dieter. (2018) The End of a 60-year Riddle: Identification and Genomic Characterization of an Iridovirus, the Causative Agent of White Fat Cell Disease in Zooplankton. G3-Genes Genomes Genetics, 8 (4). pp. 1259-1272.

Bento, Gilberto and Routtu, Jarkko and Fields, Peter D. and Bourgeois, Yann X. and Du Pasquier, Louis and Ebert, Dieter. (2017) The genetic basis of resistance and matching-allele interactions of a host-parasite system: The Daphnia magna-Pasteuria ramosa model. PLoS Genetics, 13 (2). e1006596.

Bourgeois, Yann X. and Roulin, Anne C. and Muller, Kristina and Ebert, Dieter. (2017) Parasitism drives host genome evolution: Insights from the Pasteuria ramosa-Daphnia magna system. Evolution, 71 (4). pp. 1106-1113.

Brun, Nadja R. and Beenakker, Margreet M. T. and Hunting, Ellard R. and Ebert, Dieter and Vijver, Martina G.. (2017) Brood pouch-mediated polystyrene nanoparticle uptake during Daphnia magna embryogenesis. Nanotoxicology, 11 (8). pp. 1059-1069.

Hall, Matthew D. and Bento, Gilberto and Ebert, Dieter. (2017) The Evolutionary Consequences of Stepwise Infection Processes. Trends in Ecology & Evolution, 32 (8). pp. 612-623.

Krebs, Michelle and Routtu, Jarkko and Ebert, Dieter. (2017) QTL mapping of a natural genetic polymorphism for long-term parasite persistence in Daphnia populations. Parasitology, 144 (13). pp. 1686-1694.

Mushegian, Alexandra A. and Ebert, Dieter. (2017) Presence of microbiota reverses the relative performance of Daphnia on two experimental diet. Zoology, 125. pp. 29-31.

Duneau, David and Ebert, Dieter and Du Pasquier, Louis. (2016) Infections by Pasteuria do not protect its natural host Daphnia magna from subsequent infections. Developmental and comparative immunology, 57. pp. 120-125.

Mushegian, Alexandra A. and Ebert, Dieter. (2016) Rethinking "mutualism" in diverse host-symbiont communities. Bioessays, 38 (1). pp. 100-108.

Michel, Jessica and Ebert, Dieter and Hall, Matthew D.. (2016) The trans-generational impact of population density signals on host-parasite interactions. BMC Evolutionary Biology, 16 (1). p. 254.

Dukić, Marinela and Berner, Daniel and Roesti, Marius and Haag, Christoph R. and Ebert, Dieter. (2016) A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna. BMC genetics, 17 (1). p. 137.

Roulin, Anne C. and Bourgeois, Yann and Stiefel, Urs and Walser, Jean-Claude and Ebert, Dieter. (2016) A Photoreceptor Contributes to the Natural Variation of Diapause Induction in Daphnia magna. Molecular Biology and Evolution , 33 (12). pp. 3194-3204.

Schlotz, Nina and Roulin, Anne and Ebert, Dieter and Martin-Creuzburg, Dominik. (2016) Combined effects of dietary polyunsaturated fatty acids and parasite exposure on eicosanoid-related gene expression in an invertebrate model. Comparative Biochemistry and Physiology, Part A: Molecular and Integrative Physiology, 201. pp. 115-123.

Orsini, Luisa and Gilbert, Donald and Podicheti, Ram and Jansen, Mieke and Brown, James B. and Solari, Omid Shams and Spanier, Katina I. and Colbourne, John K. and Rush, Douglas and Decaestecker, Ellen and Asselman, Jana and De Schamphelaere, Karel A. C. and Ebert, Dieter and Haag, Christoph R. and Kvist, Jouni and Laforsch, Christian and Petrusek, Adam and Beckerman, Andrew P. and Little, Tom J. and Chaturvedi, Anurag and Pfrender, Michael E. and De Meester, Luc and Frilander, Mikko J.. (2016) Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors. Scientific Data, 3. p. 160030.

Ebert, Dieter and Duneau, David and Hall, Matthew D. and Luijckx, Pepijn and Andras, Jason P. and Du Pasquier, Louis and Ben-Ami, Frida. (2016) A Population Biology Perspective on the Stepwise Infection Process of the Bacterial Pathogen Pasteuria ramosa in Daphnia. Advances in Parasitology , 91. pp. 265-310.

Metzger, César M. J. A. and Luijckx, Pepijn and Bento, Gilberto and Mariadassou, Mahendra and Ebert, Dieter. (2016) The Red Queen lives: Epistasis between linked resistance loci. Evolution, 70 (2). pp. 480-487.

Rabajante, Jomar F. and Tubay, Jerrold M. and Ito, Hiromu and Uehara, Takashi and Kakishima, Satoshi and Morita, Satoru and Yoshimura, Jin and Ebert, Dieter. (2016) Host-parasite Red Queen dynamics with phase-locked rare genotypes. Science Advances, 2 (3). e1501548.

Mushegian, Alexandra A. and Burcklen, Elodie and Schär, Tobias M. M. and Ebert, Dieter. (2016) Temperature-dependent benefits of bacterial exposure in embryonic development of Daphnia magna resting eggs. Journal of Experimental Biology , 219 (6). pp. 897-904.

Altermatt, Florian and Ebert, Dieter. (2016) Reduced flight-to-light behaviour of moth populations exposed to long-term urban light pollution. Biology Letters, 12 (4). p. 20160111.

Arbore, R. and Andras, J. P. and Routtu, J. and Ebert, Dieter. (2016) Ecological genetics of sediment browsing behaviour in a planktonic crustacean. Journal of Evolutionary Biology, 29 (10). pp. 1999-2009.

Retnaningdyah, C. and Ebert, Dieter. (2016) Bleach Solution Requirement for Hatching of Daphnia magna Resting Eggs. Journal of Tropical Life Science, 6. pp. 136-141.

Lange, Benjamin and Kaufmann, Andrea Patricia and Ebert, Dieter. (2015) Genetic, ecological and geographic covariables explaining host range and specificity of a microsporidian parasite. The journal of animal ecology, 84 (6). pp. 1711-1719.

Roulin, Anne C. and Mariadassou, Mahendra and Hall, Matthew D. and Walser, Jean-Claude and Haag, Christoph and Ebert, Dieter. (2015) High genetic variation in resting-stage production in a metapopulation: Is there evidence for local adaptation? Evolution, 69 (10). pp. 2747-2756.

Mariadassou, Mahendra and Pichon, Samuel and Ebert, Dieter. (2015) Microbial ecosystems are dominated by specialist taxa. Ecology letters, 18 (9). pp. 974-982.

Fields, Peter D. and Reisser, Céline and Dukić, Marinela and Haag, Christoph R. and Ebert, Dieter. (2015) Genes mirror geography in Daphnia magna. Molecular ecology, 24 (17). pp. 4521-4536.

Rabajante, Jomar F. and Tubay, Jerrold M. and Uehara, Takashi and Morita, Satoru and Ebert, Dieter and Yoshimura, Jin. (2015) Red Queen dynamics in multi-host and multi-parasite interaction system. Scientific Reports, 5. p. 10004.

Clerc, Melanie and Ebert, Dieter and Hall, Matthew D.. (2015) Expression of parasite genetic variation changes over the course of infection: implications of within-host dynamics for the evolution of virulence. Proceedings of the Royal Society. Series B, Biological sciences, 282 (1804). p. 20142820.

Sison-Mangus, M. P. and Mushegian, A. A. and Ebert, Dieter. (2015) Water fleas require microbiota for survival, growth and reproduction. ISME Journal, 9 (1). pp. 59-67.

Routtu, J. and Ebert, Dieter. (2015) Genetic architecture of resistance in Daphnia hosts against two species of host-specific parasites. Heredity, 114 (2). pp. 241-248.

Pombert, Jean-François and Haag, Karen Luisa and Beidas, Shadi and Ebert, Dieter and Keeling, Patrick J.. (2015) The Ordospora colligata genome: Evolution of extreme reduction in microsporidia and host-to-parasite horizontal gene transfer. mBio, 6 (1). e02400-14.

Luijckx, P. and Duneau, D. and Andras, J. P. and Ebert, Dieter. (2014) Cross-species infection trials reveal cryptic parasite varieties and a putative polymorphism shared among host species. Evolution, 68 (2). pp. 577-586.

Yampolsky, Lev Y. and Schaer, Tobias M. M. and Ebert, Dieter. (2014) Adaptive phenotypic plasticity and local adaptation for temperature tolerance in freshwater zooplankton. Proceedings of the Royal Society. Series B, Biological Sciences, 281 (1776). p. 20132744.

Chipman, Ariel D. and Ferrier, David E. K. and Brena, Carlo and Qu, Jiaxin and Hughes, Daniel S. T. and Schröder, Reinhard and Torres-Oliva, Montserrat and Znassi, Nadia and Jiang, Huaiyang and Almeida, Francisca C. and Alonso, Claudio R. and Apostolou, Zivkos and Aqrawi, Peshtewani and Arthur, Wallace and Barna, Jennifer C. J. and Blankenburg, Kerstin P. and Brites, Daniela and Capella-Gutiérrez, Salvador and Coyle, Marcus and Dearden, Peter K. and Du Pasquier, Louis and Duncan, Elizabeth J. and Ebert, Dieter and Eibner, Cornelius and Erikson, Galina and Evans, Peter D. and Extavour, Cassandra G. and Francisco, Liezl and Gabaldón, Toni and Gillis, William J. and Goodwin-Horn, Elizabeth A. and Green, Jack E. and Griffiths-Jones, Sam and Grimmelikhuijzen, Cornelis J. P. and Gubbala, Sai and Guigó, Roderic and Han, Yi and Hauser, Frank and Havlak, Paul and Hayden, Luke and Helbing, Sophie and Holder, Michael and Hui, Jerome H. L. and Hunn, Julia P. and Hunnekuhl, Vera S. and Jackson, LaRonda and Javaid, Mehwish and Jhangiani, Shalini N. and Jiggins, Francis M. and Jones, Tamsin E. and Kaiser, Tobias S. and Kalra, Divya and Kenny, Nathan J. and Korchina, Viktoriya and Kovar, Christie L. and Kraus, F. Bernhard and Lapraz, François and Lee, Sandra L. and Lv, Jie and Mandapat, Christigale and Manning, Gerard and Mariotti, Marco and Mata, Robert and Mathew, Tittu and Neumann, Tobias and Newsham, Irene and Ngo, Dinh N. and Ninova, Maria and Okwuonu, Geoffrey and Ongeri, Fiona and Palmer, William J. and Patil, Shobha and Patraquim, Pedro and Pham, Christopher and Pu, Ling-Ling and Putman, Nicholas H. and Rabouille, Catherine and Ramos, Olivia Mendivil and Rhodes, Adelaide C. and Robertson, Helen E. and Robertson, Hugh M. and Ronshaugen, Matthew and Rozas, Julio and Saada, Nehad and Sánchez-Gracia, Alejandro and Scherer, Steven E. and Schurko, Andrew M. and Siggens, Kenneth W. and Simmons, DeNard and Stief, Anna and Stolle, Eckart and Telford, Maximilian J. and Tessmar-Raible, Kristin and Thornton, Rebecca and van der Zee, Maurijn and von Haeseler, Arndt and Williams, James M. and Willis, Judith H. and Wu, Yuanqing and Zou, Xiaoyan and Lawson, Daniel and Muzny, Donna M. and Worley, Kim C. and Gibbs, Richard A. and Akam, Michael and Richards, Stephen. (2014) The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede strigamia maritima. PLoS biology, 12 (11). e1002005.

Routtu, J. and Hall, M. D. and Albere, B. and Beisel, C. and Bergeron, R. D. and Chaturvedi, A. and Choi, J. H. and Colbourne, J. and De Meester, L. and Stephens, M. T. and Stelzer, C. P. and Solorzano, E. and Thomas, W. K. and Pfrender, M. E. and Ebert, Dieter. (2014) An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits. BMC genomics, Vol. 15 , 1033.

Lange, B. and Reuter, M. and Ebert, Dieter and Muylaert, K. and Decaestecker, E.. (2014) Diet quality determines interspecific parasite interactions in host populations. Ecology and evolution, Vol. 4, H. 15. pp. 3093-3102.

Haag, K. L. and James, T. Y. and Pombert, J. F. and Larsson, R. and Schaer, T. M. M. and Refardt, D. and Ebert, Dieter. (2014) Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites. Proceedings of the National Academy of Sciences of the United States of America, Vol. 111, no. 43. pp. 15480-15485.

Sheikh-Jabbari, E. and Hall, M. D. and Ben-Ami, F. and Ebert, Dieter. (2014) The expression of virulence for a mixed-mode transmitted parasite in a diapausing host. Parasitology, 141 (8). pp. 1097-1107.

Antonovics, Janis and Boots, Mike and Ebert, Dieter and Koskella, Britt and Poss, Mary and Sadd, Ben M.. (2013) The origin of specificity by means of natural selection: evolved and nonhost resistance in host-pathogen interactions. Evolution, 67 (1). pp. 1-9.

Hall, Matthew D. and Vettiger, Andrea and Ebert, Dieter. (2013) Interactions between environmental stressors: the influence of salinity on host-parasite interactions between Daphnia magna and Pasteuria ramosa. Oecologia, 171 (4). pp. 789-796.

Roulin, Anne C. and Routtu, Jarkko and Hall, Matthew D. and Janicke, Tim and Colson, Isabelle and Haag, Christoph R. and Ebert, Dieter. (2013) Local adaptation of sex induction in a facultative sexual crustacean: insights from QTL mapping and natural populations of Daphnia magna. Molecular Ecology, 22 (13). pp. 3567-3579.

Haag, Karen L. and Traunecker, Emmanuel and Ebert, Dieter. (2013) Single-nucleotide polymorphisms of two closely related microsporidian parasites suggest a clonal population expansion after the last glaciation. Molecular Ecology, 22 (2). pp. 314-326.

Schlotz, Nina and Ebert, Dieter and Martin-Creuzburg, Dominik. (2013) Dietary supply with polyunsaturated fatty acids and resulting maternal effects influence host -- parasite interactions. BMC ecology, Vol. 13 , 41.

Brites, D. and Brena, C. and Ebert, Dieter and Du Pasquier, L.. (2013) More than one way to produce protein diversity: duplication and limited alternative splicing of an adhesion molecule gene in basal arthropods. Evolution, 67 (10). pp. 2999-3011.

Haag, K. L. and Sheikh-Jabbari, E. and Ben-Ami, F. and Ebert, Dieter. (2013) Microsatellite and single-nucleotide polymorphisms indicate recurrent transitions to asexuality in a microsporidian parasite. Journal of Evolutionary Biology, 26 (5). pp. 1117-1128.

Hall, Matthew D. and Ebert, Dieter. (2013) The genetics of infectious disease susceptibility: has the evidence for epistasis been overestimated? BMC biology, Vol. 11 , Art. 79.

Luijckx, Pepijn and Fienberg, Harris and Duneau, David and Ebert, Dieter. (2013) A matching-allele model explains host resistance to parasites. Current Biology, 23 (12). pp. 1085-1088.

Andras, J. P. and Ebert, Dieter. (2013) A novel approach to parasite population genetics: experimental infection reveals geographic differentiation, recombination and host-mediated population structure in Pasteuria ramosa, a bacterial parasite of Daphnia. Molecular Ecology, 22 (4). pp. 972-986.

Ebert, Dieter. (2013) The epidemiology and evolution of symbionts with mixed-mode Transmission. Annual Review of Ecology, Evolution, and Systematics, 44. pp. 623-643.

Ebert, Dieter and Hottinger, Jürgen W. and Pajunen, V. Ilmari. (2013) Unsuitable habitat patches lead to severe underestimation of dynamics and gene flow in a zooplankton metapopulation. The Journal of Animal Ecology, 82 (4). pp. 759-769.

Kawecki, T. J. and Lenski, R. E. and Ebert, Dieter and Hollis, B. and Olivieri, I. and Whitlock, M. C.. (2012) Experimental evolution. Trends in Ecology & Evolution, 27 (10). pp. 547-560.

Luijckx, P. and Fienberg, H. and Duneau, D. and Ebert, Dieter. (2012) Resistance to a bacterial parasite in the crustacean Daphnia magna shows Mendelian segregation with dominance. Heredity, 108 (5). pp. 547-551.

Refardt, D. and Ebert, Dieter. (2012) The impact of infection on host competition and its relationship to parasite persistence in a Daphnia-microparasite system. Evolutionary Ecology, 26 (1). pp. 95-107.

Duneau, D. and Ebert, Dieter. (2012) Host sexual dimorphism and parasite adaptation. PLoS biology, Vol. 10, H. 2 , e1001271.

Mennerat, A. and Hamre, L. and Ebert, Dieter and Nilsen, F. and Da Vidova, M. and Skorping, A.. (2012) Life history and virulence are linked in the ectoparasitic salmon louse Lepeophtheirus salmonis. Journal of Evolutionary Biology, 25 (5). pp. 856-861.

Hall, M. D. and Ebert, Dieter. (2012) Disentangling the influence of parasite genotype, host genotype and maternal environment on different stages of bacterial infection in Daphnia magna. Proceedings of the Royal Society. Series B, Biological sciences, 279 (1741). pp. 3176-3183.

Duneau, D. and Ebert, Dieter. (2012) The role of moulting in parasite defense. Proceedings of the Royal Society. Series B, Biological Sciences, 279 (1740). pp. 3049-3054.

Kawecki, T. J. and Lenski, R. E. and Ebert, Dieter and Hollis, B. and Olivieri, I. and Whitlock, M. C.. (2012) The value of complementary approaches in evolutionary research: reply to Magalhães and Matos. Trends in Ecology & Evolution, 27 (12). pp. 650-651.

Le Codiac, Marion and Simon, Marianne and Marchetti, Anna and Ebert, Dieter and Cosson, Pierre. (2012) Daphnia magna, a host to evaluate bacterial virulence. Applied and Environmental Microbiology, 78. pp. 593-595.

Haag, K. L. and Larsson, J. I. R. and Refardt, D. and Ebert, Dieter. (2011) Cytological and molecular description of Hamiltosporidium tvaerminnensis gen. et sp. nov., a microsporidian parasite of Daphnia magna, and establishment of Hamiltosporidium magnivora comb. nov. Parasitology, Vol. 138, H. 4. pp. 447-462.

Luickx, P. and Ben-Ami, F. and Mouton, L. and Du Pasquier, L. and Ebert, Dieter. (2011) Cloning of the unculturable parasite Pasteuria ramosa and its Daphnia host reveals extreme genotype-genotype interactions. Ecology letters, 14 (2). pp. 125-131.

Lass, S. and Hottinger, J. W. and Fabbro, T. and Ebert, Dieter. (2011) Converging seasonal prevalence dynamics in experimental epidemics. BMC ecology, Vol. 11 , 14.

Brites, D. and Encinas-Viso, F. and Ebert, Dieter and Du Pasquier, L. and Haag, C. R.. (2011) Population genetics of duplicated alternatively spliced exons of the dscam gene in Daphnia and Drosophila. PLoS ONE, Vol. 6, H. 12 , e27947.

Duneau, D. and Luijckx, P. and Ben-Ami, F. and Laforsch, C. and Ebert, Dieter. (2011) Resolving the infection process reveals striking differences in the contribution of environment, genetics and phylogeny to host-parasite interactions. BMC biology, Vol. 9 , Art. 11.

Ebert, Dieter. (2011) A genome for the environment. Science, 331 (6017). pp. 539-540.

McElroy, Kerensa and Mouton, Laurence and Du Pasquier, Louis and Qi, Weihong and Ebert, Dieter . (2011) Characterisation of a large family of polymorphic collagen-like proteins in the endospore-forming bacterium Pasteuria ramosa. Research in Microbiology, 162 (7). pp. 701-714.

Ben-Ami, F. and Rigaud, T. and Ebert, Dieter. (2011) The expression of virulence during double infections by different parasites with conflicting host exploitation and transmission strategies. Journal of Evolutionary Biology, 24 (6). pp. 1307-1316.

Ben-Ami, F. and Ebert, Dieter and Regoes, R.. (2010) Pathogen dose infectivity curves as a method to analyze the distribution of host susceptibility : a quantitative assessment of maternal effects after food stress and pathogen exposure. The American naturalist, Vol. 175. pp. 106-115.

Mennerat, A. and Nilsen, F. and Ebert, Dieter and Skorping, A.. (2010) Intensive farming: bevolutionary implications for parasites and pathogens. Evolutionary biology, Vol. 37, H. 2/3. pp. 59-67.

Keeling, P. J. and Corradi, N. and Morrison, H. G. and Haag, K. L. and Ebert, Dieter and Weiss, L. M. and Akiyoshi, D. E. and Tzipori, S.. (2010) The reduced genome of the parasitic Microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism. Genome biology and evolution, Vol. 2. pp. 304-309.

Frost, P. C. and Ebert, Dieter and Larson, J. H. and Marcus, M. A. and Wagner, N. D. and Zalewski, A.. (2010) Transgenerational effects of poor elemental food quality on an aquatic invertebrate. Oecologia, 162 (4). pp. 865-872.

Pulkkinen, K. and Suomalainen, L. -R. and Read, A. F. and Ebert, Dieter and Rintamäki, P. and Valtonen, E. T.. (2010) Intensive fish farming and the evolution of pathogen virulence : the case of columnaris disease in Finland. Proceedings of the Royal Society. Series B, Biological sciences, 2 (1681). pp. 593-600.

Ganz, H. and Ebert, Dieter. (2010) Benefits of host genetic diversity for resistance to infection depend on parasite diversity. Ecology, Vol. 91. pp. 1263-1268.

Altermatt, F. and Pajunen, V. I. and Ebert, Dieter. (2010) Populations in small, ephemeral habitat patches may drive dynamics in a Daphnia magna metapopulation. Ecology, Vol. 91, Nr. 10. pp. 2975-2982.

Routtu, J. and Jansen, B. and Colson, I. and De Meester, L. and Ebert, Dieter. (2010) The first-generation Daphnia magna linkage map. BMC genomics, Vol. 11 , 508.

Gaba, S. and Ebert, Dieter. (2009) Time-shift experiments as a tool to study antagonistic coevolution. Trends in Ecology & Evolution, 24 (4). pp. 226-232.

Altermatt, F. and Pajunen, I. and Ebert, Dieter. (2009) Desiccation of rock pool habitats and its influence onpopulation persistence in a Daphnia metacommunity. PLoS ONE, Vol. 4, H. 3 , e4703.

Bieger, A. and Ebert, Dieter. (2009) Expression of parasite virulence at different host population densities under natural conditions. Oecologia, Vol. 160, H. 2. pp. 247-255.

Altermatt, F. and Baumeyer, A. and Ebert, Dieter. (2009) Experimental evidence for male biased flight-to-light behavior in two moth species. Entomologia Experimentalis et Applicata, 130 (3). pp. 259-265.

Qi, W. and Nong, G. and Preston, J. F. and Ben-Ami, F. and Ebert, Dieter. (2009) Comparative metagenomics of Daphnia symbionts. BMC Genomics, Vol. 10 , 172.

Corradi, N. and Haag, K. L. and Pombert, J. F. and Ebert, Dieter and Keeling, P. J.. (2009) Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions. Genome biology, Vol. 10, H. 10 , R106.

Colson, I. and Du Pasquier, L. and Ebert, Dieter. (2009) Intragenic tandem repeats in Daphnia magna: structure, function and distribution. BMC Research Notes, Vol. 2 , 206, 6 S..

Mouton, L. and Traunecker, E. and McElroy, K. and Du Pasquier, L. and Ebert, Dieter. (2009) Identification of a polymorphic collagen-like protein in the crustacean bacteria Pasteuria ramosa. Research in microbiology, Vol. 160. pp. 792-799.

Ben-Ami, F. and Mouton, L. and Ebert, Dieter. (2008) The effects of multiple infections on the expression and evolution of virulence in a Daphnia-endoparasite system. Evolution, 62 (7). pp. 1700-1711.

Schmidt, L. M. and Mouton, L. and Nong, G. and Ebert, Dieter and Preston, J. F.. (2008) Genetic and immunological comparison of the cladoceran parasite Pasteuria ramosa with the nematode parasite Pasteuria penetrans. Applied and Environmental Microbiology, Vol. 74, H. 1. pp. 259-264.

Rodrigues, J. L. M. and Duffy, M. A. and Tessier, A. J. and Ebert, Dieter and Mouton, L. and Schmidt, T. M.. (2008) Phylogenetic characterization and prevalence of Spirobacillus cienkowskii : a red-pigmented, spiral-shaped bacterial pathogen of the freshwater Cladoceran, Daphnia. Applied and Environmental Microbiology, 74 (5). pp. 1575-1582.

Zbinden, M. and Haag, C. R. and Ebert, Dieter. (2008) Experimental evolution of field populations of Daphnia magna in response to parasite treatment. Journal of Evolutionary Biology, 21 (4). pp. 1068-1078.

Mouton, L. and Ebert, Dieter. (2008) Variable-number-of-tandem-repeats analysis of genetic diversity in Pasteuria ramosa. Current Microbiology, Vol. 56, H. 5. pp. 447-452.

Altermatt, F. and Ebert, Dieter. (2008) Genetic diversity of Daphnia magna populations enhances resistance to parasites. Ecology Letters, 11 (9). pp. 918-928.

Altermatt, F. and Ebert, Dieter. (2008) The influence of pool volume and summer desiccation on the production of the resting and dispersal stage in a Daphnia metapopulation. Oecologia, 157 (3). pp. 441-452.

Roth, O. and Ebert, Dieter and Vizoso, D. B. and Bieger, A. and Lass, S.. (2008) Male-biased sex-ratio distortion caused by Octosporea bayeri, a vertically and horizontally-transmitted parasite of Daphnia magna. International Journal for Parasitology, 38 (8/9). pp. 969-979.

Frost, P. C. and Ebert, Dieter and Smith, V. H.. (2008) Bacterial infection changes the elemental composition of Daphnia magna. The journal of animal ecology, Vol. 77, H. 6. pp. 1265-1272.

Frost, P. C. and Ebert, Dieter and Smith, V. H.. (2008) Responses of a bacterial pathogen to phosphorus limitation of its aquatic invertebrate host. Ecology, 89, Nr. 2. pp. 313-318.

Brites, D. and McTaggart, S. and Morris, K. and Anderson, J. and Thomas, K. and Colson, I. and Fabbro, T. and Little, T. J. and Ebert, Dieter and Du Pasquier, L.. (2008) The Dscam homologue of the crustacean Daphnia is diversified by alternative splicing like in insects. Molecular biology and evolution, 25 (7). pp. 1429-1439.

Altermatt, F. and Pajunen, V. I. and Ebert, Dieter. (2008) Climate change affects colonization dynamics in a metacommunity of three Daphnia species. Global Change Biology, 14 (6). pp. 1209-1220.

Ben-Ami, Frida and Regoes, Roland R. and Ebert, Dieter. (2008) A quantitative test of the relationship between parasite dose and infection probability across different host-parasite combinations. Proceedings of the Royal Society. Series B, Biological Sciences, 275 (1636). pp. 853-859.

Bull, J. J. and Ebert, Dieter. (2008) Invasion thresholds and the evolution of nonequilibrium virulence. Evolutionary Applications, 1 (1). pp. 172-182.

Ebert, Dieter. (2008) Host-parasite coevolution : insights from the Daphnia-parasite model system. Current Opinion in Microbiology, 11 (3). pp. 290-301.

Altermatt, Florian and Ebert, Dieter. (2007) The genotype specific competitive ability does not correlate with infection in natural Daphnia magna populations. PLoS ONE, 2 (12). e1280.

Altermatt, Florian and Hottinger, Jürgen and Ebert, Dieter. (2007) Parasites promote host gene flow in a metapopulation. Evolutionary Ecology, 21 (4). pp. 561-575.

Decaestecker, Ellen and Gaba, Sabrina and Raeymaekers, Joost A. M. and Stoks, Robby and Van Kerckhoven, Liesbeth and Ebert, Dieter and De Meester, Luc. (2007) Host-parasite 'Red Queen' dynamics archived in pond sediment. Nature, 450. pp. 870-873.

Ebert, Dieter and Altermatt, Florian and Lass, Sandra. (2007) A short term benefit for outcrossing in a Daphnia metapopulation in relation to parasitism. Interface : journal of the Royal Society, 4 (16). pp. 777-785.

Haag, C. R. and Ebert, Dieter. (2007) Genotypic selection in Daphnia populations consisting of inbred sibships. Journal of Evolutionary Biology, 20 (3). pp. 881-891.

Mouton, Laurence and Nong, Guang and Preston, James F. and Ebert, Dieter. (2007) Variable-number tandem repeats as molecular markers for biotypes of Pasteuria ramosa in Daphnia spp. Applied and Environmental Microbiology, 73 (11). pp. 3715-3718.

Refardt, D. and Ebert, Dieter. (2007) Inference of parasite local adaptation using two different fitness components. Journal of Evolutionary Biology, 20 (3). pp. 921-929.

Kawecki, T. J. and Ebert, Dieter. (2004) Conceptual issues in local adaptation. Ecology Letters, 7 (12). pp. 1225-1241.

Ebert, Dieter and Haag, C. and Kirkpatrick, M. and Riek, M. and Hottinger, J. W. and Pajunen, V. I.. (2002) A selective advantage to immigrant genes in a Daphnia metapopulation. Science, 295. pp. 485-488.

Ebert, Dieter and Yampolsky, L. Y.. (1992) Family planning in Daphnia: When is clutch size determined? Russian Journal of Aquatic Ecology, 1 (2). pp. 143-147.

Ebert, Dieter and Jacobs, J.. (1991) Differences in life history and aging in two clonal groups of Daphnia cucullata Sars (Crustacea: Cladocera). Hydrobiologia, Vol. 225. pp. 245-253.

Book

Ebert, Dieter. (2005) Ecology, epidemiology, and evolution of parasitism in daphnia. Bethesda.

Preprint

Huessy, Benjamin and Bumann, Dirk and Ebert, Dieter. (2023) Ectopical expression of bacterial collagen-like protein supports its role as adhesin in host-parasite coevolution.

Research Data

Mushegian, Alexandra A. and Arbore, Roberto and Walser, Jean-Claude and Ebert, Dieter. (2019) Data from: Environmental sources of bacteria and genetic variation in behavior influence host-associated microbiota. [Research Data]

Dukic, Marinela and Berner, Daniel and Haag, Christoph R. and Ebert, Dieter. (2019) Data from: How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna. [Research Data]