Browse by Basel Contributors ID

Diez, Lisa and Kapinos, Larisa E. and Lim, Roderick Y. H. and Wegmann, Susanne. (2023) Analysis of Tau/Nucleoporin Interactions by Surface Plasmon Resonance Spectroscopy. In: Protein Aggregation. New York, pp. 95-109.

Kapinos, Larisa E. and Lim, Roderick Y. H.. (2023) Multivalent Interactions with Intrinsically Disordered Proteins Probed by Surface Plasmon Resonance. In: The Nuclear Pore Complex, 2502. New York, pp. 311-328.

Tarvirdipour, Shabnam and Skowicki, Michal and Schoenenberger, Cora-Ann and Kapinos, Larisa E. and Lim, Roderick Y. H. and Benenson, Yaakov and Palivan, Cornelia G.. (2022) A self-assembling peptidic platform to boost the cellular uptake and nuclear delivery of oligonucleotides. Biomaterials science, 10 (15). pp. 4309-4323.

Diez, Lisa and Kapinos, Larisa E. and Hochmair, Janine and Huebschmann, Sabrina and Dominguez-Baquero, Alvaro and Vogt, Amelie and Rankovic, Marija and Zweckstetter, Markus and Lim, Roderick Y. H. and Wegmann, Susanne. (2022) Phosphorylation but Not Oligomerization Drives the Accumulation of Tau with Nucleoporin Nup98. International journal of molecular sciences, 23 (7). p. 3495.

Avsar, Saziye Yorulmaz and Kapinos, Larisa E. and Schoenenberger, Cora-Ann and Schertler, Gebhard F. X. and Muhle, Jonas and Meger, Benoit and Lim, Roderick Y. H. and Ostermaier, Martin K. and Lesca, Elena and Palivan, Cornelia G.. (2020) Immobilization of arrestin-3 on different biosensor platforms for evaluating GPCR binding. Physical Chemistry Chemical Physics, 22 (41). pp. 24086-24096.

Panatala, Radhakrishnan and Barbato, Suncica and Kozai, Toshiya and Luo, Jinghui and Kapinos, Larisa E. and Lim, Roderick Y. H.. (2019) Nuclear Pore Membrane Proteins Self-Assemble into Nanopores. Biochemistry, 58 (6). pp. 484-488.

Eftekharzadeh, Bahareh and Daigle, J. Gavin and Kapinos, Larisa E. and Coyne, Alyssa and Schiantarelli, Julia and Carlomagno, Yari and Cook, Casey and Miller, Sean J. and Dujardin, Simon and Amaral, Ana S. and Grima, Jonathan C. and Bennet, Rachel E. and Tepper, Katharina and DeTure, Michael and Vanderburgh, Charles R. and Corjuc, Bianca T. and Devos, Sarah L. and Gonzalez, Jose Antonio and Chew, Jeannie and Vidensky, Svetlana and Gage, Fred H. and Mertens, Jerome and Troncoso, Juan and Mandelkow, Eckhard and Salvatella, Xavier and Lim, Roderick Y. H. and Petrucelli, Leonard and Wegmann, Susanne and Rothstein, Jeffrey D. and Hyman, Bradley T.. (2018) Tau Protein Disrupts Nucleocytoplasmic Transport in Alzheimer's Disease. Neuron, 99 (5). pp. 925-940.e7.

Malekian, Bita and Schoch, Rafael L. and Robson, Timothy and Ferrand-Drake del Castillo, Gustav and Xiong, Kunli and Emilsson, Gustav and Kapinos, Larisa E. and Lim, Roderick Y. H. and Dahlin, Andreas B.. (2018) Detecting Selective Protein Binding inside Plasmonic Nanopores: Towards a Mimic of the Nuclear Pore Complex. Frontiers in Chemistry, 6. p. 637.

Sakiyama, Yusuke and Mazur, Adam and Kapinos, Larisa E. and Lim, Roderick Y. H.. (2016) Spatiotemporal dynamics of the nuclear pore complex transport barrier resolved by high-speed atomic force microscopy. Nature Nanotechnology (11). pp. 719-723.

Vovk, Andrei and Gu, Chad and Opferman, Michael G. and Kapinos, Larisa E. and Lim, Roderick Y. H. and Coalson, Rob D. and Jasnow, David and Zilman, Anton. (2016) Simple biophysics underpins collective conformations of the intrinsically disordered proteins of the Nuclear Pore Complex. eLife, 5. e10785.

Wagner, Raphael S. and Kapinos, Larisa E. and Marshall, Neil J. and Stewart, Murray and Lim, Roderick Y. H.. (2015) Promiscuous Binding of Karyopherinβ1 Modulates FG Nucleoporin Barrier Function and Expedites NTF2 Transport Kinetics. Biophysical journal, 108 (4). pp. 918-927.

Kapinos, Larisa E. and Schoch, Rafael L. and Wagner, Raphael S. and Schleicher, Kai D. and Lim, Roderick Y. H.. (2014) Karyopherin-centric control of nuclear pores based on molecular occupancy and kinetic analysis of multivalent binding with FG nucleoporins. Biophysical journal, Vol. 106, H. 8. pp. 1751-1762.

Schleicher, Kai D. and Dettmer, Simon D. and Kapinos, Larisa E. and Pagliara, Stefano and Keyser, Ulrich F. and Jeney, Sylvia and Lim, Roderick Y. H.. (2014) Selective transport control on molecular velcro made from intrinsically disordered proteins. Nature nanotechnology, Vol. 9 H. 7 , S. 525–530.

Yang, Liu and Munck, Martina and Swaminathan, Karthic and Kapinos, Larisa E. and Noegel, Angelika A. and Neumann, Sascha. (2013) Mutations in LMNA Modulate the Lamin A - Nesprin-2 Interaction and Cause LINC Complex Alterations. PLoS ONE, Vol. 8, H. 8 , e71850.

Schoch, Rafael L. and Kapinos, Larisa E. and Lim, Roderick Y. H.. (2012) Nuclear transport receptor binding avidity triggers a self-healing collapse transition in FG-nucleoporin molecular brushes. Proceedings of the National Academy of Sciences of the United States of America, 109 (42). pp. 16911-16916.

Kowalczyk, S. W. and Kapinos, L. and Blosser, T. R. and Magalhaes, T. and van Nies, P. and Lim, R. Y. H. and Dekker, C.. (2011) Single-molecule transport across an individual biomimetic nuclear pore complex. Nature Nanotechnology, Vol. 6, H. 7. pp. 433-438.

Kapinos, L. E. and Burkhard, P. and Herrmann, H. and Aebi, U. and Strelkov, S. V.. (2011) Simultaneous formation of right- and left-handed anti-parallel coiled-coil interfaces by a coil2 fragment of human lamin A. Journal of molecular biology, Vol. 408, H. 1. pp. 135-146.

Kapinos, L. E. and Operschall, B. P. and Larsen, E. and Sigel, H.. (2011) Understanding the Acid-Base Properties of Adenosine : the Intrinsic Basicities of N1, N3 and N7. Chemistry: a European journal, Vol. 17, H. 29. pp. 8156-8164.

Kapinos, L. E. and Schumacher, J. and Mucke, N. and Machaidze, G. and Burkhard, P. and Aebi, U. and Strelkov, S. V. and Herrmann, H.. (2010) Characterization of the head-to-tail overlap complexes formed by human lamin A, B1 and B2 "half-minilamin" dimers. Journal of molecular biology, Vol. 396, H. 3. pp. 719-731.

Guthe, S. and Kapinos, L. and Moglich, A. and Meier, S. and Grzesiek, S. and Kiefhaber, T.. (2004) Very fast folding and association of a trimerization domain from bacteriophage T4 fibritin. Journal of molecular biology, Vol. 337, H. 4. pp. 905-915.

Gómez-Coca, R. B. and Kapinos, L. E. and Holý, A. and Vilaplana, Rosario A. and González-Vílchez, Francisco and Sigel, Helmut. (2004) Quantification of isomeric equilibria formed by metal ion complexes of 8-[2-(phosphonomethoxy)ethyl]-8-azaadenine (8,8aPMEA) and 9-[2-(phosphonomethoxy)ethyl]-8-azaadenine (9,8aPMEA) : derivatives of the antiviral nucleotide analogue 9-[2-(phosphonomethoxy)ethyl]adenine (PMEA). Journal of Biological Inorganic Chemistry, 9 (8). pp. 961-972.

Griesser, Rolf and Kampf, Gunnar and Kapinos, Larisa E. and Komeda, Seiji and Lippert, Bernhard and Reedijk, Jan and Sigel, Helmut. (2003) Intrinsic acid-base properties of purine derivatives in aqueous solution and comparison of the acidifying effects of platinum(II) coordinated to N1 or N7 : acidifying effects are reciprocal and the proton "outruns" divalent metal ions. Inorganic chemistry, Vol. 42, H. 1. pp. 32-41.

Kapinos, L. E. and Sigel, H.. (2002) Acid-base and metal ion binding properties of pyridine-type ligands in aqueous solution.: Effect of ortho substituents and interrelation between complex stability and ligand basicity. Inorganica chimica acta, Vol. 337. pp. 131-142.

Kampf, G. and Kapinos, L. E. and Griesser, R. and Lippert, B. and Sigel, H.. (2002) Comparison of the acid-base properties of purine derivatives in aqueous solution : determination of intrinsic proton affinities of various basic sites. Journal of the Chemical Society. Perkin transactions 2, 2002, H. 7. pp. 1320-1327.

Kampf, G. and Lüth, M. S. and Kapinos, L. E. and Müller, J. and Holý, A. and Lippert, B. and Sigel, H.. (2001) Formation of ternary complexes by coordination of (diethylenetriamine)-platinum(II) to N1 or N7 of the adenine moiety of the antiviral nucleotide analogue 9. Chemistry, Vol. 7, H. 9. pp. 1899-1908.

Kapinos, L. E. and Holý, A. and Günter, J. and Sigel, H.. (2001) Metal ion-binding properties of 1-methyl-4-aminobenzimidazole (=9-methyl-1,3-dideazaadenine) and 1,4-dimethylbenzimidazole (=6,9-dimethyl-1,3-dideazapurine) quantification of the steric effect of the 6-amino group on metal ion binding at the N7 site of the adenine residue. Inorganic chemistry, Vol. 40, H. 11. pp. 2500-2508.

Gómez-Coca, R. B. and Kapinos, L. E. and Holý, A. and Vilaplana, R. A. and González-Vílchez, F. and Sigel, H.. (2001) Intramolecular stacking interactions in ternary copper(II) complexes formed with 2,2'-bipyridine or 1,10-phenanthroline and 9-(4-phosphonobutyl)adenine (dPMEA), the carba relative of the antiviral nucleotide analogue 9. Journal of inorganic biochemistry, Vol. 84, H. 1-2. pp. 39-46.

Sigel, H. and Kapinos, L. E.. (2000) Quantification of isomeric equilibria for metal ion complexes formed in solution by phosphate or phosphonate ligands with a weakly coordinating second site. Coordination chemistry reviews, Vol. 200-202. pp. 563-594.

Sigel, H. and Saha, A. and Saha, N. and Carloni, P. and Kapinos, L. E. and Griesser, R.. (2000) Evaluation of intramolecular equilibria in complexes formed between substituted imidazole ligands and nickel (II), copper (II) or zinc (II). Journal of inorganic biochemistry, Vol. 78, H. 2. pp. 129-137.

Gómez-Coca, R. B. and Kapinos, L. E. and Holý, A. and Vilaplana, R. A. and González-Vílchez, F. and Sigel, H.. (2000) Ternary Copper(II) Complexes in Solution Formed With 8-Aza Derivatives of the Antiviral Nucleotide Analogue 9-[2-(Phosphonomethoxy)Ethyl]Adenine (PMEA). Metal-based drugs, Vol. 7, H. 6. pp. 313-324.

Gómez-Coca, R. B. and Kapinos, L. E. and Hol`y, A. and Vilaplana, R. A. and González-V`ilchez, F. and Sigel, H.. (2000) Metal ion-binding properties of 9-(4-phosphonobutyl) adenine (dPMEA), a sister compound of the antiviral nucleotide analogue 9-[2-(phosphonomethoxy) ethyl] adenine (PMEA), and quantification of the equilibria involving four Cu (PMEA) isomers. Journal of the Chemical Society. Dalton transactions, 2000, H. 13. pp. 2077-2084.

Lüth, M. S. and Kapinos, L. E. and Song, B. and Lippert, B. and Sigel, H.. (1999) Extent of intramolecular stacking interactions in the mixed-ligand complexes formed in aqueous solution by copper (II), 2, 2′-bipyridine or 1, 10-phenanthroline and 2′-deoxyguanosine 5′-monophosphateâ€. Journal of the Chemical Society. Dalton transactions, 1999, H. 3. pp. 357-366.

Sigel, H. and Song, B. and Blindauer, C. A. and Kapinos, L. E. and Gregávn, F. and Prónayová, N.. (1999) Why is the antiviral nucleotide analogue 9-[2-(phosphonomethoxy)ethyl]adenine in its diphosphorylated form (PMEApp4–) initially a better substrate for polymerases than (2′-deoxy)adenosine 5′-triphosphate (dATP4–/ATP4–)? Considerations on the mechanism of nucleic acid polymerases. Chemical Communications, 35 (8). pp. 743-744.

Kapinos, L. E. and Song, B. and Sigel, H.. (1999) Acid-Base and Metal-Ion-Coordinating Properties of Benzimidazole and Derivatives (= 1, 3-Dideazapurines) in Aqueous Solution : Interrelation between Complex Stability and Ligand Basicity. Chemistry: a European journal, Vol. 5, H. 6. pp. 1794-1802.

Kapinos, L. E. and Sigel, H.. (1999) On the Metal-Ion-Coordinating Properties of the Benzimidazolate Residue in Aqueous Solution-Extent of Acidification of Benzimidazole-(N3) H Sites by (N1)-Coordinated Divalent Metal Ions. European Journal of Inorganic Chemistry, 1999, H. 10. pp. 1781-1786.

Kapinos, L. E. and Song, B. I. N. and Sigel, H.. (1998) Metal ion-binding properties in aqueous solution of the nucleoside analogue, 5, 6-dichloro-1-(beta-D-ribofuranosyl) benzimidazole (DRB). Zeitschrift für Naturforschung. Sect. B, Chemical sciences, Vol. 53, H. 8. pp. 903-908.

Kapinos, L. E. and Song, B. and Sigel, H.. (1998) Metal ion-coordinating properties of imidazole and derivatives in aqueous solution : interrelation between complex stability and ligand basicity. Inorganica chimica acta, Vol. 280, H. 1. pp. 50-56.

Kornilova, S. and Hackl, E. and Kapinos Schneider, Larisa E. E and Andrushchenko, V. and Blagoi, Y.. (1998) DNA interaction with biologically active metal ions. Cooperativity of metal ion binding and compacting of DNA. Acta Biochimica Polonica, 45 (1). pp. 107-117.

Kornilova, S. V. and Yasem, P. and Grigoriev, D. N. and Kapinos, L. E. and Totova, Y. and Blagoi, Y. P. and Galkin, V. L.. (1998) Kalorimetricheskoe izuchenie perekhoda spiral'-klubok v DNK pri vzaimodeistvii s ionami Cu2+. Biofizika, 43 (1). pp. 37-42.

Andrushchenko, V. V. and Kornilova, S. V. and Kapinos, L. E. and Hackl, E. V. and Galkin, V. L. and Grigoriev, D. N. and Blagoi, Y. P.. (1997) IR-spectroscopic studies of divalent metal ion effects on DNA hydration. Journal of molecular structure, Vol. 408-409. pp. 225-228.

Kornilova, S. V. and Iasem, P. and Grigor'ev, D. N. and Kapinos, L. E. and Totova, Ia and Blagoĭ, Iu P.. (1997) Kalorimetricheskoe issledovanie vliianiia ionov Ca2+ i Mn2+ na perekhodspiral'-klubok v DNK. Biofizika, 42 (3). pp. 599-606.

Kornilova, S. V. and Miskovsky, P. and Tomkova, A. and Kapinos, L. E. and Hackl, E. V. and Andrushchenko, V. V. and Grigoriev, D. N. and Blagoi, Y. P.. (1997) Vibrational spectroscopic studies of the divalent metal ion effect on DNA structural transitions. Journal of Molecular Structure , 408. pp. 219-223.

Hackl, E. V. and Kornilova, S. V. and Kapinos, L. E. and Andrushchenko, V. V. and Galkin, V. L. and Grigoriev, D. N. and Blagoi, Y. P.. (1997) Study of Ca2+, Mn2+and Cu2+ binding to DNA in solution by means of IR spectroscopy. Journal of Molecular Structure , 408. pp. 229-232.

Kornilova, S. V. and Kapinos Schneider, Larisa E. E and Blagoĭ, Iu. P.. (1995) Izuchenie vzaimodeĭstviia DNK s ionami kal'tsiia metodom kolebatel'noĭ spektroskopii. Molekulyarnaya Biologiya, 29 (3). pp. 574-584.

Blagoĭ, Iu P. and Kornilova, S. V. and Leont'ev, V. S. and Sorokin, V. A. and Gladchenko, G. O. and Valeev, V. A. and Grigor'ev, D. N. and Kapinos, L. E. and Bondarenko, V. N. and Kolod, V. Ia. (1994) Strukturnye i fiziko-khimicheskie kharakteristiki DNK iz tkaneǐ zhivotnykh, podvergavshikhsia dlitel'nomu khronicheskomu oblucheniiu v zone chernobylia. Biofizika, 39 (4). pp. 637-645.

Kornilova, S. V. and Kapinos, L. E. and Tomkova, A. and Mishkovskiĭ, P. and Blagoĭ, Iu. P. and Bol'bukh, T. V.. (1994) Izuchenie metodami IK- i Ramanovskoǐ spektroskopii vzaimodeǐstviia DNK s ionami medi. Biofizika, 39 (3). pp. 423-436.

Kornilova, S. A. and Kapinos, L. E. and Blagoĭ, Iu. P.. (1993) Studies on DNA interaction with manganese ions by IR spectroscopy. Molekulyarnaya Biologiya, 27 (6). pp. 1276-1286.