Browse by Basel Contributors ID

2023

Rahaman, Sayanur and Faravelli, Simone and Voegeli, Sylvia and Becskei, Attila. (2023) Polysome propensity and tunable thresholds in coding sequence length enable differential mRNA stability. Science Advances, 9 (39). eadh9545-eadh9545.

2022

Jaquet, Vincent and Wallerich, Sandrine and Voegeli, Sylvia and Túrós, Demeter and Viloria, Eduardo C. and Becskei, Attila. (2022) Determinants of the temperature adaptation of mRNA degradation. Nucleic Acids Research, 50 (2). pp. 1092-1110.

Becskei, Attila and Rahaman, Sayanur. (2022) The life and death of RNA across temperatures. Computational and structural biotechnology journal, 20. pp. 4325-4336.

2021

Iakovlev, Mikhail and Faravelli, Simone and Becskei, Attila. (2021) Gene Families With Stochastic Exclusive Gene Choice Underlie Cell Adhesion in Mammalian Cells. Frontiers in Cell and Developmental Biology, 9. p. 642212.

2020

Becskei, Attila. (2020) Tuning up Transcription Factors for Therapy. Molecules, 25 (8). p. 1902.

2019

Wada, Takeo and Wallerich, Sandrine and Becskei, Attila. (2019) Synthetic transcription factors switch from local to long-range control during cell differentiation. ACS Synthetic Biology, 8 (2). pp. 223-231.

Baudrimont, Antoine and Jaquet, Vincent and Wallerich, Sandrine and Voegeli, Sylvia and Becskei, Attila. (2019) Contribution of RNA Degradation to Intrinsic and Extrinsic Noise in Gene Expression. Cell reports, 26 (13). pp. 3752-3761.e5.

2018

Wada, Takeo and Wallerich, Sandrine and Becskei, Attila. (2018) Stochastic Gene Choice during Cellular Differentiation. Cell reports, 24 (13). pp. 3503-3512.

2017

Maleki, Farzaneh and Becskei, Attila. (2017) An open-loop approach to calculate noise-induced transitions. Journal of Theoretical Biology. pp. 1-13.

Jaquet, Vincent and Hsu, Chieh and Becskei, Attila. (2017) Measurement of bistability in a multidimensional parameter space. Integrative Biology, 9 (2). pp. 167-177.

Gencoglu, Mumun and Schmidt, Alexander and Becskei, Attila. (2017) Measurement of in vivo protein binding affinities in a signaling network with mass spectrometry. ACS Synthetic Biology, 6 (7). pp. 1305-1314.

Baudrimont, Antoine and Voegeli, Sylvia and Viloria, Eduardo Calero and Stritt, Fabian and Lenon, Marine and Wada, Takeo and Jaquet, Vincent and Becskei, Attila. (2017) Multiplexed gene control reveals rapid mRNA turnover. Science Advances, 3 (7). e1700006.

Wada, Takeo and Becskei, Attila. (2017) Impact of Methods on the Measurement of mRNA Turnover. International Journal of Molecular Sciences, 18 (12). p. 12.

2016

Hsu, Chieh and Jaquet, Vincent and Maleki, Farzaneh and Becskei, Attila. (2016) Contribution of bistability and noise to cell fate transitions determined by feedback opening. Journal of Molecular Biology, 428 (20). pp. 4115-4128.

Hsu, Chieh and Jaquet, Vincent and Gencoglu, Mumun and Becskei, Attila. (2016) Protein Dimerization Generates Bistability in Positive Feedback Loops. Cell Reports , 16 (5). pp. 1204-1210.

2015

Májer, Imre and Hajihosseini, Amirhossein and Becskei, Attila. (2015) Identification of optimal parameter combinations for the emergence of bistability. Physical biology, 12 (6). 066011.

Baudrimont, Antoine and Becskei, Attila. (2015) Gene regulation: Expression feels two pulses. Nature, 527 (7576). pp. 46-47.

2014

Bonde, Marie Mi and Voegeli, Sylvia and Baudrimont, Antoine and Séraphin, Bertrand and Becskei, Attila. (2014) Quantification of pre-mRNA escape rate and synergy in splicing. Nucleic acids research, Vol. 42, H. 20. pp. 12847-12860.

2013

Stölting, Meline Nogueira Lucena and Ferrari, Stefano and Handschin, Christoph and Becskei, Attila and Provenzano, Maurizio and Sulser, Tullio and Eberli, Daniel. (2013) Myoblasts inhibit prostate cancer growth by paracrine secretion of tumor necrosis factor-α. Journal of Urology, 189 (5). pp. 1952-1959.

2012

Hsu, Chieh and Scherrer, Simone and Buetti-Dinh, Antoine and Ratna, Prasuna and Pizzolato, Julia and Jaquet, Vincent and Becskei, Attila. (2012) Stochastic signalling rewires the interaction map of a multiple feedback network during yeast evolution. Nature communications, Vol. 3 , 682.

2011

Becskei, Attila and Scherrer, Simone and Kelemen, Janos Z. and Murray, Ann Ehrenhofer. (2011) Modeling of chromosomal epigenetic silencing processes. Transcription, 2 (4). pp. 173-178.

Ratna, Prasuna and Becskei, Attila. (2011) Construction of cis-regulatory input functions of yeast promoters. In: Yeast Genetic Networks. Basel, pp. 45-61.

2010

Sun, Li and Becskei, Attila. (2010) Systems biology: The cost of feedback control. Nature, 467 (7312). pp. 163-164.

Kelemen, János Z. and Ratna, Prasuna and Scherrer, Simone and Becskei, Attila. (2010) Spatial epigenetic control of mono- and bistable gene expression. PLoS Biology, 8 (3). e1000332.

2009

Byun, Reine and Becskei, Attila. (2009) Biology inspires engineering. Genome Biology, 10 (11). p. 317.

Buetti-Dinh, Antoine and Ungricht, Rosemarie and Kelemen, János Z. and Shetty, Chetak and Ratna, Prasuna and Becskei, Attila. (2009) Control and signal processing by transcriptional interference. Molecular Systems Biology, 5. p. 300.

Becskei, Attila. (2009) Linearization through distortion: a new facet of negative feedback in signalling. Molecular Systems Biology, 5. p. 255.

Ratna, Prasuna and Scherrer, Simone and Fleischli, Christoph and Becskei, Attila. (2009) Synergy of repression and silencing gradients along the chromosome. Journal of Molecular Biology, 387 (4). pp. 826-839.

2007

Becskei, Attila and Grusby, Michael J.. (2007) Contribution of IL-12R mediated feedback loop to Th1 cell differentiation. FEBS Letters, 581 (27). pp. 5199-5206.

2005

Ozbudak, Ertugrul M. and Becskei, Attila and van Oudenaarden, Alexander. (2005) A system of counteracting feedback loops regulates Cdc42p activity during spontaneous cell polarization. Developmental Cell, 9 (4). pp. 565-571.

Becskei, Attila and Kaufmann, Benjamin B. and van Oudenaarden, Alexander. (2005) Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nature Genetics, 37 (9). pp. 937-944.

Acar, Murat and Becskei, Attila and van Oudenaarden, Alexander. (2005) Enhancement of cellular memory by reducing stochastic transitions. Nature, 435 (7039). pp. 228-232.

Becskei, Attila and Mattaj, Iain W.. (2005) Quantitative models of nuclear transport. Current Opinion in Cell Biology, 17 (1). pp. 27-34.

2004

Becskei, Attila and Boselli, Monica G. and van Oudenaarden, Alexander. (2004) Amplitude control of cell-cycle waves by nuclear import. Nature Cell Biology , 6 (5). pp. 451-457.

2003

Becskei, Attila and Mattaj, Iain W.. (2003) The strategy for coupling the RanGTP gradient to nuclear protein export. Proceedings of the National Academy of Sciences of the United States of America, 100 (4). pp. 1717-1722.

2002

Louis, Matthieu and Becskei, Attila. (2002) Binary and graded responses in gene networks. Science Signaling, 2002 (143). e33.

2001

Becskei, A. and Séraphin, B. and Serrano, L.. (2001) Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. The EMBO Journal, 20 (10). pp. 2528-2535.

2000

Becskei, A. and Serrano, L.. (2000) Engineering stability in gene networks by autoregulation. Nature, 405 (6786). pp. 590-593.

1998

Jancsó, G. and Domoki, F. and Sántha, P. and Varga, J. and Fischer, J. and Orosz, K. and Penke, B. and Becskei, Attila and Dux, M. and Tóth, L.. (1998) Beta-amyloid (1-42) peptide impairs blood-brain barrier function after intracarotid infusion in rats. Neuroscience Letters, 253 (2). pp. 139-141.