Browse by Basel Contributors ID
2023Charlwood, J. D. and Smith, T. A. and Kampango, A. and Tomas, E. V. E. and Chitnis, N.. (2023) Time series analysis of survival and oviposition cycle duration of Anopheles funestus (Giles) in Mozambique. PeerJ, 11. e15230. 2022Yang, G. J. and Shang, L. Y. and Zhou, X. N. and Lee, T. E. and Bi, B. and White, M. and Smith, T. A. and Penny, M. A.. (2022) The empirical support for the radical cure strategy for eliminating Plasmodium vivax in China. BMC Med, 20. p. 17. 2021Multerer, L. and Vanobberghen, F. and Glass, T. R. and Hiscox, A. and Lindsay, S. W. and Takken, W. and Tiono, A. and Smith, T.. (2021) Estimating intervention effectiveness in trials of malaria interventions with contamination. Malar J, 20. p. 413. Multerer, L. and Glass, T. R. and Vanobberghen, F. and Smith, T.. (2021) Analysis of contamination in cluster randomized trials of malaria interventions. Trials, 22. p. 613. Reiker, T. and Golumbeanu, M. and Shattock, A. and Burgert, L. and Smith, T. A. and Filippi, S. and Cameron, E. and Penny, M. A.. (2021) Emulator-based Bayesian optimization for efficient multi-objective calibration of an individual-based model of malaria. Nat Commun, 12. p. 7212. Runge, M. and Mapua, S. and Nambunga, I. and Smith, T. A. and Chitnis, N. and Okumu, F. and Pothin, E.. (2021) Evaluation of different deployment strategies for larviciding to control malaria: a simulation study. Malar J, 20. p. 324. Smith, T. and Denz, A. and Ombok, M. and Bayoh, N. and Koenker, H. and Chitnis, N. and Briët, O. and Yukich, J. and Gimnig, J. E.. (2021) Incidence and consequences of damage to insecticide-treated mosquito nets in Kenya. Malar J, 20. p. 476. Galactionova, K. and Smith, T. A. and Penny, M. A.. (2021) Insights from modelling malaria vaccines for policy decisions: the focus on RTS,S. Malar J, 20. p. 439. Runge, M. and Mapua, S. and Nambunga, I. and Smith, T. A. and Chitnis, N. and Okumu, F. and Pothin, E.. (2021) Correction to: Evaluation of different deployment strategies for larviciding to control malaria: a simulation study. Malar J, 20. p. 350. 2020Gruenberg, Maria and Hofmann, Natalie E. and Nate, Elma and Karl, Stephan and Robinson, Leanne J. and Lanke, Kjerstin and Smith, Thomas A. and Bousema, Teun and Felger, Ingrid. (2020) qRT-PCR versus IFA-based quantification of male and female gametocytes in low-density Plasmodium falciparum infections and their relevance for transmission. Journal of infectious diseases, 221 (4). pp. 598-607. Plucinski, Mateusz M. and Candrinho, Baltazar and Dimene, Mercia and Smith, Tom and Thwing, Julie and Colborn, James and Rogier, Eric and Zulliger, Rose. (2020) Estimation of malaria-attributable fever in malaria test-positive febrile outpatients in three provinces of Mozambique, 2018. American journal of tropical medicine and hygiene, 102 (1). pp. 151-155. Runge, Manuela and Snow, Robert W. and Molteni, Fabrizio and Thawer, Sumaiyya and Mohamed, Ally and Mandike, Renata and Giorgi, Emanuele and Macharia, Peter M. and Smith, Thomas A. and Lengeler, Christian and Pothin, Emilie. (2020) Simulating the council-specific impact of anti-malaria interventions: a tool to support malaria strategic planning in Tanzania. PLoS ONE, 15 (2). e0228469. Eldh, Martina and Hammar, Ulf and Arnot, David and Beck, Hans-Peter and Garcia, André and Liljander, Anne and Mercereau-Puijalon, Odile and Migot-Nabias, Florence and Mueller, Ivo and Ntoumi, Francine and Ross, Amanda and Smith, Thomas and Sondén, Klara and Vafa Homann, Manijeh and Yman, Victor and Felger, Ingrid and Färnert, Anna. (2020) Multiplicity of asymptomatic Plasmodium falciparum infections and risk of clinical malaria: a systematic review and pooled analysis of individual participant data. Journal of infectious diseases, 221 (5). pp. 775-785. Penny, Melissa A. and Camponovo, Flavia and Chitnis, Nakul and Smith, Thomas A. and Tanner, Marcel. (2020) Future use-cases of vaccines in malaria control and elimination. Parasite epidemiology and control, 10. e00145. Briet, Olivier and Koenker, Hannah and Norris, Laura and Wiegand, Ryan and Vanden Eng, Jodi and Thackeray, Alex and Williamson, John and Gimnig, John E. and Fortes, Filomeno and Akogbeto, Martin and Yadouleton, Anges W. and Ombok, Maurice and Bayoh, M. Nabie and Mzilahowa, Themba and Abílio, Ana Paula and Mabunda, Samuel and Cuamba, Nelson and Diouf, Elhadji and Konaté, Lassana and Hamainza, Busiku and Katebe-Sakala, Cecilia and Ponce de León, Gabriel and Asamoa, Kwame and Wolkon, Adam and Smith, Stephen C. and Swamidoss, Isabel and Green, Mike and Gueye, Salam and Mihigo, Jules and Morgan, Juliette and Dotson, Ellen and Craig, Allen S. and Tan, Kathrine R. and Wirtz, Robert A. and Smith, Tom. (2020) Attrition, physical integrity and insecticidal activity of long-lasting insecticidal nets in sub-Saharan Africa and modelling of their impact on vectorial capacity. Malaria journal, 19. p. 310. Galactionova, Katya and Velarde, Mar and Silumbe, Kafula and Miller, John and McDonnell, Anthony and Aguas, Ricardo and Smith, Thomas A. and Penny, Melissa A.. (2020) Costing malaria interventions from pilots to elimination programmes. Malaria journal, 19. p. 332. Yang, G. J. and Liu, Y. and Shang, L. Y. and Zhang, H. W. and Zhou, X. N. and Penny, M. A. and Smith, T. A.. (2020) From Plasmodium vivax outbreak to elimination: lessons learnt from a retrospective analysis of data from Guantang. Malar J, 19. p. 427. 2019Plucinski, Mateusz M. and Rogier, Eric and Dimbu, Pedro Rafael and Fortes, Filomeno and Halsey, Eric S. and Aidoo, Michael and Smith, Tom. (2019) Performance of antigen concentration thresholds for attributing fever to malaria among outpatients in Angola. Journal of clinical microbiology, 57 (3). e01901-18. Multerer, Lea and Smith, Thomas and Chitnis, Nakul. (2019) Modeling the impact of sterile males on an Aedes aegypti population with optimal control. Mathematical biosciences : an international journal, 311. pp. 91-102. Briët, Olivier J. T. and Impoinvil, Daniel E. and Chitnis, Nakul and Pothin, Emilie and Lemoine, Jean Frantz and Frederic, Joseph and Smith, Thomas A.. (2019) Models of effectiveness of interventions against malaria transmitted by Anopheles albimanus. Malaria journal, 18. p. 263. Chitnis, Nakul and Pemberton-Ross, Peter and Yukich, Josh and Hamainza, Busiku and Miller, John and Reiker, Theresa and Eisele, Thomas P. and Smith, Thomas A.. (2019) Theory of reactive interventions in the elimination and control of malaria. Malaria journal, 18. p. 266. Reiker, Theresa and Chitnis, Nakul and Smith, Thomas. (2019) Modelling reactive case detection strategies for interrupting transmission of Plasmodium falciparum malaria. Malaria journal, 18. p. 259. Smith, T. A. and Pemberton-Ross , P. and Penny, M. A. and Chitnis, N.. (2019) Resurgence of malaria infection after mass treatment: a simulation study. Malaria journal, 18. p. 409. Saddler, A. and Kreppel, K. S. and Chitnis, N. and Smith, T. A. and Denz, A. and Moore, J. D. and Tambwe, M. M. and Moore, S. J.. (2019) The development and evaluation of a self-marking unit to estimate malaria vector survival and dispersal distance. Malaria journal, 18. p. 441. 2018Amek, Nyaguara O. and Van Eijk, Annemieke and Lindblade, Kim A. and Hamel, Mary and Bayoh, Nabie and Gimnig, John and Laserson, Kayla F. and Slutsker, Laurence and Smith, Thomas and Vounatsou, Penelope. (2018) Infant and child mortality in relation to malaria transmission in KEMRI/CDC HDSS, Western Kenya: validation of verbal autopsy. Malaria journal, 17. p. 37. White, Michael T. and Karl, Stephan and Koepfli, Cristian and Longley, Rhea J. and Hofmann, Natalie E. and Wampfler, Rahel and Felger, Ingrid and Smith, Tom and Nguitragool, Wang and Sattabongkot, Jetsumon and Robinson, Leanne and Ghani, Azra and Mueller, Ivo. (2018) Plasmodium vivax and Plasmodium falciparum infection dynamics: re-infections, recrudescences and relapses. Malaria journal, 17. p. 170. Chitnis, Nakul and Schapira, Allan and Schindler, Christian and Penny, Melissa A. and Smith, Thomas A.. (2018) Mathematical analysis to prioritise strategies for malaria elimination. Journal of theoretical biology, 455. pp. 118-130. Tiono, Alfred B. and Ouédraogo, Alphonse and Ouattara, Daouda and Bougouma, Edith C. and Coulibaly, Sam and Diarra, Amidou and Faragher, Brian and Guelbeogo, Moussa W. and Grisales, Nelson and Ouédraogo, Issa N. and Ouédraogo, Zininwindé Amidou and Pinder, Margaret and Sanon, Souleymane and Smith, Tom and Vanobberghen, Fiona and Sagnon, N'Fale and Ranson, Hilary and Lindsay, Steve W.. (2018) Efficacy of Olyset Duo, a bednet containing pyriproxyfen and permethrin, versus a permethrin-only net against clinical malaria in an area with highly pyrethroid-resistant vectors in rural Burkina Faso : a cluster-randomised controlled trial. Lancet, 392 (10147). pp. 569-580. Ali, Ali Mohamed and Penny, Melissa A. and Smith, Thomas A. and Workman, Lesley and Sasi, Philip and Adjei, George O. and Aweeka, Francesca and Kiechel, Jean-René and Jullien, Vincent and Rijken, Marcus J. and McGready, Rose and Mwesigwa, Julia and Kristensen, Kim and Stepniewska, Kasia and Tarning, Joel and Barnes, Karen I. and Denti, Paolo and Wwarn Amodiaquine PK Study Group, . (2018) Population pharmacokinetics of the antimalarial amodiaquine: a pooled analysis to optimize dosing. Antimicrobial agents and chemotherapy, 62 (10). e02193-17. Hofmann, Natalie E. and Gruenberg, Maria and Nate, Elma and Ura, Alice and Rodriguez-Rodriguez, Daniela and Salib, Mary and Mueller, Ivo and Smith, Thomas A. and Laman, Moses and Robinson, Leanne J. and Felger, Ingrid. (2018) Assessment of ultra-sensitive malaria diagnosis versus standard molecular diagnostics for malaria elimination : an in-depth molecular community cross-sectional study. The Lancet infectious diseases, 18 (10). pp. 1108-1116. 2017Camponovo, Flavia and Bever, Caitlin A. and Galactionova, Katya and Smith, Thomas and Penny, Melissa A.. (2017) Incidence and admission rates for severe malaria and their impact on mortality in Africa. Malaria journal, 16. p. 1. Galactionova, Katya and Tediosi, Fabrizio and Camponovo, Flavia and Smith, Thomas A. and Gething, Peter W. and Penny, Melissa A.. (2017) Country specific predictions of the cost-effectiveness of malaria vaccine RTS,S/AS01 in endemic Africa. Vaccine, 35 (1). pp. 53-60. Hamilton, Matthew and Mahiane, Guy and Werst, Elric and Sanders, Rachel and Briët, Olivier and Smith, Thomas and Cibulskis, Richard and Cameron, Ewan and Bhatt, Samir and Weiss, Daniel J. and Gething, Peter W. and Pretorius, Carel and Korenromp, Eline L.. (2017) Spectrum-Malaria : a user-friendly projection tool for health impact assessment and strategic planning by malaria control programmes in sub-Saharan Africa. Malaria journal, 16. p. 68. Smith, T. and Chitnis, N. and Penny, M.. (2017) Predictive malaria epidemiology : modeling malaria infection dynamics and impact of control interventions. In: Encyclopedia of malaria. New York, pp. 1-10. Smith, Thomas A. and Chitnis, Nakul and Penny, Melissa and Tanner, Marcel. (2017) Malaria modeling in the era of eradication. Cold Spring Harbor perspectives in medicine, 7 (4). a025460. Brady, Oliver J. and Slater, Hannah C. and Pemberton-Ross, Peter James and Wenger, Edward and Maude, Richard J. and Ghani, Azra C. and Penny, Melissa A. and Gerardin, Jaline and White, Lisa J. and Chitnis, Nakul and Aguas, Ricardo and Hay, Simon I. and Smith, David L. and Stuckey, Erin M. and Okiro, Emelda A and Smith, Thomas A. and Okell, Lucy C.. (2017) Role of mass drug administration in elimination of Plasmodium falciparum malaria: a consensus modelling study. Lancet Glob Health, 5 (7). e680-e687. Brady, O. J. and Slater, H. C. and Pemberton-Ross, P. and Wenger, E. and Maude, R. J. and Ghani, A. C. and Penny, M. A. and Gerardin, J. and White, L. J. and Chitnis, N. and Aguas, R. and Hay, S. I. and Smith, D. L. and Stuckey, E. M. and Smith, T. A. and Okell, L. C.. (2017) Model citizen – Authors' reply. Lancet. Global health, 5 (10). e974. Ross, P. P. and Chitnis, N. and Pothin, E. and Smith, T. A.. (2017) A stochastic model for the probability of malaria extinction b mass drug administration. Malaria journal, 16. p. 376. Korenromp, Eline and Hamilton, Matthew and Sanders, Rachel and Mahiané, Guy and Briët, Olivier J. T. and Smith, Thomas and Winfrey, William and Walker, Neff and Stover, John. (2017) Impact of malaria interventions on child mortality in endemic African settings: comparison and alignment between LiST and Spectrum-Malaria model. BMC Public Health, 17 (Suppl 4). p. 781. Galactionova, Katya and Smith, Thomas A. and de Savigny, Don and Penny, Melissa A.. (2017) State of inequality in malaria intervention coverage in sub-Saharan African countries. BMC medicine, 15. p. 185. Penny, Melissa and Smith, Thomas. (2017) Plasmodium falciparum mortality in Africa between 1990 and 2015. The New England Journal of Medicine, 376. pp. 2493-2494. malERA Refresh Consultative Panel, . (2017) malERA: an updated research agenda for combination interventions and modelling in malaria elimination and eradication. PLoS medicine, 14 (11). e1002453. Halloran, M. Elizabeth and Auranen, Kari and Baird, Sarah and Basta, Nicole E. and Bellan, Steven E. and Brookmeyer, Ron and Cooper, Ben S. and DeGruttola, Victor and Hughes, James P. and Lessler, Justin and Lofgren, Eric T. and Longini, Ira M. and Onnela, Jukka-Pekka and Özler, Berk and Seage, George R. and Smith, Thomas A. and Vespignani, Alessandro and Vynnycky, Emilia and Lipsitch, Marc. (2017) Simulations for designing and interpreting intervention trials in infectious diseases. BMC medicine, 15. p. 223. 2016Homan, Tobias and Maire, Nicolas and Hiscox, Alexandra and Di Pasquale, Aurelio and Kiche, Ibrahim and Onoka, Kelvin and Mweresa, Collins and Mukabana, Wolfgang R. and Ross, Amanda and Smith, Thomas A. and Takken, Willem. (2016) Spatially variable risk factors for malaria in a geographically heterogeneous landscape, Western Kenya : an explorative study. Malaria journal, 15. p. 1. Penny, Melissa A. and Verity, Robert and Bever, Caitlin A. and Sauboin, Christophe and Galactionova, Katya and Flasche, Stefan and White, Michael T. and Wenger, Edward A. and Van de Velde, Nicolas and Pemberton-Ross, Peter and Griffin, Jamie T. and Smith, Thomas A. and Eckhoff, Philip A. and Muhib, Farzana and Jit, Mark and Ghani, Azra C.. (2016) Public health impact and cost-effectiveness of the RTS,S/AS01 malaria vaccine : a systematic comparison of predictions from four mathematical models. Lancet, 387 (10016). pp. 367-375. Kiware, Samson S. and Russell, Tanya L. and Mtema, Zacharia J. and Malishee, Alpha D. and Chaki, Prosper and Lwetoijera, Dickson and Chanda, Javan and Chinula, Dingani and Majambere, Silas and Gimnig, John E. and Smith, Thomas A. and Killeen, Gerry F.. (2016) A generic schema and data collection forms applicable to diverse entomological studies of mosquitoes. Source code for biology and medicine, 11. p. 4. Ross, Amanda and Koepfli, Cristian and Schoepflin, Sonja and Timinao, Lincoln and Siba, Peter and Smith, Thomas and Mueller, Ivo and Felger, Ingrid and Tanner, Marcel. (2016) The incidence and differential seasonal patterns of Plasmodium vivax primary infections and relapses in a cohort of children in Papua New Guinea. PLoS neglected tropical diseases, 10 (5). e0004582. Silkey, Mariabeth and Homan, Tobias and Maire, Nicolas and Hiscox, Alexandra and Mukabana, Richard and Takken, Willem and Smith, Thomas A.. (2016) Design of trials for interrupting the transmission of endemic pathogens. Trials, 17. p. 278. Korenromp, Eline and Mahiané, Guy and Hamilton, Matthew and Pretorius, Carel and Cibulskis, Richard and Lauer, Jeremy and Smith, Thomas A. and Briët, Olivier J. T.. (2016) Malaria intervention scale-up in Africa : effectiveness predictions for health programme planning tools, based on dynamic transmission modelling. Malaria journal, 15. p. 417. Homan, Tobias and Hiscox, Alexandra and Mweresa, Collins K. and Masiga, Daniel and Mukabana, Wolfgang R. and Oria, Prisca and Maire, Nicolas and Pasquale, Aurelio Di and Silkey, Mariabeth and Alaii, Jane and Bousema, Teun and Leeuwis, Cees and Smith, Thomas A. and Takken, Willem. (2016) The effect of mass mosquito trapping on malaria transmission and disease burden (SolarMal) : a stepped-wedge cluster-randomised trial. Lancet, 388 (10050). pp. 1193-1201. Hiscox, Alexandra and Homan, Tobias and Mweresa, Collins K. and Maire, Nicolas and Di Pasquale, Aurelio and Masiga, Daniel and Oria, Prisca A. and Alaii, Jane and Leeuwis, Cees and Mukabana, Wolfgang R. and Takken, Willem and Smith, Thomas A.. (2016) Mass mosquito trapping for malaria control in western Kenya : study protocol for a stepped wedge cluster-randomised trial. Trials, 17. p. 356. 2015Delrieu, I. and Leboulleux, D. and Ivinson, K. and Gessner, B. D. and Chandramohan, D. and Churcher, T. and Drakeley, C. and Halloran, E. and Killen, G. and Kleinschmidt, I. and Milligan, P. and Robert, V. and Rogier, C. and Saul, A. and Sinden, R. and Smith, T.. (2015) Design of a Phase III cluster randomized trial to assess the efficacy and safety of a malaria transmission blocking vaccine. Vaccine, 33 (13). pp. 1518-1526. Tiono, Alfred B. and Pinder, Margaret and N'Fale, Sagnon and Faragher, Brian and Smith, Tom and Silkey, Mariabeth and Ranson, Hilary and Lindsay, Steve W.. (2015) The AvecNet trial to assess whether addition of pyriproxyfen, an insect juvenile hormone mimic, to long-lasting insecticidal mosquito nets provides additional protection against clinical malaria over current best practice in an area with pyrethroid-resistant vectors in rural Burkina Faso: study protocol for a randomised controlled trial. Trials, Vol. 16 , 113. Galactionova, Katya and Tediosi, Fabrizio and de Savigny, Don and Smith, Thomas and Tanner, Marcel. (2015) Effective coverage and systems effectiveness for malaria case management in sub-saharan african countries. PLoS ONE, Vol. 10, H. 5 , e0127818. Briët, Olivier J. T. and Huho, Bernadette J. and Gimnig, John E. and Bayoh, Nabie and Seyoum, Aklilu and Sikaala, Chadwick H. and Govella, Nicodem and Diallo, Diadier A. and Abdullah, Salim and Smith, Thomas A. and Killeen, Gerry F.. (2015) Applications and limitations of centers for disease control and prevention miniature light traps for measuring biting densities of African malaria vector populations : a pooled-analysis of 13 comparisons with human landing catches. Malaria journal, Vol. 14 , 247. Penny, Melissa A. and Galactionova, Katya and Tarantino, Michael and Tanner, Marcel and Smith, Thomas A.. (2015) The public health impact of malaria vaccine RTS,S in malaria endemic Africa : country-specific predictions using 18 month follow-up Phase III data and simulation models. BMC medicine, Vol. 13 , 170. Bretscher, Michael T. and Maire, Nicolas and Felger, Ingrid and Owusu-Agyei, Seth and Smith, Tom. (2015) Asymptomatic Plasmodium falciparum infections may not be shortened by acquired immunity. Malaria journal, Vol. 14 , 294. Pemberton-Ross, Peter and Smith, Thomas A. and Hodel, Eva Maria and Kay, Katherine and Penny, Melissa A.. (2015) Age-shifting in malaria incidence as a result of induced immunological deficit : a simulation study. Malaria journal, Vol. 14 , 287. Cameron, Ewan and Battle, Katherine E. and Bhatt, Samir and Weiss, Daniel J. and Bisanzio, Donal and Mappin, Bonnie and Dalrymple, Ursula and Hay, Simon I. and Smith, David L. and Griffin, Jamie T. and Wenger, Edward A. and Eckhoff, Philip A. and Smith, Thomas A. and Penny, Melissa A. and Gething, Peter W.. (2015) Defining the relationship between infection prevalence and clinical incidence of Plasmodium falciparum malaria. Nature communications, Vol. 6 , Article Nr. 8170. Penny, Melissa A. and Maire, Nicolas and Bever, Caitlin A. and Pemberton-Ross, Peter and Briët, Olivier J. T. and Smith, David L. and Gething, Peter W. and Smith, Thomas A.. (2015) Distribution of malaria exposure in endemic countries in Africa considering country levels of effective treatment. Malaria journal, Vol. 14 , 384. Penny, Melissa A. and Pemberton-Ross, Peter and Smith, Thomas A.. (2015) The time-course of protection of the RTS,S vaccine against malaria infections and clinical disease. Malaria journal, 14. p. 437. Bhatt, S. and Weiss, D. J. and Cameron, E. and Bisanzio, D. and Mappin, B. and Dalrymple, U. and Battle, K. E. and Moyes, C. L. and Henry, A. and Eckhoff, P. A. and Wenger, E. A. and Briët, O. and Penny, M. A. and Smith, T. A. and Bennett, A. and Yukich, J. and Eisele, T. P. and Griffin, J. T. and Fergus, C. A. and Lynch, M. and Lindgren, F. and Cohen, J. M. and Murray, C. L. J. and Smith, D. L. and Hay, S. I. and Cibulskis, R. E. and Gething, P. W.. (2015) The effect of malaria control on Plasmodium falciparum in Africa between 2000 and 2015. Nature, 526 (7572). pp. 207-211. Slater, Hannah C. and Ross, Amanda and Ouédraogo, André Lin and White, Lisa J. and Nguon, Chea and Walker, Patrick G. T. and Ngor, Pengby and Aguas, Ricardo and Silal, Sheetal P. and Dondorp, Arjen M. and La Barre, Paul and Burton, Robert and Sauerwein, Robert W. and Drakeley, Chris and Smith, Thomas A. and Bousema, Teun and Ghani, Azra C.. (2015) Assessing the impact of next-generation rapid diagnostic tests on Plasmodium falciparum malaria elimination strategies. Nature, 528 (7580). S94-S101. Okell, L. and Slater, H. and Ghani, A. and Pemberton-Ross, P. and Smith, T. A. and Chitnis, N. and Penny, M. A. and Wenger, E. and Garardin, J. and Maude, R. and Aguas, R. and White, L. and Brady, O. and Hay, S. and Okiro, E. and Kern, S.. (2015) Consensus modelling evidence to support the design of mass drug administration programmes. Malaria Policy Advisory Committee meeting, 16-18 September 2015, Geneva Switzerland, Background document for Session 1. Geneva. 2014Lutambi, Angelina Mageni and Chitnis, Nakul and Briët, Olivier J. T. and Smith, Thomas A. and Penny, Melissa A.. (2014) Clustering of vector control interventions has important consequences for their effectiveness : a modelling study. PLoS ONE, Vol. 9, H. 5 , e97065. Briët, O. J. T. and Smith, T. A.. (2014) Response to ´Applying the ICMJE authorship criteria to operational research in low-income countries: the need to engage programme managers and policy makers` by Zachariah et al. (2013) TMIH 18, pp. 1025-1028. Tropical medicine and international health, 19 (1). p. 128. Rumisha, Susan F. and Smith, Thomas A. and Masanja, Honorati and Abdulla, Salim and Vounatsou, Penelope. (2014) Relationship between child survival and malaria transmission : an analysis of the malaria transmission intensity and mortality burden across Africa (MTIMBA) project data in Rufiji demographic surveillance system, Tanzania. Malaria journal, Vol. 13 , 124. Mikkelsen-Lopez, Inez and Shango, Winna and Barrington, Jim and Ziegler, Rene and Smith, Tom and de Savigny, Don. (2014) The challenge to avoid anti-malarial medicine stock-outs in an era of funding partners : the case of Tanzania. Malaria journal, Vol. 13 , 181. Rumisha, Susan Fred and Smith, Thomas and Abdulla, Salim and Masanja, Honorath and Vounatsou, Penelope. (2014) Modelling heterogeneity in malaria transmission using large sparse spatio-temporal entomological data. Global health action, Vol. 7 , 22682. Tchicaya, Emile S. and Nsanzabana, Christian and Smith, Thomas A. and Donzé, Jennifer and de Hipsl, Maiti Laserna and Tano, Yao and Müller, Pie and Briët, Olivier Jt and Utzinger, Jürg and Koudou, Benjamin G.. (2014) Micro-encapsulated pirimiphos-methyl shows high insecticidal efficacy and long residual activity against pyrethroid-resistant malaria vectors in central Côte d'Ivoire. Malaria journal, Vol. 13 , 332. Stuckey, Erin M. and Smith, Thomas and Chitnis, Nakul. (2014) Seasonally dependent relationships between indicators of malaria transmission and disease provided by mathematical model simulations. PLoS Computational Biology, Vol. 10, H. 9 , e1003812. Stuckey, Erin M. and Stevenson, Jennifer and Galactionova, Katya and Baidjoe, Amrish Y. and Bousema, Teun and Odongo, Wycliffe and Kariuki, Simon and Drakeley, Chris and Smith, Thomas A. and Cox, Jonathan and Chitnis, Nakul. (2014) Modeling the cost effectiveness of malaria control interventions in the highlands of western Kenya. PLoS ONE, Vol. 9, H. 10 , e107700. Bennett, Adam and Yukich, Joshua and Miller, John M. and Vounatsou, Penelope and Hamainza, Busiku and Ingwe, Mercy M. and Moonga, Hawela B. and Kamuliwo, Mulakwo and Keating, Joseph and Smith, Thomas A. and Steketee, Richard W. and Eisele, Thomas P.. (2014) A methodological framework for the improved use of routine health system data to evaluate national malaria control programs : evidence from Zambia. Population health metrics, Vol. 12 , 30. Saksena, Priyanka and Smith, Thomas and Tediosi, Fabrizio. (2014) Inputs for universal health coverage : a methodological contribution to finding proxy indicators for financial hardship due to health expenditure. BMC health services research, Vol. 14 , 577. Balam, Saidou and Olugbile, Sope and Servis, Catherine and Diakité, Mahamadou and D'Alessandro, Alba and Frank, Geraldine and Moret, Remy and Nebie, Issa and Tanner, Marcel and Felger, Ingrid and Smith, Thomas and Kajava, Andrey V. and Spertini, François and Corradin, Giampietro. (2014) Plasmodium falciparum merozoite surface protein 2: epitope mapping and fine specificity of human antibody response against non-polymorphic domains. Malaria journal, Vol. 13 , 510. 2013Huho, B. and Briët, O. and Seyoum, A. and Sikaala, C. and Bayoh, N. and Gimnig, J. and Okumu, F. and Diallo, D. and Abdulla, S. and Smith, T. and Killeen, G.. (2013) Consistently high estimates for the proportion of human exposure to malaria vector populations occurring indoors in rural Africa. International journal of epidemiology : official journal of the international epidemiological association, Vol. 42, H. 1. pp. 235-247. Crowell, V. and Briët, O. J. and Hardy, D. and Chitnis, N. and Maire, N. and Di, Pasquale and Smith, T. A.. (2013) Modelling the cost-effectiveness of mass screening and treatment for reducing Plasmodium falciparum malaria burden. Malaria Journal, Vol. 12 , 4. Lutambi, A. M. and Penny, M. A. and Smith, T. and Chitnis, N.. (2013) Mathematical modelling of mosquito dispersal in a heterogeneous environment. Mathematical biosciences : an international journal, Vol. 241, H. 2. pp. 198-216. Crowell, Valerie and Yukich, Joshua O. and Briët, Olivier J. T. and Ross, Amanda and Smith, Thomas A.. (2013) A novel approach for measuring the burden of uncomplicated Plasmodium falciparum malaria : application to data from Zambia. PLoS ONE, Vol. 8, H. 2 , e57297. Rumisha, S. F. and Smith, T. and Abdulla, S. and Masanja, H. and Vounatsou, P.. (2013) Assessing seasonal variations and age patterns in mortality during the first year of life in Tanzania. Acta tropica : Zeitschrift für Tropenwissenschaften und Tropenmedizin, 126 (1). pp. 28-36. Kasasa, Simon and Asoala, Victor and Gosoniu, Laura and Anto, Francis and Adjuik, Martin and Tindana, Cletus and Smith, Thomas and Owusu-Agyei, Seth and Vounatsou, Penelope. (2013) Spatio-temporal malaria transmission patterns in Navrongo demographic surveillance site, northern Ghana. Malaria journal, Vol. 12 , 63. Smith, T.. (2013) DALY thought. New scientist, Vol. 218, H. 2914 , 35. Saul, Allan and Smith, Tom and Maire, Nicolas. (2013) Stochastic simulation of endemic Salmonella enterica serovar typhi : the importance of long lasting immunity and the carrier state. PLoS ONE, Vol. 8, H. 9 , e74097. Nunes, Julia K. and Cárdenas, Vicky and Loucq, Christian and Maire, Nicolas and Smith, Thomas and Shaffer, Craig and Måseide, Kårstein and Brooks, Alan. (2013) Modeling the public health impact of malaria vaccines for developers and policymakers. BMC infectious diseases, Vol. 13 , 295. Stuckey, Erin M. and Smith, Thomas A. and Chitnis, Nakul. (2013) Estimating malaria transmission through mathematical models. Trends in parasitology, Vol. 29, H. 10. pp. 477-482. 2012Brooks, A. and Smith, T. A. and de Savigny, D. and Lengeler, C.. (2012) Implementing new health interventions in developing countries: why do we lose a decade or more? BMC public health, Vol. 12 , 683. Chitnis, N. and Smith, T. A.. (2012) Mathematical illiteracy impedes progress in biology. Proceedings of the National Academy of Sciences of the United States of America, Vol. 109, H. 45 , E3055. Felger, I. and Maire, N. and Bretscher, M. and Falk, N. and Tiaden, A. and Sama, W. and Beck, H. P. and Owusu-Agyei, S. and Smith, T. A.. (2012) The dynamics of natural Plasmodium falciparum infections. PLoS ONE, Vol. 7, H. 9 , e45542. Mueller, Ivo and Schoepflin, Sonja and Smith, Thomas A. and Benton, Kathryn L. and Bretscher, Michael T. and Lin, Enmoore and Kiniboro, Benson and Zimmerman, Peter A. and Speed, Terence P. and Siba, Peter and Felger, Ingrid. (2012) Force of infection is key to understanding the epidemiology of Plasmodium falciparum malaria in Papua New Guinean children. Proceedings of the National Academy of Sciences of the United States of America, 109 (25). pp. 10030-10035. Ross, Amanda and Koepfli, Cristian and Li, Xiaohong and Schoepflin, Sonja and Siba, Peter and Mueller, Ivo and Felger, Ingrid and Smith, Thomas. (2012) Estimating the numbers of malaria infections in blood samples using high-resolution genotyping data. PLoS ONE, 7 (8). e42496. Amek, N. and Bayoh, N. and Hamel, M. and Lindblade, K. A. and Gimnig, J. and Odhiambo, F. and Laserson, K. F. and Slutsker, L. and Smith, T. and Vounatsou, P.. (2012) Spatial and temporal dynamics of malaria transmission in rural western Kenya. Parasites and Vectors, 5 (86). Chitnis, N. and Hardy, D. and Smith, T.. (2012) A periodically-forced mathematical model for the seasonal dynamics of malaria in mosquitoes. Bulletin of mathematical biology, Vol. 74, H. 5. pp. 1098-1124. Brooks, A. and Briët, O. J. and Hardy, D. and Steketee, R. and Smith, T. A.. (2012) Simulated impact of RTS,S/AS01 vaccination programs in the context of changing malaria transmission. PLoS ONE, Vol. 7, H. 3 , e32587. Smith, T. and Schapira, A.. (2012) Reproduction numbers in malaria and their implications. Trends in parasitology, Vol. 28, H. 1. pp. 3-8. Briët, O. J. T. and Smith, T. A. and Chitnis, N.. (2012) Measurement of overall insecticidal effects in experimental hut trials. Parasites and Vectors, 5 (256). Ferguson, H. M. and Maire, N. and Takken, W. and Lyimo, I. N. and Briët, O. and Lindsay, S. W. and Smith, T. A.. (2012) Selection of mosquito life-histories : a hidden weapon against malaria? Malaria journal, Vol. 11 , 106. Yukich, J. and Briët, O. and Bretscher, M. T. and Bennett, A. and Lemma, S. and Berhane, Y. and Eisele, T. P. and Keating, J. and Smith, T.. (2012) Estimating Plasmodium falciparum transmission rates in low-endemic settings using a combination of community prevalence and health facility data. PLoS ONE, Vol. 7, H. 8 , e42861. Crowell, V. and Hardy, D. and Briët, O. and Chitnis, N. and Maire, N. and Smith, T.. (2012) Can we depend on case management to prevent re-establishment of P. falciparum malaria, after local interruption of transmission? Epidemics : the journal of infectious disease dynamics, Vol. 4, H. 1. pp. 1-8. Stuckey, E. M. and Stevenson, J. C. and Cooke, M. K. and Owaga, C. and Marube, E. and Oando, G. and Hardy, D. and Drakeley, C. and Smith, T. A. and Cox, J. and Chitnis, N.. (2012) Simulation of malaria epidemiology and control in the highlands of western Kenya. Malaria journal, Vol. 11 , 356. Smith, Thomas and Tediosi, Fabrizio. (2012) Simulating the impact of malaria vaccination : what has been learnt? Expert review of vaccines, Vol. 11, H. 7. pp. 751-753. Briët, O. J. T. and Hardy, D. and Smith, T. A.. (2012) Importance of factors determining the effective lifetime of a mass, long-lasting, insecticidal net distribution : a sensitivity analysis. Malaria journal, Vol. 11 , 20. Smith, T. and Ross, A. and Maire, N. and Chitnis, N. and Studer, A. and Hardy, D. and Brooks, A. and Penny, M. and Tanner, M.. (2012) Ensemble modeling of the likely public health impact of a pre-erythrocytic malaria vaccine. PLoS medicine, Vol. 9, H.1 , e1001157. Huho, B. J. and Killeen, G. F. and Ferguson, H. M. and Tami, A. and Lengeler, C. and Charlwood, J. D. and Kihonda, A. and Kihonda, J. and Kachur, S. P. and Smith, T. A. and Abdulla, S. M.. (2012) Artemisinin-based combination therapy does not measurably reduce human infectiousness to vectors in a setting of intense malaria transmission. Malaria journal, Vol. 11 , 118. 2011Koepfli, Cristian and Schoepflin, Sonja and Bretscher, Michael and Lin, Enmoore and Kiniboro, Benson and Zimmerman, Peter A. and Siba, Peter and Smith, Thomas A. and Mueller, Ivo and Felger, Ingrid. (2011) How much remains undetected? : probability of molecular detection of human Plasmodia in the field. PLoS ONE, 6 (4). e19010. Koepfli, Cristian and Ross, Amanda and Kiniboro, Benson and Smith, Thomas A. and Zimmerman, Peter A. and Siba, Peter and Mueller, Ivo and Felger, Ingrid. (2011) Multiplicity and Diversity of Plasmodium vivax Infections in a Highly Endemic Region in Papua New Guinea. PLoS Neglected Tropical Diseases, 5 (12). e1424. Amek, N. and Bayoh, N. and Hamel, M. and Lindblade, K. A. and Gimnig, J. and Laserson, K. F. and Slutsker, L. and Smith, T. and Vounatsou, P.. (2011) Spatio-temporal modeling of sparse geostatistical malaria sporozoite rate data using a zero inflated binomial model. Spatial and spatio-temporal epidemiology, Vol. 2, H. 4. pp. 283-290. Bretscher, M. T. and Maire, N. and Chitnis, N. and Felger, I. and Owusu-Agyei S., and Smith, T.. (2011) The distribution of Plasmodium falciparum infection durations. Epidemics : the journal of infectious disease dynamics, Vol. 3, H. 2. pp. 109-118. Durán Pacheco G., and Christen, A. and Arnold, B. and Hattendorf, J. and Colford, J. M. and Smith, T. A. and Mäusezahl, D.. (2011) Reporting diarrhoea through a vernacular term in Quechua-speaking settings of rural Bolivia. Journal of health, population and nutrition, Vol. 29, H. 6. pp. 552-559. Ross, A. and Maire, N. and Sicuri, E. and Smith, T. and Conteh, L.. (2011) Determinants of the cost-effectiveness of intermittent preventive treatment for malaria in infants and children. PLoS ONE, Vol. 6, H. 4 , e18391. The maIera Consultative Group on Modeling, . (2011) A research agenda for malaria eradication : modeling. PLoS medicine, Vol. 8, H. 1 , e1000403. Smith, T. A. and Chitnis, N. and Briët, O. J. and Tanner, M.. (2011) Uses of mosquito-stage transmission-blocking vaccines against Plasmodium falciparum. Trends in parasitology, 27 (5). pp. 190-196. The maIera Consultative Group on Integration Strategies, . (2011) A research agenda for malaria eradication : cross-cutting issues for eradication. PLoS medicine, Vol. 8, H. 1 , e1000404. Maire, N. and Shillcutt, S. D. and Walker, D. G. and Tediosi, F. and Smith, T. A.. (2011) Cost-effectiveness of the introduction of a pre-erythrocytic malaria vaccine into the expanded program on immunization in Sub-Saharan Africa : analysis of uncertainties using a stochastic individual-based simulation model of Plasmodium falciparum malaria. Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research, Vol. 14, H. 8. pp. 1028-1038. 2010Russell, T. L. and Lwetoijera, D. W. and Maliti, D. and Chipwaza, B. and Kihonda, J. and Charlwood, J. D. and Smith, T. A. and Lengeler, C. and Mwanyangala, M. A. and Nathan, R. and Knols, B. G. and Takken, W. and Killeen, G. F.. (2010) Impact of promoting longer-lasting insecticide treatment of bed nets upon malaria transmission in a rural Tanzanian setting with pre-existing high coverage of untreated nets. Malaria Journal, Vol. 9 , 187. Ross, A. and Smith, T.. (2010) Interpreting malaria age-prevalence and incidence curves : a simulation study of the effects of different types of heterogeneity. Malaria Journal, Vol. 9 , 132. Marfurt, J. and Smith, T. A. and Hastings, I. M. and Müller, I. and Sie, A. and Oa, O. and Baisor, M. and Reeder, J. C. and Beck, H. P. and Genton, B.. (2010) Plasmodium falciparum resistance to anti-malarial drugs in Papua New Guinea: evaluation of a community-based approach for the molecular monitoring of resistance. Malaria Journal, Vol. 9 , 8. Bretscher, M. T. and Valsangiacomo, F. and Owusu-Agyei S., and Penny, M. A. and Felger, I. and Smith, T.. (2010) Detectability of Plasmodium falciparum clones. Malaria Journal, Vol. 9 , 234. Nsanzabana, C. and Hastings, I. M. and Marfurt, J. and Müller, I. and Baea, K. and Rare, L. and Schapira, A. and Felger, I. and Betschart, B. and Smith, T. A. and Beck, H. P. and Genton, B.. (2010) Quantifying the evolution and impact of antimalarial drug resistance: drug use, spread of resistance, and drug failure over a 12-year period in Papua New Guinea. Journal of infectious diseases, Vol. 201, no. 3. pp. 435-443. Hastings, I. M. and Nsanzabana, C. and Smith, T. A.. (2010) A comparison of methods to detect and quantify the markers of antimalarial drug resistance. American journal of tropical medicine and hygiene, Vol. 83, H. 3. pp. 489-495. Carneiro, I. and Smith, L. and Ross, A. and Roca-Feltrer A., and Greenwood, B. and Schellenberg, J. A. and Smith, T. and Schellenberg, D.. (2010) Intermittent preventive treatment for malaria in infants : a decision-support tool for sub-Saharan Africa. Bulletin de l'Organisation mondiale de la santé = Bulletin of the World Health Organization, Vol. 88, H. 11. pp. 807-814. Duthaler, U. and Smith, T. A. and Keiser, J.. (2010) In vivo and in vitro sensitivity of Fasciola hepatica to combinations of triclabendazole and artesunate, artemether or OZ78. Antimicrobial agents and chemotherapy : AAC, Vol. 54, H. 11. pp. 4596-4604. Chitnis, Nakul and Schapira, Allan and Smith, David L. and Hay, Simon and Smith, Thomas and Steketee, Richard. (2010) Mathematical modelling to support malaria control and elimination. Progress & Impact Series, no. 5. Geneva. Chitnis, N. and Schapira, A. and Smith, D. L. and Smith, T. and Hay, S. I. and Steketee, R.. (2010) Modélisation mathématique pour le contrôle et l'élimination du paludisme. Collection progrès et impact, Nr. 5. Genève. Chitnis, N. and Schapira, A. and Smith, T. and Steketee, R.. (2010) Comparing the effectiveness of Malaria vector-control interventions through a mathematical model. American journal of tropical medicine and hygiene, 83 (2). pp. 230-240. 2009Müller, Ivo and Genton, Blaise and Rare, Lawrence and Kiniboro, Benson and Kastens, Will and Zimmerman, Peter and Kazura, James and Alpers, Michael and Smith, Thomas A.. (2009) Three different Plasmodium species show similar patterns of clinical tolerance of malaria infection. Malaria Journal, 8. p. 158. Müller, Ivo and Widmer, Simone and Michel, Daniela and Maraga, Seri and McNamara, David T. and Kiniboro, Benson and Sie, Albert and Smith, Thomas A. and Zimmerman, Peter A.. (2009) High sensitivity detection of Plasmodium species reveals positive correlations between infections of different species, shifts in age distribution and reduced local variation in Papua New Guinea. Malaria Journal, 8 (41). Pluess, Bianca and Mueller, Ivo and Levi, Damien and King, Graham and Smith, Thomas A. and Lengeler, Christian. (2009) Malaria - a major health problem within an oil palm plantation around Popondetta, Papua New Guinea. Malaria Journal, 8. p. 56. Tediosi, F. and Maire, N. and Penny, M. and Studer, A. and Smith, T. A.. (2009) Simulation of the cost-effectiveness of malaria vaccines. Malaria Journal, Vol. 8 , 127. Flueck, C. and Frank, G. and Smith, T. and Jafarshad, A. and Nebie, I. and Sirima, S. B. and Olugbile, S. and Alonso, P. and Tanner, M. and Druilhe, P. and Felger, I. and Corradin, G.. (2009) Evaluation of two long synthetic merozoite surface protein 2 peptides as malaria vaccine candidates. Vaccine : the official journal of the International Society for Vaccines, 27 (20). pp. 2653-2661. Bongfen, S. E. and Ntsama, P. M. and Offner, S. and Smith, T. and Felger, I. and Tanner, M. and Alonso, P. and Nebie, I. and Romero, J. F. and Silvie, O. and Torgler, R. and Corradin, G.. (2009) The N-terminal domain of Plasmodium falciparum circumsporozoite protein represents a target of protective immunity. Vaccine : the official journal of the International Society for Vaccines, 27 (2). pp. 328-335. Durán Pacheco G., and Hattendorf, J. and Colford, J. M. and Mäusezahl, D. and Smith, T.. (2009) Performance of analytical methods for overdispersed counts in cluster randomized trials: sample size, degree of clustering and imbalance. Statistics in medicine, Vol. 28, H. 24. pp. 2989-3011. Keiser, Jennifer and Xiao, Shu-Hua and Smith, Thomas A. and Utzinger, Jürg. (2009) Combination chemotherapy against Clonorchis sinensis : experiments with artemether, artesunate, OZ78, praziquantel, and tribendimidine in the rat model. Antimicrobial agents and chemotherapy, Vol. 53, H. 9. pp. 3770-3776. Saxer, Franziska and Widmer, Andreas and Fehr, Jan and Soka, Isaac and Kibatala, Pascience and Urassa, Honorathy and Frei, Reno and Smith, Thomas and Hatz, Christoph. (2009) Benefit of a single preoperative dose of antibiotics in a sub-saharan district hospital: minimal input, massive impact. Annals of surgery : a monthly review of surgical science and practice, Vol. 249, H. 2. pp. 322-326. Gosoniu, L. and Vounatsou, P. and Sogoba, N. and Maire, N. and Smith, T.. (2009) Mapping malaria risk in West Africa using a Bayesian nonparametric non-stationary model. Computational statistics & data analysis : the official journal of IASC, ISI, Vol. 53, H. 9. pp. 3358-3371. Mäusezahl, D. and Christen, A. and Duran Pacheco G., and Tellez, F. A. and Iriarte, M. and Zapata, M. E. and Cevallos, M. and Hattendorf, J. and Daigl Cattaneo M., and Arnold, B. and Smith, T. A. and Colford, J. M.. (2009) Solar drinking water disinfection (SODIS) to reduce childhood diarrhoea in rural Bolivia: a cluster-randomized, controlled trial. PLoS medicine, Vol. 6, H. 8 , e1000125. 2007Abdullah, Salim and Adazu, Kubaje and Masanja, Honorati and Diallo, Diadier and Hodgson, Abraham and Ilboudo-Sanogo, Edith and Nhacolo, Ariel and Owusu-Agyei, Seth and Thompson, Ricardo and Smith, Thomas and Binka, Fred N.. (2007) Patterns of age-specific mortality in children in endemic areas of sub-Saharan Africa. American journal of tropical medicine and hygiene, 77 (6 Suppl.). pp. 99-105. |
