Browse by Basel Contributors ID

2022

Rima, Luca and Zimmermann, Michael and Fränkl, Andri and Clairfeuille, Thomas and Lauer, Matthias and Engel, Andreas and Engel, Hans-Andreas and Braun, Thomas. (2022) cryoWriter: a blotting free cryo-EM preparation system with a climate jet and cover-slip injector. Faraday Discussions, 240. pp. 55-66.

2020

Mortelmans, Thomas and Kazazis, Dimitrios and Guzenko, Vitaliy A. and Padeste, Celestino and Braun, Thomas and Stahlberg, Henning and Li, Xiaodan and Ekinci, Yasin. (2020) Grayscale e-beam lithography: Effects of a delayed development for well-controlled 3D patterning. Microelectronic Engineering, 225. p. 111272.

2019

Schmidli, Claudio and Albiez, Stefan and Rima, Luca and Righetto, Ricardo and Mohammed, Inayatulla and Oliva, Paola and Kovacik, Lubomir and Stahlberg, Henning and Braun, Thomas. (2019) Microfluidic protein isolation and sample preparation for high resolution cryo-EM.

Schmidli, Claudio and Albiez, Stefan and Rima, Luca and Righetto, Ricardo and Mohammed, Inayatulla and Oliva, Paolo and Kovacik, Lubomir and Stahlberg, Henning and Braun, Thomas. (2019) Microfluidic protein isolation and sample preparation for high-resolution cryo-EM. Proceedings of the National Academy of Sciences of the United States of America, 116 (30). pp. 15007-15012.

Oliva, Paolo and Bircher, Benjamin Andreas and Schoenenberger, Cora-Ann and Braun, Thomas. (2019) Array based real-time measurement of fluid viscosities and mass-densities to monitor biological filament formation. Lab on a chip, 19 (7). pp. 1305-1314.

Syntychaki, Anastasia and Rima, Luca and Schmidli, Claudio and Stohler, Thomas and Bieri, Andrej and Sütterlin, Rosmarie and Stahlberg, Henning and Castaño-Díez, Daniel and Braun, Thomas. (2019) "Differential Visual Proteomics": Enabling the Proteome-Wide Comparison of Protein Structures of Single-Cells. Journal of proteome research, 18 (9). pp. 3521-3531.

2018

Schmidli, Claudio and Rima, Luca and Arnold, Stefan A. and Stohler, Thomas and Syntychaki, Anastasia and Bieri, Andrej and Albiez, Stefan and Goldie, Kenneth N. and Chami, Mohamed and Stahlberg, Henning and Braun, Thomas. (2018) Miniaturized Sample Preparation for Transmission Electron Microscopy. Journal of Visualized Experiments (137). e57310.

Arnold, Stefan A. and Müller, Shirley A. and Schmidli, Claudio and Syntychaki, Anastasia and Rima, Luca and Chami, Mohamed and Stahlberg, Henning and Goldie, Kenneth N. and Braun, Thomas. (2018) Miniaturizing EM Sample Preparation: Opportunities, Challenges, and "Visual Proteomics". Proteomics, 18 (5-6). p. 1700176.

2017

Arnold, Stefan A. and Albiez, Stefan and Bieri, Andrej and Syntychaki, Anastasia and Adaixo, Ricardo and McLeod, Robert A. and Goldie, Kenneth N. and Stahlberg, Henning and Braun, Thomas. (2017) Blotting-free and lossless cryo-electron microscopy grid preparation from nanoliter-sized protein samples and single-cell extracts. Journal of Structural Biology, 197 (3). pp. 220-226.

Opara, Nadia and Martiel, Isabelle and Arnold, Stefan A. and Braun, Thomas and Stahlberg, Henning and Makita, Mikako and David, Christian and Padeste, Celestino. (2017) Direct protein crystallization on ultrathin membranes for diffraction measurements at X-ray free-electron lasers. Journal of applied crystallography, 50 (3). pp. 909-918.

2016

Arnold, Stefan A. and Albiez, Stefan and Opara, Nadia and Chami, Mohamed and Schmidli, Claudio and Bieri, Andrej and Padeste, Celestino and Stahlberg, Henning and Braun, Thomas. (2016) Total Sample Conditioning and Preparation of Nanoliter Volumes for Electron Microscopy. ACS Nano, 10 (5). pp. 4981-4988.

Bircher, Benjamin A. and Krenger, Roger and Braun, Thomas. (2016) Automated high-throughput viscosity and density sensor using nanomechanical resonators. Sensors and Actuators B: Chemical , 223. pp. 784-790.

2015

Escobedo, C. and Bürgel, S. C. and Kemmerling, S. and Sauter, N. and Braun, T. and Hierlemann, A.. (2015) On-chip lysis of mammalian cells through a handheld corona device. Lab on a chip, 15 (14). pp. 2990-2997.

2014

Ramakrishnan, Chandrasekhar and Bieri, Andrej and Sauter, Nora and Roizard, Sophie and Ringler, Philippe and Müller, Shirley A. and Goldie, Kenneth N. and Enimanev, Kaloyan and Stahlberg, Henning and Rinn, Bernd and Braun, Thomas. (2014) openBEB: open biological experiment browser for correlative measurements. BMC bioinformatics, 15. p. 84.

Giss, Dominic and Kemmerling, Simon and Dandey, Venkata and Stahlberg, Henning and Braun, Thomas. (2014) Exploring the interactome : microfluidic isolation of proteins and interacting partners for quantitative analysis by electron microscopy. Analytical chemistry, 86 (10). pp. 4680-4687.

Bircher, Benjamin A. and Krenger, Roger and Braun, Thomas. (2014) Influence of squeeze-film damping on higher-mode microcantilever vibrations in liquid. EPJ Techniques and Instrumentation, 1. p. 10.

Bircher, Benjamin A. and Braun, Thomas. (2014) Microcantilever vibrations to characterize fluids with high temporal resolution. In: Proceedings of the 11th nanomechanical sensing workshop (NMC). pp. 26-27.

2013

Kemmerling, Simon and Arnold, Stefan A. and Bircher, Benjamin A. and Sauter, Nora and Escobedo, Carlos and Dernick, Gregor and Hierlemann, Andreas and Stahlberg, Henning and Braun, Thomas. (2013) Single-cell lysis for visual analysis by electron microscopy. Journal of Structural Biology, 183 (3). pp. 467-473.

Bircher, Benjamin A. and Dümpelmann, Luc and Renggli, Kasper and Lang, Hans Peter and Gerber, Christoph and Bruns, Nico and Braun, Thomas. (2013) Real-Time Viscosity and Mass Density Sensors Requiring Microliter Sample Volume Based on Nanomechanical Resonators. Analytical Chemistry, 85 (18). pp. 8676-8683.

Bircher, Benjamin Andreas and Duempelmann, Luc and Lang, Hans Peter and Gerber, Christoph and Braun, Thomas. (2013) Photothermal excitation of microcantilevers in liquid: effect of the excitation laser position on temperature and vibrational amplitude. Micro and Nano Letters, 8 (11). pp. 770-774.

2012

Weidmann, Simon and Kemmerling, Simon and Mädler, Stefanie and Stahlberg, Henning and Braun, Thomas and Zenobi, Renato. (2012) Ionic liquids as matrices in microfluidic sample deposition for high-mass matrix-assisted laser desorption/ionization mass spectrometry. European journal of mass spectrometry, 18 (3). pp. 279-286.

Kemmerling, Simon and Ziegler, Jörg and Schweighauser, Gabriel and Arnold, Stefan A. and Giss, Dominic and Müller, Shirley A. and Ringler, Philippe and Goldie, Kenneth N. and Goedecke, Nils and Hierlemann, Andreas and Stahlberg, Henning and Engel, Andreas and Braun, Thomas. (2012) Connecting μ-fluidics to electron microscopy. Journal of Structural Biology, 177 (1). pp. 128-134.

2010

Backmann, Natalija and Kappeler, Natascha and Braun, Thomas and Huber, François and Lang, Hans-Peter and Gerber, Christoph and Lim, Roderick Y. H.. (2010) Sensing surface PEGylation with microcantilevers. Beilstein Journal of Nanotechnology, 1. pp. 3-13.

2009

Braun, Thomas and Ghatkesar, Murali Krishna and Backmann, Natalija and Grange, Wilfried and Boulanger, Pascale and Letellier, Lucienne and Lang, Hans-Peter and Bietsch, Alex and Gerber, Christoph and Hegner, Martin. (2009) Quantitative time-resolved measurement of membrane protein-ligand interactions using microcantilever array sensors. Nature Nanotechnology, 4 (3). pp. 179-185.

Braun, Thomas and Ghatkesar, Murali Krishna. (2009) Technologies at Hand: Measuring the intrinsic nanomechanics of molecular interactions with microcantilever sensors. European Journal of Nanomedicine, 2 (1). pp. 13-15.

2008

Ghatkesar, Murali Krishna and Lang, Hans-Peter and Gerber, Christoph and Hegner, Martin and Braun, Thomas. (2008) Comprehensive characterization of molecular interactions based on nanomechanics. PLoS ONE, 3 (11). e3610.

Ghatkesar, Murali Krishna and Braun, Thomas and Barwich, Viola and Ramseyer, Jean-Pierre and Gerber, Christoph and Hegner, Martin and Lang, Hans Peter. (2008) Resonating modes of vibrating microcantilevers in liquid. Applied Physics Letters, 92 (4). 043106.

Ghatkesar, Murali Krishna and Rakhmatullina, Ekaterina and Lang, Hans-Peter and Gerber, Christoph and Hegner, Martin and Braun, Thomas. (2008) Multi-parameter microcantilever sensor for comprehensive characterization of Newtonian fluids. Sensors and Actuators B: Chemical , 135 (1). pp. 133-138.

2007

Rakhmatullina, Ekaterina and Braun, Thomas and Kaufmann, Thomas and Spillmann, Hannes and Malinova, Violeta and Meier, Wolfgang. (2007) Functionalization of Gold and Silicon Surfaces by Copolymer Brushes Using Surface-Initiated ATRP. Macromolecular Chemistry and Physics, 208 (12). pp. 1283-1293.

Rakhmatullina, Ekaterina and Braun, Thomas and Chami, Mohamed and Malinova, Violeta and Meier, Wolfgang. (2007) Self-Organization Behavior of Methacrylate-Based Amphiphilic Di- and Triblock Copolymers. Langmuir, 23 (24). pp. 12371-12379.

Ghatkesar, Murali Krishna and Barwich, Viola and Braun, Thomas and Ramseyer, Jean-Pierre and Gerber, Christoph and Hegner, Martin and Lang, Hans Peter and Drechsler, Ute and Despont, Michel. (2007) Higher modes of vibration increase mass sensitivity in nanomechanical microcantilevers. Nanotechnology, 18 (44). p. 445502.

Park, K. K. and Lee, H. J. and Yaralioglu, G. G. and Ergun, A. S. and Oralkan, Ö. and Kupnik, M. and Quate, C. F. and Khuri-Yakub, B. T. and Braun, T. and Ramseyer, J. -P. and Lang, H. P. and Hegner, M. and Gerber, Ch. and Gimzewski, J. K.. (2007) Capacitive micromachined ultrasonic transducers for chemical detection in nitrogen. Applied Physics Letters, 91 (9). 094102.

Braun, T. and Ghatkesar, M. K. and Barwich, V. and Backmann, N. and Huber, F. and Grange, W. and Nugaeva, N. and Lang, H. P. and Ramseyer, J. P. and Gerber, Ch and Hegner, M.. (2007) Digital processing of multi-mode nano-mechanical cantilever data. In: International Conference on Nanoscience and Technology (ICN&T 2006). pp. 341-345.

Braun, Thomas and Huber, François and Ghatkesar, Murali Krishna and Backmann, Natalija and Lang, Hans Peter and Gerber, Christoph and Hegner, Martin. (2007) Processing of kinetic microarray signals. Sensors and actuators. B, Chemical, 128 (1). pp. 75-82.

Khuri-Yakub, B. T. and Park, K. K. and Lee, H. J. and Yaralioglu, G. G. and Ergun, S. and Oralkan, O. and Kupnik, M. and Quate, C. F. and Braun, T. and Lang, H. P. and Hegner, Martin and Ramseyer, Jean-Pierre and Gerber, Christoph and Gimzewski, J.. (2007) The capacitive micromachined ultrasonic transducer (CMUT) as a chem/bio sensor. In: 2007 IEEE Ultrasonics Symposium Proceedings. pp. 472-475.

2006

Braun, Thomas and Backmann, Natalija and Vogtli, Manuel and Bietsch, Alexander and Engel, Andreas and Lang, Hans-Peter and Gerber, Christoph and Hegner, Martin. (2006) Conformational change of bacteriorhodopsin quantitatively monitored by microcantilever sensors. Biophysical journal, 90 (8). pp. 2970-2977.

2005

Kukulski, Wanda and Schenk, Andreas and Braun, Thomas and Karlsson, Maria and Kjellbom, Peter and Fotiadis, Dimitrios and Engel, Andreas. (2005) The 5 structure of heterologously expressed plant aquaporin PM28A. In: IUBMB 50th Anniversary Symposium. p. 192.

Braun, Thomas and Kaufmann, Thomas C. and Rémigy, Hervé-W. and Engel, Andreas. (2005) Two‐dimensional Crystallization of Membrane Proteins. In: Encyclopedic Reference of Genomics and Proteomics in Molecular Medicine, 2: M - Z. Berlin, pp. 1936-1942.

Braun, Thomas and Engel, Andreas. (2005) Two-dimensional electron crystallography. In: Encyclopedia of life sciences. Hoboken, New Jersey, pp. 1-7.

2004

Braun, Thomas. 2D-crystallization and 3D-structures of membrane channels and transporters. 2004, Doctoral Thesis, University of Basel, Faculty of Science.

Ghatkesar, Murali K. and Barwich, V. and Braun, T. and Bredekamp, A. H. and Drechsler, U. and Despont, M. and Lang, H. P. and Hegner, M. and Gerber, C.. (2004) Real-time mass sensing by nanomechanical resonators in fluid. In: Proceedings of the IEEE Sensors 2004, 2. Piscataway, New Jersey, pp. 1060-1063.

2001

Stahlberg, Henning and Fotiadis, Dimitrios and Scheuring, Simon and Rémigy, Hervé and Braun, Thomas and Mitsuoka, Kaoru and Fujiyoshi, Yoshinori and Engel, Andreas. (2001) Two-dimensional crystals : a powerful approach to assess structure, function and dynamics of membrane proteins. FEBS letters, 504 (3). pp. 166-172.

2000

Stahlberg, Henning and Braun, Thomas and de Groot, Bert and Philippsen, Ansgar and Borgnia, Mario J. and Agre, Peter and Kühlbrandt, Werner and Engel, Andreas. (2000) The 6.9-A structure of GlpF : a basis for homology modeling of the glycerol channel from Escherichia coli. Journal of structural biology, 132 (2). pp. 133-141.

Braun, T. and Philippsen, A. and Wirtz, S. and Borgnia, M. and Agre, P. and Kühlbrandt, W. and Engel, A. and Stahlberg, H.. (2000) GlpF : a structural variant of the aquaporin tetramer. In: Molecular biology and physiology of water and solute transport. New York, pp. 13-22.

Braun, Thomas and Philippsen, Ansgar and Wirtz, Sabine and Borgnia, Mario J. and Agre, Peter and Kühlbrandt, Werner and Engel, Andreas and Stahlberg, Henning. (2000) The 3.7 projection map of the glycerol facilitator GlpF: A variant of the aquaporin tetramer. EMBO Reports, 1 (2). pp. 183-189.

Braun, Thomas and McIlhinney, R. A. Jeffrey and Vergères, Guy. (2000) Myristoylation-dependent N-terminal cleavage of the myristoylated alanine-rich C kinase substrate (MARCKS) by cellular extracts. Biochimie, 82 (8). pp. 705-715.

Ulrich, Andreas and Schmitz, Arndt A. P. and Braun, Thomas and Yuan, Tao and Vogel, Hans J. and Vergères, Guy. (2000) Mapping the interface between calmodulin and MARCKS-related protein by fluorescence spectroscopy. Proceedings of the National Academy of Sciences of the United States of America, 97 (10). pp. 5191-5196.