Browse by Basel Contributors ID

2012

Plodinec, M. and Loparic, M. and Monnier, C. A. and Obermann, E. C. and Zanetti-Dallenbach, R. and Oertle, P. and Hyotyla, J. T. and Aebi, U. and Bentires-Alj, M. and Lim, R. Y. H. and Schoenenberger, C. -A.. (2012) The nanomechanical signature of breast cancer. Nature nanotechnology, Vol. 7, H. 11. pp. 757-765.

2011

Goldsbury, C. and Baxa, U. and Simon, M. N. and Steven, A. C. and Engel, A. and Wall, J. S. and Aebi, U. and Muller, S. A.. (2011) Amyloid structure and assembly : insights from scanning transmission electron microscopy. Journal of structural biology, Vol. 173, H. 11-13. pp. 1-13.

Kapinos, L. E. and Burkhard, P. and Herrmann, H. and Aebi, U. and Strelkov, S. V.. (2011) Simultaneous formation of right- and left-handed anti-parallel coiled-coil interfaces by a coil2 fragment of human lamin A. Journal of molecular biology, Vol. 408, H. 1. pp. 135-146.

2010

Nicolet, Stefan and Herrmann, Harald and Aebi, Ueli and Strelkov, Sergei V.. (2010) Atomic structure of vimentin coil 2. Journal of structural biology, Vol. 170, H. 2. pp. 369-376.

Kapinos, L. E. and Schumacher, J. and Mucke, N. and Machaidze, G. and Burkhard, P. and Aebi, U. and Strelkov, S. V. and Herrmann, H.. (2010) Characterization of the head-to-tail overlap complexes formed by human lamin A, B1 and B2 "half-minilamin" dimers. Journal of molecular biology, Vol. 396, H. 3. pp. 719-731.

Machaidze, G. and Sokoll, A. and Shimada, A. and Lustig, A. and Mazur, A. and Wittinghofer, A. and Aebi, U. and Mannherz, H. G.. (2010) Actin filament bundling and different nucleating effects of mouse Diaphanous-related formin FH2 domains on actin/ADF and actin/cofilin complexes. Journal of molecular biology, Vol. 403, H. 4. pp. 529-545.

Loparic, M. and Wirz, D. and Daniels, A. U. and Raiteri, R. and Vanlandingham, M. R. and Guex, G. and Martin, I. and Aebi, U. and Stolz, M.. (2010) Micro- and nanomechanical analysis of articular cartilage by indentation-type atomic force microscopy: validation with a gel-microfiber composite. Biophysical journal, Vol. 98. pp. 2731-2740.

Vonwil, Daniel and Schuler, Martin and Barbero, Andrea and Ströbel, Simon and Wendt, David and Textor, Marcus and Aebi, Ueli and Martin, Ivan. (2010) An RGD-restricted substrate interface is sufficient for the adhesion, growth and cartilage forming capacity of human chondrocytes. European cells & materials, Vol. 20. pp. 316-328.

Huang, N. P. and Stubenrauch, M. and Koser, J. and Taschner, N. and Aebi, U. and Stolz, M.. (2010) Towards monitoring transport of single cargos across individual nuclear pore complexes by time-lapse atomic force microscopy. Journal of structural biology, Vol. 171, H. 2. pp. 154-162.

Haas, Philippe and Then, Patrick and Wild, Andreas and Grange, Wilfried and Zorman, Sylvain and Hegner, Martin and Calame, Michel and Aebi, Ueli and Flammer, Josef and Hecht, Bert. (2010) Fast quantitative single-molecule detection at ultralow concentrations. Analytical chemistry, Vol. 82. pp. 6299-6302.

Haas, P. and Then, P. and Wild, A. and Grange, W. and Zorman, S. and Hegner, M. and Calame, M. and Aebi, U. and Flammer, J. and Hecht, B.. (2010) Quantitative Single-Molecule Detection at Ultralow Concentrations. Analytical chemistry, Vol. 82, H. 14 , S. 6299–6302.

2009

Bär, Harald and Sharma, Sarika and Kleiner, Helga and Mücke, Norbert and Zentgraf, Hanswalter and Katus, Hugo A. and Aebi, Ueli and Herrmann, Harald. (2009) Interference of amino-terminal desmin fragments with desmin filament formation. Cell motility and the cytoskeleton, Vol. 66. pp. 986-999.

Frenkiel-Krispin, D. and Mako, B. and Aebi, U. and Medalia, O.. (2009) Structural Analysis of a Metazoan Nuclear Pore Complex Reveals of Fused Concentric Ring Architecture. Journal of molecular biology, Vol. 395. pp. 578-586.

Meier, M. and Padilla, G. P. and Herrmann, H. and Wedig, T. and Hergt, M. and Patel, T. R. and Stetefeld, J. and Aebi, U. and Burkhard, P.. (2009) Vimentin Coil 1A : a molecular switch involved in the initiation of filament elongation. Journal of molecular biology, Vol. 390. pp. 245-261.

Schroeder, U. and Graff, A. and Buchmeier, S. and Rigler, P. and Tropel, D. and Jockusch, B. and Aebi, U. and Burkhard, P. and Schoenenberger, C. -A.. (2009) Peptide Nanoparticles Serve as a Powerful Platform for the Immunogenic Display of Poorly Antigenic Actin Determinants. Journal of molecular biology, Vol. 386, H. Mar 13. pp. 1368-1381.

Herrmann, H. and Strelkov, S. V. and Burkhard, P. and Aebi, U.. (2009) Intermediate filaments : primary determinants of cell architecture and plasticity. Journal of Clinical Investigation, Vol. 119, H. 7. pp. 1772-1783.

Georgakopoulou, Sofia and Möller, Dorothee and Sachs, Nadine and Herrmann, Harald and Aebi, Ueli. (2009) Near-UV circular dichroism reveals structural transitions of vimentin subunits during intermediate filament assembly. Journal of molecular biology, Vol. 386, H. 2. pp. 544-553.

Ben-Harush, K. and Wiesel, N. and Frenkiel-Krispin, D. and Moeller, D. and Soreq, E. and Aebi, U. and Herrmann, H. and Gruenbaum, Y. and Medalia, O.. (2009) The supramolecular organization of the C. elegans nuclear lamin filament. Journal of molecular biology, Vol. 386, H. 5. pp. 1392-1402.

Huang, N. -P. and Stubenrauch, M. and Koeser, J. and Strasser, P. and Taschner, N. and Aebi, U. and Stolz, M.. (2009) Towards Watching the Nuclear Pore Complex (NPC) at Work : In Situ Binding of Gold-Conjugated Cargoes to the Nucleoporins Monitored by Time-Lapse Scanning Force Microscopy. Journal of structural biology, Vol. 171, H. 2. pp. 154-162.

Kaba, S. A. and Brando, C. and Guo, Q. and Mittelholzer, C. and Raman, S. and Trope, D. and Aebi, U. and Burkhard, P. and Lanar, D. E.. (2009) A Non-Adjuvanted Polypeptide Nanoparticle Vaccine Confers Long-Lasting Protection Against Rodent Malaria. Journal of immunology, Vol. 183, no. 11. pp. 7268-7277.

Stolz, Martin and Gottardi, Riccardo and Raiteri, Roberto and Miot, Sylvie and Martin, Ivan and Imer, Raphael and Staufer, Urs and Raducanu, Aurelia and Dueggelin, Marcel and Baschong, Werner and Daniels, A. U. and Friederich, Niklaus F. and Aszodi, Attila and Aebi, Ueli. (2009) Early detection of aging cartilage and osteoarthritis in mice and patient samples using atomic force microscopy. Nature Nanotechnology, 4 (3). pp. 186-192.

Kayser, Hartmut and Mann, Karlheinz and Machaidze, Gia and Nimtz, Manfred and Ringler, Philippe and Mueller, Shirley A. and Aebi, Ueli. (2009) Isolation, characterisation and molecular imaging of a high-molecular-weight insect biliprotein, a member of the hexameric arylphorin protein family. Journal of molecular biology, Vol. 389, H. 1. pp. 74-89.

Plodinec, M. and Loparic, M. and Aebi, U.. (2009) Atomic force microscopy for Biological Imaging and Mechanical testing across Length Scales. In: Live Cell Imaging: A Laboratory Manual. New York, pp. 183-203.

2008

Rowat, A. C. and Lammerding, J. and Herrmann, H. and Aebi, U.. (2008) Towards an integrated understanding of the structure and mechanics of the cell nucleus. Bioessays, Vol. 30, H. 3. pp. 226-236.

Shumaker, D. K. and Solimando, L. and Sengupta, K. and Shimi, T. and Adam, S. A. and Grunwald, A. and Strelkov, S. V. and Aebi, U. and Cardoso, M. C. and Goldman, R. D.. (2008) The highly conserved nuclear lamin Ig-fold binds to PCNA : its role in DNA replication. The Journal of cell biology, Vol. 181, H. 2. pp. 269-280.

Wiesel, N. and Mattout, A. and Melcer, S. and Melamed-Book, N. and Herrmann, H. and Medalia, O. and Aebi, U. and Gruenbaum, Y.. (2008) Laminopathic mutations interfere with the assembly, localization, and dynamics of nuclear lamins. Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, H. 1. pp. 180-185.

Muller, S. A. and Aebi, U. and Engel, A.. (2008) What transmission electron microscopes can visualize now and in the future. Journal of structural biology, Vol. 163, H. 3. pp. 235-245.

Kreplak, L. and Herrmann, H. and Aebi, U.. (2008) Tensile properties of single desmin intermediate filaments. Biophysical journal, Vol. 94, H. 7. pp. 2790-2799.

Lim, Roderick Y. H. and Aebi, Ueli and Fahrenkrog, Birthe. (2008) Towards reconciling structure and function in the nuclear pore complex. Histochemistry and cell biology, 129 (2). pp. 105-116.

Georgakopoulou, S. and Wedig, T. and Sachs, N. and Herrmann, H. and Aebi, U.. (2008) Structural transitions during the assembly of vimentin intermediate filaments by near-UV circular dichroism. The FEBS journal, Vol. 275. p. 164.

Lim, R. Y. H. and Fahrenkrog, B. and Deng, J. and Kapinos, L. and Koeser, J. and Aebi, U.. (2008) Tinkering with a cellular nanomachine by a minimalist approach. The FEBS journal, Vol. 275. p. 7.

Kreplak, Laurent and Richter, Karsten and Aebi, Ueli and Herrmann, Harald. (2008) Electron microscopy of intermediate filaments : teaming up with atomic force and confocal laser scanning microscopy. Methods in cell biology, vol. 88. pp. 273-297.

2007

Baer, H. and Muecke, N. and Katus, H. A. and Aebi, U. and Herrmann, H.. (2007) Assembly Defects of Desmin Disease Mutants Carrying Deletions in the a-helical Rod Domain Are Rescued by Wild-Type Protein. Journal of Structural Biology, Vol. 158, H. 1. pp. 107-115.

Goldie, K. M. and Wedig, T. and Mitra, A. and Aebi, U. and Herrmann, H. and Hoenger, A.. (2007) Dissecting the 3-D Structure of vimentin Intermediate Filaments by Cro-Electron Tomography. Journal of Structural Biology, Vol. 158, H. 3. pp. 378-385.

Herrmann, H. and Baer, H. and Kreplak, L. and Strelkov, S. and Aebi, U.. (2007) Intermediate Filaments: from Cell Architecture to Nanomechanics. Nature reviews. Molecular cell biology, Vol. 8. pp. 562-573.

Kreplak, L. and Wang, H. and Aebi, U. and Kong, X. -P.. (2007) Atomic force microscopy of Mammalian urothelial surface. Journal of molecular biology, Vol. 374, H. 2. pp. 365-373.

Boerries, Melanie and Most, Patrick and Gledhill, Jonathan R. and Walker, John E. and Katus, Hugo A. and Koch, Walter J. and Aebi, Ueli and Schoenenberger, Cora-Ann. (2007) Ca2+ -dependent interaction of S100A1 with F1-ATPase leads to an increased ATP content in cardiomyocytes. Molecular and cellular biology, Vol. 27, H. 12. pp. 4365-4373.

Lim, R. Y. H. and Koser, J. and Huang, N. -P. and Schwarz-Herion, K. and Aebi, U.. (2007) Nanomechanical interactions of phenylalanine-glycine nucleoporins studied by single molecule force-volume spectroscopy. Journal of Structural Biology, Vol. 159, H. 2. pp. 277-289.

Stolz, M. and Aebi, U. and Stoffler, D.. (2007) Developing scanning probe-based nanodevices--stepping out of the laboratory into the clinic. Nanomedicine, Vol. 3, H. 1. pp. 53-62.

Lim, R. Y. H. and Fahrenkrog, B. and Koser, J. and Schwarz-Herion, K. and Deng, J. and Aebi, U.. (2007) Nanomechanical basis of selective gating by the nuclear pore complex. Science, Vol. 318, no. 5850. pp. 640-643.

Foisner, R. and Aebi, U. and Bonne, G. and Gruenbaum, Y. and Novelli, G.. (2007) Nuclear Envelope-linked Rare Human Deseases : From Molecular Pathophysiology towards Clinical Applications. Neuromuscular Disorders, Vol. 17. pp. 655-660.

Imer, R. and AQkiyama, T. and De Rooij, N. F. and Stolz, M. and Aebi, U. and Kilger, R. and Friederich, N. F. and Wirz, D. and Daniels, A. U. and Staufer, U.. (2007) In Situ Measurements of Human Articular Cartilage Stiffness by Means of a Scanning Force Microscope. Journal of physics. Conference series, Vol. 61. pp. 467-471.

Staufer, U. and Akiyama, T. and Gullo, M. R. and Han, A. and Imer, R. and de Rooij, N. F. and Aebi, U. and Engel, A. and Frederix, P. L. T. M. and Stolz, M. and Friederich, N. F. and Wirz, D.. (2007) Micro- and Nanosystems for Biology and Medicine. Microelectronic engineering, Vol. 84. pp. 1681-1684.

Parry, D. A. D. and strelkov, S. and Burkhard, P. and Aebi, U. and Herrmann, H.. (2007) Intermediate Filaments : Towards a Molecular Description of the Assembly Process and their Structure. Experimental cell research, Vol. 313, H. 10. pp. 2204-2216.

Kirmse, R. and Portet, S. and Mucke, N. and Aebi, U. and Herrmann, H. and Langowski, J.. (2007) A Quantitative Kinetic Model for the in Vitro Assembly of Intermediate Filaments from Tetrameric Vimentin. Journal of biological chemistry, Vol. 282. pp. 18563-18572.

2006

Lill, Y. and Hecht, B. and Lill, M. A. and Fahrenkrog, B. and Schwarz-Herion, K. and Paulillo, S. and Aebi, U.. (2006) Single Hepatitis-B Virus Core Capsid Binding to Individual Nuclear Pore Complexes in HeLa Cells. Biophysical journal, Vol. 91, H. 8. pp. 3123-3130.

Schaefer, T. and Maco, B. and Petgalski, E. and Tollervey, D. and Boettcher, B. and Aebi, U. and Hurt, E.. (2006) Phosphorylation by Casein KInase 1 Isoform Hrr25 and Subsequent Dephosphorylation Regulate the Structural Reorganization of the 40S Subunit During Ribosome Biogenesis. Nature, Vol. 441. pp. 651-655.

Sokolova, A. and Kreplak, L. and Svergun, D. J. and Herrmann, H. and Aebi, U. and Strelkov, S. V.. (2006) Monitoring Intermediate Filament Assembly with Small-angle X-ray Scattering Reveals the Molecular Architecture of Assembly Intermediates. Proceedings of the National Academy of Sciences of the United States of America, Vol. 103. pp. 16206-16211.

Kreplak, L. and Aebi, U.. (2006) From the polymorphism of amyloid fibrils to their assembly mechanism and cytotoxicity. Advances in Protein Chemistry, Vol. 73. pp. 217-233.

Guzman, C. and Jeney, S. and Kreplak, L. and Kasas, S. and Kulik, A. J. and Aebi, U. and Forro, L.. (2006) Exploring the Mechanical Properties of Single Vimentin Intermediate Filaments by Atomic Force Microscopy. Journal of molecular biology, Vol. 360. pp. 623-630.

Lim, Roderick Y. H. and Huang, Ning-Ping and Köser, Joachim and Deng, Jie and Lau, K. H. Aaron and Schwarz-Herion, Kyrill and Fahrenkrog, Birthe and Aebi, Ueli. (2006) Flexible phenylalanine-glycine nucleoporins as entropic barriers to nucleocytoplasmic transport. Proceedings of the National Academy of Sciences of the United States of America, 103 (25). pp. 9512-9517.

Lim, R. Y. H. and Aebi, U. and Stoffler, D.. (2006) From the trap to the basket : getting to the bottom of the nuclear pore complex. Chromosoma, Vol. 115, H. 1. pp. 15-26.

Jockusch, B. M. and Schoenenberger, C. A. and Stetefeld, J. and Aebi, U.. (2006) Tracking down the different forms of nuclear actin. Trends in cell biology, Vol. 16, H. 8. pp. 391-396.

Raman, S. and Machaidze, G. and Lustig, A. and Aebi, U. and Burkhard, P.. (2006) Structure-based design of peptides that self-assemble into regular polyhedral nanoparticles. Nanomedicine, Vol. 2, H. 2. pp. 95-102.

Foeger, N. and Wiesel, N. and Muecke, N. and Lotsch, D. and Kreplak, L. and Aebi, U. and Gruenbaum, Y. and Herrmann, H.. (2006) Solubility Properties and Specific Assembly Pathways of the B-type Lamin from Caenorhabditis elegans. Journal of structural biology, Vol. 155, H. 2. pp. 340-350.

Imer, R. and Akiyama, T. and De Rooij, N. F. and Stolz, M. and Aebi, U. and Friederich, N. F. and Koenig, U. and Wirz, D. and Daniels, A. U. and Staufer, U.. (2006) Development of an Atomic Force Microscope for Arthoscopic Knee Cartilage Inspection. Japanese journal of applied physics. Part 1, Regular papers, short notes & review papers, Vol. 45. pp. 2319-2323.

Von Bergen, M. and Barghorn, S. and Mueller, S. S. and Pickhardt, M. and Biernat, J. and Mandelkow, E. -M. and Davis, P. and Aebi, U. and Mandelkow, E.. (2006) The core of tau-paired helical filaments studied by scanning transmission electron microscopy and limited proteolysis. Biochemistry, Vol. 45, H. 20. pp. 6446-6457.

Baer, Harald and Muecke, Norbert and Ringler, Philippe and Müller, Shirley A. and Kreplak, Laurent and Katus, Hugo A. and Aebi, Ueli and Herrmann, Harald. (2006) Impact of disease mutations on the desmin filament assembly process. Journal of molecular biology, Vol. 360, H. 5. pp. 1031-1042.

Baschong, W. and Aebi, U.. (2006) Negative Staining. In: Cell Biology: A Laboratory Hand Book. Amsterdam, pp. 233-240.

Aebi, U. and Baschong, W.. (2006) Glycerol Spraying/Low Angle Rotary Metal Shadowing. In: Cell Biology: A Laboratory Hand Book. Amsterdam, pp. 242-246.

Baschong, W. and Landmann, L.. (2006) Fluorescence Microscopy. In: Cell Biology: A Laboratory Hand Book. Amsterdam, pp. 5-17.

Fahrenkrog, B. and Aebi, U.. (2006) The Nuclear Pore Complex. In: Encyclopedic Reference of Genomics and Proteomics.

Maco, Bohumil and Fahrenkrog, Birthe and Huang, Ning-Ping and Aebi, Ueli. (2006) Nuclear pore complex structure and plasticity revealed by electron and atomic force microscopy. Methods in Molecular Biology, Vol. 322. pp. 273-288.