Items where Division is "03 Faculty of Medicine > Departement Biomedizin > Division of Anatomy > Developmental Genetics (Zeller/Zuniga)"

2022

Malkmus, Jonas. Cis-Regulation of Gremlin1 Expression during Mouse Limb Bud Development and its Diversification during Vertebrate Evolution. 2022, Doctoral Thesis, University of Basel, Faculty of Science.

2020

Girdžiušaitė, Aušra. TBX3 and HAND2 Controlled Gene Regulatory Networks in Establishment of Axis Polarity in Mouse Limb Buds. 2020, Doctoral Thesis, University of Basel, Faculty of Science.

Ramos Martins, Laurène. The Gremlin1 cis-regulatory landscape: a paradigm to study enhancer cooperation in regulation of transcription dynamics. 2020, Doctoral Thesis, University of Basel, Faculty of Science.

2017

Gamart, Julie. SMAD4: a multifunctional regulator of limb bud initiation and outgrowth. 2017, Doctoral Thesis, University of Basel, Faculty of Science.

Laurent, Frédéric and Girdziusaite, Ausra and Gamart, Julie and Barozzi, Iros and Osterwalder, Marco and Akiyama, Jennifer A. and Lincoln, Joy and Lopez-Rios, Javier and Visel, Axel and Zuniga, Aimée and Zeller, Rolf. (2017) HAND2 Target Gene Regulatory Networks Control Atrioventricular Canal and Cardiac Valve Development. Cell Reports, 19 (8). pp. 1602-1613.

Stüdle, Chiara. Towards osteochondral regeneration with human bone marrow derived mesenchymal stromal cells in a functionalized hydrogel system. 2017, Doctoral Thesis, University of Basel, Faculty of Science.

2016

Jaiswal, Sumit. Characterization of early mouse mesenchymal stem/progenitor cells for generating cartilage and study their role in endochondral ossification. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

2015

McGrath, J. C. and McLachlan, E. M. and Zeller, R.. (2015) Transparency in Research involving Animals: The Basel Declaration and new principles for reporting research in BJP manuscripts. British Journal of Pharmacology (BJP), 172 (10). pp. 2427-2432.

Schmitz-Rohmer, D. and Probst, S. and Yang, Z. Z. and Laurent, F. and Stadler, M. B. and Zuniga, A. and Zeller, R. and Hynx, D. and Hemmings, B. A. and Hergovich, A.. (2015) NDR Kinases Are Essential for Somitogenesis and Cardiac Looping during Mouse Embryonic Development. PLoS One, 10 (8). e0136566.

Vaillant, C. and Valdivieso, P. and Nuciforo, S. and Kool, M. and Schwarzentruber-Schauerte, A. and Mereau, H. and Cabuy, E. and Lobrinus, J. A. and Pfister, S. and Zuniga, A. and Frank, S. and Zeller, R.. (2015) Serpine2/PN-1 Is Required for Proliferative Expansion of Pre-Neoplastic Lesions and Malignant Progression to Medulloblastoma. PLoS One, 10 (4). e0124870.

Zuniga, A.. (2015) Next generation limb development and evolution: old questions, new perspectives. Development, 142 (22). pp. 3810-3820.

2014

Laurent, Frédéric. Identification of cis-regulatory modules in mouse embryonic limb buds and heart using endogenous epitope-tagged transcription factors. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Lopez-Rios, Javier and Duchesne, Amandine and Speziale, Dario and Andrey, Guillaume and Peterson, Kevin A. and Germann, Philipp and Ünal, Erkan and Liu, Jing and Floriot, Sandrine and Barbey, Sarah and Gallard, Yves and Müller-Gerbl, Magdalena and Courtney, Andrew D. and Klopp, Christophe and Rodriguez, Sabrina and Ivanek, Robert and Beisel, Christian and Wicking, Carol and Iber, Dagmar and Robert, Benoit and McMahon, Andrew P. and Duboule, Denis and Zeller, Rolf. (2014) Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs. Nature, 511 (7507). pp. 46-51.

Osterwalder, Marco and Speziale, Dario and Shoukry, Malak and Mohan, Rajiv and Ivanek, Robert and Kohler, Manuel and Beisel, Christian and Wen, Xiaohui and Scales, Suzie J. and Christoffels, Vincent M. and Visel, Axel and Lopez-Rios, Javier and Zeller, Rolf. (2014) HAND2 targets define a network of transcriptional regulators that compartmentalize the early limb bud mesenchyme. Developmental Cell, 31 (3). pp. 345-357.

Pignatti, Emanuele. Targeting canonical BMP signaling : SMAD4 in limb patterning and differentiation. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Pignatti, Emanuele and Zeller, Rolf and Zuniga, Aimée. (2014) To BMP or not to BMP during vertebrate limb bud development. Seminars in Cell and Developmental Biology, 32. pp. 119-127.

Tonnarelli, Beatrice and Centola, Matteo and Barbero, Andrea and Zeller, Rolf and Martin, Ivan. (2014) Re-engineering development to instruct tissue regeneration. In: Mechanisms of regeneration, 108. San Diego, pp. 319-338.

Zuniga, Aimée and Zeller, Rolf. (2014) Development. In Turing's hands--the making of digits. Science, 345 (6196). pp. 516-517.

2013

Benazet, J. D. and Zeller, R.. (2013) Dual requirement of ectodermal Smad4 during AER formation and termination of feedback signaling in mouse limb buds. Genesis, Vol. 51, H. 9. pp. 660-666.

Probst, S. and Zeller, R. and Zuniga, A.. (2013) The hedgehog target Vlk genetically interacts with Gli3 to regulate chondrocyte differentiation during mouse long bone development. Differentiation, Vol. 85, no. 4-5. pp. 121-130.

2012

Benazet, J. D. and Pignatti, E. and Nugent, A. and Unal, E. and Laurent, F. and Zeller, R.. (2012) Smad4 is required to induce digit ray primordia and to initiate the aggregation and differentiation of chondrogenic progenitors in mouse limb buds. Development, Vol. 139, H. 22. pp. 4250-4260.

Iber, D. and Zeller, R.. (2012) Making sense-data-based simulations of vertebrate limb development. Current opinion in genetics & development, Vol. 22, H. 6. pp. 570-577.

Itou, J. and Kawakami, H. and Quach, T. and Osterwalder, M. and Evans, S. M. and Zeller, R. and Kawakami, Y.. (2012) Islet1 regulates establishment of the posterior hindlimb field upstream of the Hand2-Shh morphoregulatory gene network in mouse embryos. Development, Vol. 139, H. 9. pp. 1620-1629.

Lopez-Rios, J. and Speziale, D. and Robay, D. and Scotti, M. and Osterwalder, M. and Nusspaumer, G. and Galli, A. and Hollander, G. A. and Kmita, M. and Zeller, R.. (2012) GLI3 constrains digit number by controlling both progenitor proliferation and BMP-dependent exit to chondrogenesis. Developmental cell, Vol. 22, H. 4. pp. 837-848.

Osterwalder, Marco. Genome-wide identification of Hand2 target regions in mouse embryos using dRMCE, a new genetic tool. 2012, Doctoral Thesis, University of Basel, Faculty of Science.

Probst, Simone. Coordination of limb bud development : the role of SHH in PD limb bud patterning. 2012, Doctoral Thesis, University of Basel, Faculty of Science.

Zuniga, A. and Laurent, F. and Lopez-Rios, J. and Klasen, C. and Matt, N. and Zeller, R.. (2012) Conserved cis-regulatory regions in a large genomic landscape control SHH and BMP-regulated Gremlin1 expression in mouse limb buds. BMC developmental biology, Vol. 12 , 23.

Zuniga, A. and Zeller, R. and Probst, S.. (2012) The molecular basis of human congenital limb malformations. Wiley interdisciplinary reviews. Developmental Biology, Vol. 1, no. 6. pp. 803-822.

2011

Goncalves, A. and Zeller, R.. (2011) Genetic analysis reveals an unexpected role of BMP7 in initiation of ureteric bud outgrowth in mouse embryos. PLoS ONE, Vol. 6, H. 4, e19370.

Probst, S. and Kraemer, C. and Demougin, P. and Sheth, R. and Martin, G. R. and Shiratori, H. and Hamada, H. and Iber, D. and Zeller, R. and Zuniga, A.. (2011) SHH propagates distal limb bud development by enhancing CYP26B1-mediated retinoic acid clearance via AER-FGF signalling. Development, Vol. 138, H. 10. pp. 1913-1923.

2010

Fujimori, Sayumi and Novak, Hermann and Weissenböck, Martina and Jussila, Maria and Gonçalves, Alexandre and Zeller, Rolf and Galloway, Jenna and Thesleff, Irma and Hartmann, Christine. (2010) Wnt/ -catenin signaling in the dental mesenchyme regulates incisor development by regulating Bmp4. Developmental biology, Vol. 348. pp. 97-106.

Galli, Antonella and Robay, Dimitri and Osterwalder, Marco and Bao, Xiaozhong and Bénazet, Jean-Denis and Tariq, Muhammad and Paro, Renato and Mackem, Susan and Zeller, Rolf. (2010) Distinct roles of Hand2 in initiating polarity and posterior Shh expression during the onset of mouse limb bud development. PLoS Genetics, Vol. 6, H. 4 , e1000901.

Gonçalves, Alexandre. Epithelial-mesenchymal feedback signalling during vertebrate organogenesis : genetic analysis of BMP-Gremlin1 antagonistic interactions. 2010, Doctoral Thesis, University of Basel, Faculty of Science.

Osterwalder, Marco and Galli, Antonella and Rosen, Barry and Skarnes, William C. and Zeller, Rolf and Lopez-Rios, Javier. (2010) Dual RMCE for efficient re-engineering of mouse mutant alleles. Nature methods, Vol. 7, H. 11. pp. 893-895.

Scotti, Celeste and Tonnarelli, Beatrice and Papadimitropoulos, Adam and Scherberich, Arnaud and Schaeren, Stefan and Schauerte, Alexandra and Lopez-Rios, Javier and Zeller, Rolf and Barbero, Andrea and Martin, Ivan. (2010) Recapitulation of endochondral bone formation using human adult mesenchymal stem cells as a paradigm for developmental engineering. Proceedings of the National Academy of Sciences, 107 (16). pp. 7251-7256.

Zeller, Rolf. (2010) The temporal dynamics of vertebrate limb development, teratogenesis and evolution. Current opinion in genetics & development, Vol. 20, H. 4. pp. 384-390.

2009

Affolter, M. and Zeller, R. and Caussinus, E.. (2009) Tissue remodelling through branching morphogenesis. Nature reviews. Molecular cell biology, Vol. 10, H. 12. pp. 831-842.

Affolter, Markus and Zeller, Rolf. (2009) From cells to organs : new insight into organ morphogenesis. Current Opinion in Genetics & Development, 19 (5). pp. 421-423.

Bénazet, Jean-Denis and Bischofberger, Mirko and Tiecke, Eva and Gonçalves, Alexandre and Martin, James F. and Zuniga, Aimée and Naef, Felix and Zeller, Rolf. (2009) A self-regulatory system of interlinked signaling feedback loops controls mouse limb patterning. Science, Vol. 323. pp. 1050-1053.

Bénazet, Jean-Denis and Zeller, Rolf. (2009) Vertebrate limb development : moving from classical morphogen gradients to an integrated 4-dimensional patterning system. Cold Spring Harbor perspectives in biology, Vol. 1 , a001339.

Zeller, Rolf and López-Ríos, Javier and Zuniga, Aimée. (2009) Vertebrate limb bud development : moving towards integrative analysis of organogenesis. Nature reviews. Genetics, Vol. 10, no. 12. pp. 845-858.

2008

Fischer, Andrew H. and Jacobson, Kenneth A. and Rose, Jack and Zeller, Rolf. (2008) Cryosectioning tissues. CSH protocols, Vol. 2008, pdb.prot4991.

Fischer, Andrew H. and Jacobson, Kenneth A. and Rose, Jack and Zeller, Rolf. (2008) Cutting sections of paraffin-embedded tissues. CSH protocols, Vol. 2008, pdb.prot4987.

Fischer, Andrew H. and Jacobson, Kenneth A. and Rose, Jack and Zeller, Rolf. (2008) Decalcifying tissues for paraffin embedding. CSH protocols, Vol. 2008, pdb.prot4990.

Fischer, Andrew H. and Jacobson, Kenneth A. and Rose, Jack and Zeller, Rolf. (2008) Fixation and permeabilization of cells and tissues. CSH protocols, Vol. 2008, pdb.top36.

Fischer, Andrew H. and Jacobson, Kenneth A. and Rose, Jack and Zeller, Rolf. (2008) Hematoxylin and eosin staining of tissue and cell sections. CSH protocols, Vol. 2008, pdb.prot4986.

Fischer, Andrew H. and Jacobson, Kenneth A. and Rose, Jack and Zeller, Rolf. (2008) Media for mounting fixed cells on microscope slides. Cold Spring Harbor protocols, Vol. 2008, pdb.ip52.

Fischer, Andrew H. and Jacobson, Kenneth A. and Rose, Jack and Zeller, Rolf. (2008) Mounting live cells attached to coverslips for microscopy. CSH protocols, Vol. 2008, pdb.prot4927.

Fischer, Andrew H. and Jacobson, Kenneth A. and Rose, Jack and Zeller, Rolf. (2008) Paraffin embedding tissue samples for sectioning. CSH protocols, Vol. 2008, pdb.prot4989.

Fischer, Andrew H. and Jacobson, Kenneth A. and Rose, Jack and Zeller, Rolf. (2008) Preparation of slides and coverslips for microscopy. CSH protocols, Vol. 2008, pdb.prot4988.