Items where Division is "09 Associated Institutions > Swiss Tropical and Public Health Institute (Swiss TPH) > Department of Epidemiology and Public Health (EPH) > Disease Modelling > Disease Modelling and Intervention Dynamics (Penny)"

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Kelly, S. L. and Shattock, A. J. and Ragettli, M. S. and Vienneau, D. and Vicedo-Cabrera, A. M. and de Hoogh, K.. (2023) The air and viruses we breathe: assessing the effect the PM2.5 air pollutant has on the burden of COVID-19. Atmosphere, 14 (5). p. 887.

Kelly, S. L. and Walsh, T. and Delport, D. and Ten Brink, D. and Martin-Hughes, R. and Homer, C. S. and Butler, J. and Adedeji, O. and De Beni, D. and Maurizio, F. and Friedman, H. S. and Di Marco, D. and Tobar, F. and de la Corte Molina, M. P. and Richards, A. S. and Scott, N.. (2023) Health and economic benefits of achieving contraceptive and maternal health targets in small island developing states in the Pacific and Caribbean. BMJ Glob Health, 8 (2). e010018.

Nekkab, N. and Malinga, J. and Braunack-Mayer, L. and Kelly, S. L. and Miller, R. S. and Penny, M. A.. (2023) Modelling to inform next-generation medical interventions for malaria prevention and treatment. Commun Med (Lond), 3. p. 41.

Nekkab, N. and Obadia, T. and Monteiro, W. M. and Lacerda, M. V. G. and White, M. and Mueller, I.. (2023) Accelerating towards P. vivax elimination with a novel serological test-and-treat strategy: a modelling case study in Brazil. Lancet Reg Health Am, 22. p. 100511.

Ali, A. M. and Gausi, K. and Jongo, S. A. and Kassim, K. R. and Mkindi, C. and Simon, B. and Mtoro, A. T. and Juma, O. A. and Lweno, O. N. and Gwandu, C. H. and Bakari, B. M. and Mbaga, T. A. and Milando, F. A. and Hamad, A. and Shekalaghe, S. A. and Abdulla, S. and Denti, P. and Penny, M. A.. (2022) Population pharmacokinetics of antimalarial naphthoquine in combination with artemisinin in Tanzanian children and adults: dose optimization. Antimicrob Agents Chemother, 66 (5). e0169621.

Borlase, A. and Le Rütte, E. A. and Castaño, S. and Blok, D. J. and Toor, J. and Giardina, F. and Davis, E. L. and Modelling Consortium, N. T. D.. (2022) Evaluating and mitigating the potential indirect effect of COVID-19 on control programmes for seven neglected tropical diseases: a modelling study. Lancet Glob Health, 10 (11). e1600-e1611.

Golumbeanu, M. and Yang, G. J. and Camponovo, F. and Stuckey, E. M. and Hamon, N. and Mondy, M. and Rees, S. and Chitnis, N. and Cameron, E. and Penny, M. A.. (2022) Leveraging mathematical models of disease dynamics and machine learning to improve development of novel malaria interventions. Infect Dis Poverty, 11. p. 61.

Kokaliaris, C. and Garba, A. and Matuska, M. and Bronzan, R. N. and Colley, D. G. and Dorkenoo, A. M. and Ekpo, U. F. and Fleming, F. M. and French, M. D. and Kabore, A. and Mbonigaba, J. B. and Midzi, N. and Mwinzi, P. N. M. and N'Goran, E. K. and Polo, M. R. and Sacko, M. and Tchuem Tchuenté, L. A. and Tukahebwa, E. M. and Uvon, P. A. and Yang, G. and Wiesner, L. and Zhang, Y. and Utzinger, J. and Vounatsou, P.. (2022) Effect of preventive chemotherapy with praziquantel on schistosomiasis among school-aged children in sub-Saharan Africa: a spatiotemporal modelling study. The Lancet infectious diseases, 22 (1). pp. 136-149.

Lee, T. E. and Bonhoeffer, S. and Penny, M. A.. (2022) The competition dynamics of resistant and sensitive infections. Results Phys, 34. p. 105181.

Masserey, T. and Lee, T. and Golumbeanu, M. and Shattock, A. J. and Kelly, S. L. and Hastings, I. M. and Penny, M. A.. (2022) The influence of biological, epidemiological, and treatment factors on the establishment and spread of drug-resistant Plasmodium falciparum. eLife, 11. e7763.

Masserey, T. and Penny, M. A. and Lee, T. E.. (2022) Patient variability in the blood-stage dynamics of Plasmodium falciparum captured by clustering historical data. Malar J, 21. p. 300.

Nekkab, N. and Penny, M. A.. (2022) Accelerated development of malaria monoclonal antibodies. Cell Rep Med, 3 (10). p. 100786.

Obadia, T. and Nekkab, N. and Robinson, L. J. and Drakeley, C. and Mueller, I. and White, M. T.. (2022) Developing sero-diagnostic tests to facilitate Plasmodium vivax serological test-and-treat approaches: modeling the balance between public health impact and overtreatment. BMC Med, 20. p. 98.

Smit, C. and Sen, S. and von Dach, E. and Karmime, A. and Lescuyer, P. and Tonoli, D. and Bielicki, J. and Huttner, A. and Pfister, M.. (2022) Steering away from current amoxicillin dose reductions in hospitalized patients with impaired kidney function to avoid subtherapeutic drug exposure. Antibiotics (Basel), 11 (9). p. 1190.

Watson, O. J. and Gao, B. and Nguyen, T. D. and Tran, T. N. and Penny, M. A. and Smith, D. L. and Okell, L. and Aguas, R. and Boni, M. F.. (2022) Pre-existing partner-drug resistance to artemisinin combination therapies facilitates the emergence and spread of artemisinin resistance: a consensus modelling study. Lancet Microbe, 3 (9). e701-e710.

Yang, G. J. and Shang, L. Y. and Zhou, X. N. and Lee, T. E. and Bi, B. and White, M. and Smith, T. A. and Penny, M. A.. (2022) The empirical support for the radical cure strategy for eliminating Plasmodium vivax in China. BMC Med, 20. p. 17.

Burgert, L. and Zaloumis, S. and Dini, S. and Marquart, L. and Cao, P. and Cherkaoui, M. and Gobeau, N. and McCarthy, J. and Simpson, J. A. and Möhrle, J. J. and Penny, M. A.. (2021) Parasite-host dynamics throughout antimalarial drug development stages complicate the translation of parasite clearance. Antimicrobial agents and chemotherapy, 65 (4). e01539-20.

Camponovo, F. and Lee, T. E. and Russell, J. R. and Burgert, L. and Gerardin, J. and Penny, M. A.. (2021) Mechanistic within-host models of the asexual; Plasmodium falciparum; infection: a review and analytical assessment. Malar J, 20. p. 309.

Coffeng, L. E. and Le Rutte, E. A. and Munoz, J. and Adams, E. and de Vlas, S. J.. (2021) Antibody and antigen prevalence as indicators of ongoing transmission or elimination of visceral leishmaniasis: a modelling study. Clinical infectious diseases, 72 (Suppl. 3). S180-S187.

Galactionova, K. and Smith, T. A. and Penny, M. A.. (2021) Insights from modelling malaria vaccines for policy decisions: the focus on RTS,S. Malar J, 20. p. 439.

Kaye, P. M. and Mohan, S. and Mantel, C. and Malhame, M. and Revill, P. and Le Rutte, E. and Parkash, V. and Layton, A. M. and Lacey, C. J. N. and Malvolti, S.. (2021) Overcoming roadblocks in the development of vaccines for leishmaniasis. Expert Rev Vaccines, 20 (11). pp. 1419-1430.

Le Rutte, E. A. and Coffeng, L. E. and Munoz, J. and de Vlas, S. J.. (2021) Modelling the impact of COVID-19-related programme interruptions on visceral leishmaniasis in India. Trans R Soc Trop Med Hyg, 115 (3). pp. 229-235.

Malvolti, S. and Malhame, M. and Mantel, C. F. and Le Rütte, E. A. and Kaye, P. M.. (2021) Human leishmaniasis vaccines: use cases, target population and potential global demand. PLoS Negl Trop Dis, 15 (9). e0009742.

Reiker, T. and Golumbeanu, M. and Shattock, A. and Burgert, L. and Smith, T. A. and Filippi, S. and Cameron, E. and Penny, M. A.. (2021) Emulator-based Bayesian optimization for efficient multi-objective calibration of an individual-based model of malaria. Nat Commun, 12. p. 7212.

Shattock, A. J. and Le Rütte, E. A. and Dünner, R. P. and Sen, S. and Kelly, S. L. and Chitnis, N. and Penny, M. A.. (2021) Impact of vaccination and non-pharmaceutical interventions on SARS-CoV-2 dynamics in Switzerland. Epidemics, 38. p. 100535.

Stader, Felix and Courlet, Perrine and Kinvig, Hannah and Penny, Melissa A. and Decosterd, Laurent A. and Battegay, Manuel and Siccardi, Marco and Marzolini, Catia. (2021) Clinical Data Combined With Modeling and Simulation Indicate Unchanged Drug-Drug Interaction Magnitudes in the Elderly. Clinical Pharmacology & Therapeutics, 109 (2). pp. 471-484.

Toor, J. and Adams, E. R. and Aliee, M. and Amoah, B. and Anderson, R. M. and Ayabina, D. and Bailey, R. and Basanez, M. G. and Blok, D. J. and Blumberg, S. and Borlase, A. and Rivera, R. C. and Castaño, M. S. and Chitnis, N. and Coffeng, L. E. and Crump, R. E. and Das, A. and Davis, C. N. and Davis, E. L. and Deiner, M. S. and Diggle, P. J. and Fronterre, C. and Giardina, F. and Giorgi, E. and Graham, M. and Hamley, J. I. D. and Huang, C. I. and Kura, K. and Lietman, T. M. and Lucas, T. C. D. and Malizia, V. and Medley, G. F. and Meeyai, A. and Michael, E. and Porco, T. C. and Prada, J. M. and Rock, K. S. and Le Rutte, E. A. and Smith, M. E. and Spencer, S. E. F. and Stolk, W. A. and Touloupou, P. and Vasconcelos, A. and Vegvari, C. and de Vlas, S. J. and Walker, M. and Hollingsworth, T. D.. (2021) Predicted impact of COVID-19 on neglected tropical disease programs and the opportunity for innovation. Clinical infectious diseases, 72 (8). pp. 1463-1466.

Zheng, J. and Shi, B. and Xia, S. and Yang, G. and Zhou, X. N.. (2021) Spatial patterns of Plasmodium vivax transmission explored by multivariate auto-regressive state-space modelling - a case study in Baoshan prefecture in southern China. Geospat Health, 16. p. 879.

Burgert, Lydia and Rottmann, Matthias and Wittlin, Sergio and Gobeau, Nathalie and Krause, Andreas and Dingemanse, Jasper and Möhrle, Jörg J. and Penny, Melissa A.. (2020) Ensemble modeling highlights importance of understanding parasite-host behavior in preclinical antimalarial drug development. Scientific reports, 10. p. 4410.

Camponovo, Flavia and Campo, Joseph J. and Le, Timothy Q. and Oberai, Amit and Hung, Christopher and Pablo, Jozelyn V. and Teng, Andy A. and Liang, Xiaowu and Sim, B. Kim Lee and Jongo, Said and Abdulla, Salim and Tanner, Marcel and Hoffman, Stephen L. and Daubenberger, Claudia and Penny, Melissa A.. (2020) Proteome-wide analysis of a malaria vaccine study reveals personalized humoral immune profiles in Tanzanian adults. eLife, 9. e53080.

De Leo, G. A. and Stensgaard, A. S. and Sokolow, S. H. and N'Goran, E. K. and Chamberlin, A. J. and Yang, G. and Utzinger, J.. (2020) Schistosomiasis and climate change. BMJ, 371. m4324.

Galactionova, Katya and Velarde, Mar and Silumbe, Kafula and Miller, John and McDonnell, Anthony and Aguas, Ricardo and Smith, Thomas A. and Penny, Melissa A.. (2020) Costing malaria interventions from pilots to elimination programmes. Malaria journal, 19. p. 332.

Lee, T. E. and Roberts, D. L.. (2020) Moving beyond simple descriptive statistics in the analysis of online wildlife trade: an example from clustering and ordination. Trop Conserv Sci, 12. pp. 1-10.

Wan, Hui and Cui, Jing-An and Yang, Guo-Jing. (2020) Risk estimation and prediction of the transmission of coronavirus disease-2019 (COVID-19) in the mainland of China excluding Hubei province. Infectious diseases of poverty, 9. p. 116.

Camponovo, Flavia and Ockenhouse, Chris F. and Lee, Cynthia and Penny, Melissa A.. (2019) Mass campaigns combining antimalarial drugs and anti-infective vaccines as seasonal interventions for malaria control, elimination and prevention of resurgence: a modelling study. BMC infectious diseases, 19. p. 920.

Lee, Tamsin E. and Penny, Melissa A.. (2019) Identifying key factors of the transmission dynamics of drug-resistant malaria. Journal of theoretical biology, 462. pp. 210-220.

Masserey Spicher, Virginie and Weiss, Mitchell G.. (2019) Policy and socio-cultural differences between cantons in Switzerland with high and low adolescent vaccination coverage for hepatitis B and HPV. Vaccine, 37 (52). pp. 7539-7546.

Meister, Isabel and Assawasuwannakit, Piyanan and Vanobberghen, Fiona and Penny, Melissa A. and Odermatt, Peter and Sayasone, Somphou and Huwyler, Jörg and Tarning, Joel and Keiser, Jennifer. (2019) Pooled population pharmacokinetic analysis of tribendimidine for the treatment of Opisthorchis viverrini infections. Antimicrobial Agents and Chemotherapy, 63 (4). e01391-18.

Smith, T. A. and Pemberton-Ross , P. and Penny, M. A. and Chitnis, N.. (2019) Resurgence of malaria infection after mass treatment: a simulation study. Malaria journal, 18. p. 409.

Stader, Felix and Penny, Melissa A. and Siccardi, Marco and Marzolini, Catia. (2019) A comprehensive framework for physiologically based pharmacokinetic modelling in Matlab. CPT: Pharmacometrics and Systems Pharmacology, 8 (7). pp. 444-459.

Ali, Ali Mohamed and Penny, Melissa A. and Smith, Thomas A. and Workman, Lesley and Sasi, Philip and Adjei, George O. and Aweeka, Francesca and Kiechel, Jean-René and Jullien, Vincent and Rijken, Marcus J. and McGready, Rose and Mwesigwa, Julia and Kristensen, Kim and Stepniewska, Kasia and Tarning, Joel and Barnes, Karen I. and Denti, Paolo and Wwarn Amodiaquine PK Study Group, . (2018) Population pharmacokinetics of the antimalarial amodiaquine: a pooled analysis to optimize dosing. Antimicrobial agents and chemotherapy, 62 (10). e02193-17.

Laager, Mirjam and Mbilo, Céline and Madaye, Enos Abdelaziz and Naminou, Abakar and Léchenne, Monique and Tschopp, Aurélie and Naïssengar, Service Kemdongarti and Smieszek, Timo and Zinsstag, Jakob and Chitnis, Nakul. (2018) The importance of dog population contact network structures in rabies transmission. PLoS Neglected Tropical Diseases, 12 (8). e0006680.

Shi, Benyun and Zhan, Xiao-Ming and Zheng, Jin-Xin and Qiu, Hongjun and Liang, Dan and Ye, Yan-Ming and Yang, Guo-Jing and Liu, Yang and Liu, Jiming. (2018) Identifying key bird species and geographical hotspots of avian influenza A (H7N9) virus in China. Infectious Diseases of Poverty, 7 (1). p. 97.

Stader, Felix and Kinvig, Hannah and Battegay, Manuel and Khoo, Saye and Owen, Andrew and Siccardi, Marco and Marzolini, Catia. (2018) Analysis of clinical drug-drug interaction data to predict uncharacterized interaction magnitudes between antiretroviral drugs and co-medications. Antimicrobial agents and chemotherapy, 62 (7). e00717-18.

Yang, Guo-Jing and Bergquist, Robert. (2018) Potential impact of climate change on schistosomiasis : a global assessment attempt. Tropical medicine and infectious disease, 3 (4). E117.

Jin-Xin, Zheng and Lu, Liu and Yun, Feng and Guo-Jing, Yang. (2017) A review of spatial epidemiology with malaria surveillance and control in China. Zhongguo xue xi chong bing fang zhi za zhi = Chinese journal of schistosomiasis control, 29 (5). pp. 651-655.

Book Section

Chitnis, N. and Zinsstag, J. and Fuhrimann, S. and Hattendorf, J.. (2021) Animal-human transmission models. In: One Health: the theory and practice of integrated health approaches. Wallingford, pp. 145-156.


Reiker, Theresa. Model development, data, and public health: A combined approach against malaria. 2023, Doctoral Thesis, University of Basel, Associated Institution, Faculty of Science.

Burgert, Lydia. Modelling to guide the development of pharmaceutical interventions against malaria. 2020, Doctoral Thesis, University of Basel, Associated Institution, Faculty of Science.

Stader, Felix. Physiologically based pharmacokinetic modelling to investigate the impact of aging on drug pharmacokinetics and drug-drug interaction magnitudes in aging people living with HIV. 2020, Doctoral Thesis, University of Basel, Faculty of Science.

This list was generated on Sun Sep 24 03:57:54 2023 CEST.