Items where Division is "03 Faculty of Medicine > Departement Biomedizin > Department of Biomedicine, University Hospital Basel > Applied Microbiology Research (Egli)"

2022

Cuénod, Aline. Finding the Peak in the Mass-Stack: Rapid and Accurate Detection of Virulence and Resistance in Clinical Routine Diagnostics with MALDI-TOF Mass Spectrometry. 2022, Doctoral Thesis, University of Basel, Faculty of Science.

2021

Mari, Alfredo and Roloff, Tim and Stange, Madlen and Søgaard, Kirstine K. and Asllanaj, Erblin and Tauriello, Gerardo and Alexander, Leila Tamara and Schweitzer, Michael and Leuzinger, Karoline and Gensch, Alexander and Martinez, Aurélien E. and Bielicki, Julia and Pargger, Hans and Siegemund, Martin and Nickel, Christian H. and Bingisser, Roland and Osthoff, Michael and Bassetti, Stefano and Sendi, Parham and Battegay, Manuel and Marzolini, Catia and Seth-Smith, Helena M. B. and Schwede, Torsten and Hirsch, Hans H. and Egli, Adrian. (2021) Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance. Microorganisms, 9 (5). p. 1094.

2019

Egli, Adrian and Saalfrank, Claudia and Goldman, Nina and Brunner, Myrta and Hollenstein, Yvonne and Vogel, Thomas and Augustin, Noémie and Wüthrich, Daniel and Seth-Smith, Helena M. B. and Roth, Elisa and Syedbasha, Mohammedyaseen and Mueller, Nicola F. and Vogt, Dominik and Bauer, Jan and Amar-Sliwa, Nadezhda and Meinel, Dominik M. and Dubuis, Olivier and Naegele, Michael and Tschudin-Sutter, Sarah and Buser, Andreas and Nickel, Christian H. and Zeller, Andreas and Ritz, Nicole and Battegay, Manuel and Stadler, Tanja and Schneider-Sliwa, Rita. (2019) Identification of influenza urban transmission patterns by geographical, epidemiological and whole genome sequencing data: protocol for an observational study. BMJ Open, 9 (8). e030913.

2016

Degenhardt, Franziska and Heinemann, Barbara and Strohmaier, Jana and Pfohl, Marvin A. and Giegling, Ina and Hofmann, Andrea and Ludwig, Kerstin U. and Witt, Stephanie H. and Ludwig, Michael and Forstner, Andreas J. and Albus, Margot and Schwab, Sibylle G. and Borrmann-Hassenbach, Margitta and Lennertz, Leonard and Wagner, Michael and Hoffmann, Per and Rujescu, Dan and Maier, Wolfgang and Cichon, Sven and Rietschel, Marcella and Nothen, Markus M.. (2016) Identification of rare variants in KCTD13 at the schizophrenia risk locus 16p11.2. Psychiatric Genetics, 26 (6). pp. 293-296.

Egli, Adrian and Lisboa, Luiz F. and O'Shea, Daire and Asberg, Anders and Mueller, Thomas and Emery, Vincent and Kumar, Deepali and Humar, Atul. (2016) Complexity of Host Micro-RNA Response to Cytomegalovirus Reactivation After Organ Transplantation. American Journal of Transplantation, 16 (2). pp. 650-660.

Linnik, Janina E. and Egli, Adrian. (2016) Impact of host genetic polymorphisms on vaccine induced antibody response. Human Vaccines & Immunotherapeutics, 12 (4). pp. 907-915.

Meinel, Dominique M. and Kuehl, Richard and Zbinden, Reinhard and Boskova, Veronika and Garzoni, Christian and Fadini, Davide and Dolina, Marisa and Blumel, Benjamin and Weibel, Thomas and Tschudin-Sutter, Sarah and Widmer, Andreas F. and Bielicki, Julia A. and Dierig, Alexa and Heininger, Ulrich and Konrad, Regina and Berger, Anja and Hinic, Vladimir and Goldenberger, Daniel and Blaich, Annette and Stadler, Tanja and Battegay, Manuel and Sing, Andreas and Egli, Adrian. (2016) Outbreak investigation for toxigenic Corynebacterium diphtheriae wound infections in refugees from Northeast Africa and Syria in Switzerland and Germany by whole genome sequencing. Clinical Microbiology and Infection, 22 (12). 1003e1-1003e8.

Oberle, Michael and Wohlwend, Nadia and Jonas, Daniel and Maurer, Florian P. and Jost, Geraldine and Tschudin-Sutter, Sarah and Vranckx, Katleen and Egli, Adrian. (2016) The Technical and Biological Reproducibility of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) Based Typing: Employment of Bioinformatics in a Multicenter Study. PLoS ONE, 11 (10). e0164260.

2015

Berger, C. and Bochud, P. Y. and Boggian, K. and Cusini, A. and Egli, A. and Garzoni, C. and Hirsch, H. H. and Hoffmann, M. and Khanna, N. and Manuel, O. and Meylan, P. and Nadal, D. and van Delden, C. and Weisser, M. and Mueller, N. J. and Transplant Infectious Diseases Working Group, Swiss Transplant Cohort Study. (2015) The Swiss Transplant Cohort Study: Lessons from the First 6 Years. Current Infectious Disease Reports, 17 (6). p. 486.

Bernsmeier, Christine and Weisskopf, Diego M. and Pflueger, Marlon O. and Mosimann, Jan and Campana, Benedetta and Terracciano, Luigi and Beglinger, Christoph and Heim, Markus H. and Cajochen, Christian. (2015) Sleep Disruption and Daytime Sleepiness Correlating with Disease Severity and Insulin Resistance in Non-Alcoholic Fatty Liver Disease: A Comparison with Healthy Controls. PLoS ONE, 10 (11). e0143293.

Dierig, Alexa and Frei, Reno and Egli, Adrian. (2015) The fast route to microbe identification: matrix assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS). The Pediatric Infectious Disease Journal, 34 (1). pp. 97-99.

Egli, A. and Osthoff, M. and Goldenberger, D. and Halter, J. and Schaub, S. and Steiger, J. and Weisser, M. and Frei, R.. (2015) Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF) directly from positive blood culture flasks allows rapid identification of bloodstream infections in immunosuppressed hosts. Transpl Infect Dis, 17 (3). pp. 481-487.

Egli, Adrian and Humar, Atul and Widmer, Lukas A. and Lisboa, Luiz F. and Santer, Deanna M. and Mueller, Thomas and Stelling, Joerg and Baluch, Aliyah and O'Shea, Daire and Houghton, Michael and Kumar, Deepali. (2015) Effect of Immunosuppression on T-Helper 2 and B-Cell Responses to Influenza Vaccination. The Journal of Infectious Diseases, 212 (1). pp. 137-146.

Egli, Adrian and Tschudin-Sutter, Sarah and Oberle, Michael and Goldenberger, Daniel and Frei, Reno and Widmer, Andreas F.. (2015) Matrix-assisted laser desorption/ionization time of flight mass-spectrometry (MALDI-TOF MS) based typing of extended-spectrum beta-lactamase producing E. coli--a novel tool for real-time outbreak investigation. PLoS One, 10 (4). e0120624.

Goldenberger, D. and Claas, G. J. and Bloch-Infanger, C. and Breidthardt, T. and Suter, B. and Martinez, M. and Neumayr, A. and Blaich, A. and Egli, A. and Osthoff, M.. (2015) Louse-borne relapsing fever (Borrelia recurrentis) in an Eritrean refugee arriving in Switzerland, August 2015. Eurosurveillance, 20 (32). p. 21204.

Lee, S. H. and Byrne, E. M. and Hultman, C. M. and Kahler, A. and Vinkhuyzen, A. A. and Ripke, S. and Andreassen, O. A. and Frisell, T. and Gusev, A. and Hu, X. and Karlsson, R. and Mantzioris, V. X. and McGrath, J. J. and Mehta, D. and Stahl, E. A. and Zhao, Q. and Kendler, K. S. and Sullivan, P. F. and Price, A. L. and O'Donovan, M. and Okada, Y. and Mowry, B. J. and Raychaudhuri, S. and Wray, N. R. and Schizophrenia Working Group of the Psychiatric Genomics, Consortium and Rheumatoid Arthritis Consortium, International and Schizophrenia Working Group of the Psychiatric Genomics Consorti, Authors and Byerley, W. and Cahn, W. and Cantor, R. M. and Cichon, S. and Cormican, P. and Curtis, D. and Djurovic, S. and Escott-Price, V. and Gejman, P. V. and Georgieva, L. and Giegling, I. and Hansen, T. F. and Ingason, A. and Kim, Y. and Konte, B. and Lee, P. H. and McIntosh, A. and McQuillin, A. and Morris, D. W. and Nothen, M. M. and O'Dushlaine, C. and Olincy, A. and Olsen, L. and Pato, C. N. and Pato, M. T. and Pickard, B. S. and Posthuma, D. and Rasmussen, H. B. and Rietschel, M. and Rujescu, D. and Schulze, T. G. and Silverman, J. M. and Thirumalai, S. and Werge, T. and Agartz, I. and Amin, F. and Azevedo, M. H. and Bass, N. and Black, D. W. and Blackwood, D. H. and Bruggeman, R. and Buccola, N. G. and Choudhury, K. and Cloninger, R. C. and Corvin, A. and Craddock, N. and Daly, M. J. and Datta, S. and Donohoe, G. J. and Duan, J. and Dudbridge, F. and Fanous, A. and Freedman, R. and Freimer, N. B. and Friedl, M. and Gill, M. and Gurling, H. and De Haan, L. and Hamshere, M. L. and Hartmann, A. M. and Holmans, P. A. and Kahn, R. S. and Keller, M. C. and Kenny, E. and Kirov, G. K. and Krabbendam, L. and Krasucki, R. and Lawrence, J. and Lencz, T. and Levinson, D. F. and Lieberman, J. A. and Lin, D. Y. and Linszen, D. H. and Magnusson, P. K. and Maier, W. and Malhotra, A. K. and Mattheisen, M. and Mattingsdal, M. and McCarroll, S. A. and Medeiros, H. and Melle, I. and Milanova, V. and Myin-Germeys, I. and Neale, B. M. and Ophoff, R. A. and Owen, M. J. and Pimm, J. and Purcell, S. M. and Puri, V. and Quested, D. J. and Rossin, L. and Ruderfer, D. and Sanders, A. R. and Shi, J. and Sklar, P. and St Clair, D. and Stroup, T. S. and Van Os, J. and Visscher, P. M. and Wiersma, D. and Zammit, S. and Rheumatoid Arthritis Consortium International, Authors and Bridges, S. L. and Jr., and Choi, H. K. and Coenen, M. J. and de Vries, N. and Dieud, P. and Greenberg, J. D. and Huizinga, T. W. and Padyukov, L. and Siminovitch, K. A. and Tak, P. P. and Worthington, J. and De Jager, P. L. and Denny, J. C. and Gregersen, P. K. and Klareskog, L. and Mariette, X. and Plenge, R. M. and van Laar, M. and van Riel, P.. (2015) New data and an old puzzle: the negative association between schizophrenia and rheumatoid arthritis. International Journal of Epidemiology, 44 (5). pp. 1706-1721.

Lisboa, L. F. and Egli, A. and O'Shea, D. and Asberg, A. and Hartmann, A. and Rollag, H. and Pang, X. L. and Tyrrell, D. L. and Kumar, D. and Humar, A.. (2015) Hcmv-miR-UL22A-5p: A Biomarker in Transplantation With Broad Impact on Host Gene Expression and Potential Immunological Implications. Am J Transplant, 15 (7). pp. 1893-1902.

Lisboa, Luiz F. and Egli, Adrian and Fairbanks, Jared and O'Shea, Daire and Manuel, Oriol and Husain, Shahid and Kumar, Deepali and Humar, Atul. (2015) CCL8 and the Immune Control of Cytomegalovirus in Organ Transplant Recipients. American Journal of Transplantation, 15 (7). pp. 1882-1892.

Mandal, Jyotshna and Malla, Bijaya and Steffensen, Rudi and Costa, Luigi and Egli, Adrian and Trendelenburg, Marten and Blasi, Francesco and Kostikas, Kostantinos and Welte, Tobias and Torres, Antoni and Louis, Renaud and Boersma, Wim and Milenkovic, Branislava and Aerts, Joachim and Rohde, Gernot G. and Lacoma, Alicia and Rentsch, Katharina and Roth, Michael and Tamm, Michael and Stolz, Daiana. (2015) Mannose-binding lectin protein and its association to clinical outcomes in COPD: a longitudinal study. Respir Res, 16. p. 150.

Manuel, O. and Wojtowicz, A. and Bibert, S. and Mueller, N. J. and van Delden, C. and Hirsch, H. H. and Steiger, J. and Stern, M. and Egli, A. and Garzoni, C. and Binet, I. and Weisser, M. and Berger, C. and Cusini, A. and Meylan, P. and Pascual, M. and Bochud, P. Y. and Swiss Transplant Cohort, Study. (2015) Influence of IFNL3/4 Polymorphisms on the Incidence of Cytomegalovirus Infection After Solid-Organ Transplantation. The Journal of Infectious Diseases, 211 (6). pp. 906-914.

Nowakowska, J. and Stuehler, C. and Egli, A. and Battegay, M. and Rauser, G. and Bantug, G. R. and Brander, C. and Hess, C. and Khanna, N.. (2015) T cells specific for different latent and lytic viral proteins efficiently control Epstein-Barr virus-transformed B cells. Cytotherapy, 17 (9). pp. 1280-1291.

2014

Braissant, Olivier and Müller, Georg and Egli, Adrian and Widmer, Andreas F. and Frei, Reno and Halla, Armin and Wirz, Dieter and Gasser, Thomas C. and Bachmann, Alexander and Wagenlehner, Florian and Bonkat, Gernot. (2014) Seven hours to adequate antimicrobial therapy in urosepsis using isothermal microcalorimetry. Journal of clinical microbiology, 52 (2). pp. 624-626.

Egli, Adrian and Levin, Aviad and Santer, Deanna M. and Joyce, Michel and O'Shea, Daire and Thomas, Brad S. and Lisboa, Luiz F. and Barakat, Khaled and Bhat, Rakesh and Fischer, Karl P. and Houghton, Michael and Tyrrell, D. Lorne and Kumar, Deepali and Humar, Atul. (2014) Immunomodulatory Function of Interleukin 28B during primary infection with cytomegalovirus. Journal of Infectious Diseases, 210 (5). pp. 717-727.

Egli, Adrian and Santer, Deanna M. and Barakat, Khaled and Zand, Martin and Levin, Aviad and Vollmer, Madeleine and Weisser, Maja and Khanna, Nina and Kumar, Deepali and Tyrrell, D. Lorne and Houghton, Michael and Battegay, Manuel and O'Shea, Daire. (2014) Vaccine adjuvants--understanding molecular mechanisms to improve vaccines. Swiss Medical Weekly, 144. w13940.

Egli, Adrian and Santer, Deanna M. and O'Shea, Daire and Barakat, Khaled and Syedbasha, Mohammedyaseen and Vollmer, Madeleine and Baluch, Aliyah and Bhat, Rakesh and Groenendyk, Jody and Joyce, Michael A. and Lisboa, Luiz F. and Thomas, Brad S. and Battegay, Manuel and Khanna, Nina and Mueller, Thomas and Tyrrell, D. Lorne and Houghton, Michael and Humar, Atul and Kumar, Deepali. (2014) IL-28B is a key regulator of B- and T-cell vaccine responses against influenza. PLoS Pathogens, 10 (12). e1004556.

Egli, Adrian and Santer, Deanna M. and O'Shea, Daire and Tyrrell, D. Lorne and Houghton, Michael. (2014) The impact of the interferon-lambda family on the innate and adaptive immune response to viral infections. Emerging Microbes and Infections, 3 (1). e51.

Fasel, Dominique and Mellmann, Alexander and Cernela, Nicole and Hächler, Herbert and Fruth, Angelika and Khanna, Nina and Egli, Adrian and Beckmann, Christiane and Hirsch, Hans H. and Goldenberger, Daniel and Stephan, Roger. (2014) Hemolytic uremic syndrome in a 65-Year-old male linked to a very unusual type of stx2e- and eae-harboring O51:H49 shiga toxin-producing Escherichia coli. Journal of clinical microbiology, 52 (4). pp. 1301-1303.

2013

Dirks, J. and Egli, A. and Sester, U. and Sester, M. and Hirsch, H. H.. (2013) Blockade of programmed death receptor-1 signaling restores expression of mostly proinflammatory cytokines in anergic cytomegalovirus-specific T cells. Transplant infectious disease, Vol. 15, H. 1. pp. 79-89.

Egli, A. and Schafer, J. and Osthoff, M. and Thiel, S. and Mikkelsen, C. and Rauch, A. and Hirsch, H. H. and Bucher, H. C. and Young, J. and Jensenius, J. C. and Battegay, M. and Trendelenburg, M.. (2013) Low levels of mannan-binding lectin or ficolins are not associated with an increased risk of cytomegalovirus disease in HIV-infected patients. PLoS ONE, 8 (1). e51983.

Prelog, M. and Egli, A. and Zlamy, M. and Hirsch, H. H.. (2013) JC and BK polyomavirus-specific immunoglobulin G responses in patients thymectomized in early childhood. Journal of clinical virology, Vol. 58, H. 3. pp. 553-558.

2012

Egli, A. and Bucher, C. and Dumoulin, A. and Stern, M. and Buser, A. and Bubendorf, L. and Gregor, M. and Servida, P. and Sommer, G. and Bremerich, J. and Gratwohl, A. and Khanna, N. and Widmer, A. F. and Battegay, M. and Tamm, M. and Hirsch, H. H. and Halter, J. P.. (2012) Human metapneumovirus infection after allogeneic hematopoietic stem cell transplantation. Infection, 40 (6). pp. 677-684.