Items where Division is "05 Faculty of Science > Departement Biozentrum > Infection Biology > Infection Biology (Basler)"

A

Adamer, Michael F. and Brüningk, Sarah C. and Tejada-Arranz, Alejandro and Estermann, Fabienne and Basler, Marek and Borgwardt, Karsten. (2022) reComBat: batch-effect removal in large-scale multi-source gene-expression data integration. Bioinformatics Advances, 2 (1). vbac071.

Adamer, Michael R. and Brüningk, Sarah C. and Tejada-Arranz, Alejandro and Estermann, Fabienne and Basler, Marek and Borgwardt, Karsten. (2021) reComBat: Batch effect removal in large-scale, multi-source omics data integration.

Agnetti, Jessica and Seth-Smith, Helena M. B. and Ursich, Sebastian and Reist, Josiane and Basler, Marek and Nickel, Christian and Bassetti, Stefano and Ritz, Nicole and Tschudin-Sutter, Sarah and Egli, Adrian. (2019) Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection. BMC infectious diseases, 19. 19:237.

B

Brodmann, Maj and Schnider, Sophie T. and Basler, Marek. (2021) Type VI Secretion System and Its Effectors PdpC, PdpD, and OpiA Contribute to; Francisella; Virulence in Galleria mellonella Larvae. Infection and immunity, 89 (7). e0057920.

Brodmann, Maj. Localization matters : new insights into spatio-temporal regulation of type VI secretion systems. 2019, Doctoral Thesis, University of Basel, Faculty of Science.

Brackmann, Maximilian and Wang, Jing and Basler, Marek. (2018) Type VI secretion system sheath inter-subunit interactions modulate its contraction. EMBO reports, 19 (2). pp. 225-233.

Brodmann, Maj and Heilig, Rosalie and Broz, Petr and Basler, Marek. (2018) Mobilizable Plasmids for Tunable Gene Expression in Francisella novicida. Frontiers in cellular and infection microbiology, 8. p. 284.

Brackmann, Maximilian. Mechanistic and structural insights into the type VI secretion system tail of "vibrio cholerae". 2017, Doctoral Thesis, University of Basel, Faculty of Science.

Brackmann, Maximilian and Nazarov, Sergey and Wang, Jing and Basler, Marek. (2017) Using Force to Punch Holes: Mechanics of Contractile Nanomachines. Trends in Cell Biology, 27 (9). pp. 623-632.

Brodmann, Maj and Dreier, Roland F. and Broz, Petr and Basler, Marek. (2017) Francisella requires dynamic type VI secretion system and ClpB to deliver effectors for phagosomal escape. Nature Communications, 8. p. 15853.

Basler, Marek. (2015) Type VI secretion system : secretion by a contractile nanomachine. Philosophical Transactions : the Royal Society of London, Vol. 370, H. 1679. p. 20150021.

Borenstein, David Bruce and Ringel, Peter and Basler, Marek and Wingreen, Ned S.. (2015) Established microbial colonies can survive type VI secretion assault. PLoS Computational Biology, 11 (10). e1004520.

Basler, Marek and Ho, Brian T. and Mekalanos, John J.. (2013) Tit-for-tat: type VI secretion system counterattack during bacterial cell-cell interactions. Cell, 152 (4). pp. 884-894.

Basler, M. and Mekalanos, J. J.. (2012) Type 6 secretion dynamics within and between bacterial cells. Science, 337 (6096). p. 815.

Basler, M. and Pilhofer, M. and Henderson, G. P. and Jensen, G. J. and Mekalanos, J. J.. (2012) Type VI secretion requires a dynamic contractile phage tail-like structure. Nature, 483 (7388). pp. 182-186.

Basler, Marek and Knapp, Oliver and Masin, Jiri and Fiser, Radovan and Maier, Elke and Benz, Roland and Sebo, Peter and Osicka, Radim. (2007) Segments crucial for membrane translocation and pore-forming activity of Bordetella adenylate cyclase toxin. Journal of Biological Chemistry, 282 (17). pp. 12419-12429.

Basler, Marek and Linhartová, Irena and Halada, Petr and Novotná, Jana and Bezousková, Silvia and Osicka, Radim and Weiser, Jaroslav and Vohradský, Jirí and Sebo, Peter. (2006) The iron-regulated transcriptome and proteome of Neisseria meningitidis serogroup C. Proteomics, 6 (23). pp. 6194-6206.

Basler, Marek and Masin, Jiri and Osicka, Radim and Sebo, Peter. (2006) Pore-forming and enzymatic activities of Bordetella pertussis adenylate cyclase toxin synergize in promoting lysis of monocytes. Infection and Immunity, 74 (4). pp. 2207-2214.

F

Fiser, Radovan and Masin, Jiri and Bumba, Ladislav and Pospisilova, Eva and Fayolle, Catherine and Basler, Marek and Sadilkova, Lenka and Adkins, Irena and Kamanova, Jana and Cerny, Jan and Konopasek, Ivo and Osicka, Radim and Leclerc, Claude and Sebo, Peter. (2012) Calcium influx rescues adenylate cyclase-hemolysin from rapid cell membrane removal and enables phagocyte permeabilization by toxin pores. PLoS Pathogens, 8 (4). e1002580.

Fiser, Radovan and Masín, Jirí and Basler, Marek and Krusek, Jan and Spuláková, Veronika and Konopásek, Ivo and Sebo, Peter. (2007) Third activity of Bordetella adenylate cyclase (AC) toxin-hemolysin. Membrane translocation of AC domain polypeptide promotes calcium influx into CD11b+ monocytes independently of the catalytic and hemolytic activities. Journal of Biological Chemistry, 282 (5). pp. 2808-2820.

Frýdlová, Ivana and Basler, Marek and Vasicová, Pavla and Malcová, Ivana and Hasek, Jirí. (2007) Special type of pheromone-induced invasive growth in Saccharomyces cerevisiae. Current Genetics, 52 (2). pp. 87-95.

G

García-Bayona, Leonor and Coyne, Michael J. and Hantman, Noam and Montero-Llopis, Paula and Von, Salena S. and Ito, Takeshi and Malamy, Michael H. and Basler, Marek and Barquera, Blanca and Comstock, Laurie E.. (2020) Nanaerobic growth enables direct visualization of dynamic cellular processes in human gut symbionts. Proceedings of the National Academy of Sciences of the United States of America, 117 (39). pp. 24484-24493.

H

Ho, Brian T. and Basler, Marek and Mekalanos, John J.. (2013) Type 6 secretion system-mediated immunity to type 4 secretion system-mediated gene transfer. Science, 342 (6155). pp. 250-253.

Horváthová, Lenka and Safaríková, Lucie and Basler, Marek and Hrdy, Ivan and Campo, Neritza B. and Shin, Jyh-Wei and Huang, Kuo-Yang and Huang, Po-Jung and Lin, Rose and Tang, Petrus and Tachezy, Jan. (2012) Transcriptomic identification of iron-regulated and iron-independent gene copies within the heavily duplicated Trichomonas vaginalis genome. Genome Biology and Evolution, 4 (10). pp. 1017-1029.

K

Kudryashev, Mikhail and Wang, Ray Yu-Ruei and Brackmann, Maximilian and Scherer, Sebastian and Maier, Timm and Baker, David and DiMaio, Frank and Stahlberg, Henning and Egelman, Edward H. and Basler, Marek. (2015) Structure of the Type VI Secretion System Contractile Sheath. Cell, Vol. 160, H. 5. pp. 952-962.

L

Lin, Lin and Lezan, Emmanuelle and Schmidt, Alexander and Basler, Marek. (2019) Abundance of bacterial Type VI secretion system components measured by targeted proteomics. Nature Communications, 10 (1). p. 2584.

Lin, Lin and Ringel, Peter David and Vettiger, Andrea and Dürr, Lara and Basler, Marek. (2019) DNA Uptake upon T6SS-Dependent Prey Cell Lysis Induces SOS Response and Reduces Fitness of Acinetobacter baylyi. Cell reports, 29 (6). pp. 1633-1644.e4.

Linhartová, Irena and Bumba, Ladislav and Mašín, Jiří and Basler, Marek and Osička, Radim and Kamanová, Jana and Procházková, Kateřina and Adkins, Irena and Hejnová-Holubová, Jana and Sadílková, Lenka and Morová, Jana and Sebo, Peter. (2010) RTX proteins: a highly diverse family secreted by a common mechanism. FEMS Microbiology Reviews, 34 (6). pp. 1076-1112.

Leiman, Petr G. and Basler, Marek and Ramagopal, Udupi A. and Bonanno, Jeffrey B. and Sauder, J. Michael and Pukatzki, Stefan and Burley, Stephen K. and Almo, Steven C. and Mekalanos, John J.. (2009) Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin. Proceedings of the National Academy of Sciences, 106 (11). pp. 4154-4159.

Linhartova, Irena and Basler, Marek and Ichikawa, Jeffrey and Pelicic, Vladimir and Osicka, Radim and Lory, Stephen and Nassif, Xavier and Sebo, Peter. (2006) Meningococcal adhesion suppresses proapoptotic gene expression and promotes expression of genes supporting early embryonic and cytoprotective signaling of human endothelial cells. FEMS Microbiology Letters, 263 (1). pp. 109-118.

M

Masin, Jiri and Basler, Marek and Knapp, Oliver and El-Azami-El-Idrissi, Mohammed and Maier, Elke and Konopasek, Ivo and Benz, Roland and Leclerc, Claude and Sebo, Peter. (2005) Acylation of lysine 860 allows tight binding and cytotoxicity of Bordetella adenylate cyclase on CD11b-expressing cells. Biochemistry, 44 (38). pp. 12759-12766.

N

Nazarov, Sergey and Schneider, Johannes P. and Brackmann, Maximilian and Goldie, Kenneth N. and Stahlberg, Henning and Basler, Marek. (2018) Cryo-EM reconstruction of Type VI secretion system baseplate and sheath distal end. The EMBO journal, 37 (4). e97103.

Nelson, Michaeline B. and Chase, Alexander B. and Martiny, Jennifer B. H. and Stocker, Roman and Nguyen, Jen and Lloyd, Karen and Oshiro, Reid T. and Kearns, Daniel B. and Schneider, Johannes P. and Ringel, Peter D. and Basler, Marek and Olson, Christine A. and Vuong, Helen E. and Hsiao, Elaine Y. and Roller, Benjamin R. K. and Ackermann, Martin and Smillie, Chris and Chien, Diana and Alm, Eric and Jermy, Andrew J.. (2016) The Microbial Olympics 2016. Nature Microbiology, 1 (8). p. 16122.

O

Osickova, Adriana and Masin, Jiri and Fayolle, Catherine and Krusek, Jan and Basler, Marek and Pospisilova, Eva and Leclerc, Claude and Osicka, Radim and Sebo, Peter. (2010) Adenylate cyclase toxin translocates across target cell membrane without forming a pore. Molecular Microbiology, 75 (6). pp. 1550-1562.

P

Plum, Miro Thorsten Wilhelm. Understanding the role of Type 6 secretion system-5 in spread of Burkholderia thailandensis between host cells. 2023, Doctoral Thesis, University of Basel, Faculty of Science.

Pánek, Josef and Bobek, Jan and Mikulík, Karel and Basler, Marek and Vohradský, Jirí. (2008) Biocomputational prediction of small non-coding RNAs in Streptomyces. BMC Genomics, 9. p. 217.

R

Ringel, Peter David. Mechanisms of delivery and mode of action of type VI secretion system effectors. 2017, Doctoral Thesis, University of Basel, Faculty of Science.

Ringel, Peter David and Hu, Di and Basler, Marek. (2017) The Role of Type VI Secretion System Effectors in Target Cell Lysis and Subsequent Horizontal Gene Transfer. Cell Reports, 21 (13). pp. 3927-3940.

Rao, Jayasimha and Damron, F. Heath and Basler, Marek and Digiandomenico, Antonio and Sherman, Nicholas E. and Fox, Jay W. and Mekalanos, John J. and Goldberg, Joanna B.. (2011) Comparisons of Two Proteomic Analyses of Non-Mucoid and Mucoid Pseudomonas aeruginosa Clinical Isolates from a Cystic Fibrosis Patient. Frontiers in Microbiology, 2. p. 162.

S

Smith, William P. J. and Brodmann, Maj and Unterweger, Daniel and Davit, Yohan and Comstock, Laurie E. and Basler, Marek and Foster, Kevin R.. (2020) The evolution of tit-for-tat in bacteria via the type VI secretion system. Nature communications, 11 (1). p. 5395.

Smith, William P. J. and Vettiger, Andrea and Winter, Julius and Ryser, Till and Comstock, Laurie E. and Basler, Marek and Foster, Kevin R.. (2020) The evolution of the type VI secretion system as a disintegration weapon. PLoS biology, 18 (5). e3000720.

Schneider, Johannes Paul and Nazarov, Sergey and Adaixo, Ricardo and Liuzzo, Martina and Ringel, Peter David and Stahlberg, Henning and Basler, Marek. (2019) Diverse roles of TssA-like proteins in the assembly of bacterial type VI secretion systems. The EMBO journal, 38. e100825.

Schneider, Johannes P. and Basler, Marek. (2016) Shedding light on biology of bacterial cells. Philosophical Transactions of the Royal Society of London, Series B : Biological Sciences , 371 (1707). p. 20150499.

Shneider, Mikhail M. and Buth, Sergey A. and Ho, Brian T. and Basler, Marek and Mekalanos, John J. and Leiman, Petr G.. (2013) PAAR-repeat proteins sharpen and diversify the type VI secretion system spike. Nature, 500 (7462). pp. 350-353.

Sasková, Lenka and Nováková, Linda and Basler, Marek and Branny, Pavel. (2007) Eukaryotic-type serine/threonine protein kinase StkP is a global regulator of gene expression in Streptococcus pneumoniae. Journal of Bacteriology, 189 (11). pp. 4168-4179.

T

Trotta, Kristine L. and Hayes, Beth M. and Schneider, Johannes P. and Wang, Jing and Todor, Horia and Rockefeller Grimes, Patrick and Zhao, Ziyi and Hatleberg, William L. and Silvis, Melanie R. and Kim, Rachel and Koo, Byoung Mo and Basler, Marek and Chou, Seemay. (2023) Lipopolysaccharide integrity primes bacterial sensitivity to a cell wall-degrading intermicrobial toxin.

Trotta, Kristine L. and Hayes, Beth M. and Schneider, Johannes P. and Wang, Jing and Todor, Horia and Rockefeller Grimes, Patrick and Zhao, Ziyi and Hatleberg, William L. and Silvis, Melanie R. and Kim, Rachel and Koo, Byoung Mo and Basler, Marek and Chou, Seemay. (2023) Lipopolysaccharide transport regulates bacterial sensitivity to a cell wall-degrading intermicrobial toxin. PLoS Pathogens, 19 (6). e1011454.

V

Vettiger, Andrea. Shining light on T6SS mode of action and function within single cells and bacterial communities. 2019, Doctoral Thesis, University of Basel, Faculty of Science.

Vettiger, Andrea and Winter, Julius and Lin, Lin and Basler, Marek. (2017) The type VI secretion system sheath assembles at the end distal from the membrane anchor. Nature Communications, 8. p. 16088.

Vettiger, Andrea and Basler, Marek. (2016) Type VI Secretion System Substrates Are Transferred and Reused among Sister Cells. Cell, 167 (1). pp. 99-110.e12.

Vojtova-Vodolanova, Jana and Basler, Marek and Osicka, Radim and Knapp, Oliver and Maier, Elke and Cerny, Jan and Benada, Oldrich and Benz, Roland and Sebo, Peter. (2009) Oligomerization is involved in pore formation by Bordetella adenylate cyclase toxin. FASEB Journal, 23 (9). pp. 2831-2843.

W

Wang, Jing and Brodmann, Maj and Basler, Marek. (2019) Assembly and Subcellular Localization of Bacterial Type VI Secretion Systems. Annual Review of Microbiology, 73. pp. 621-638.

Wang, Jing and Brackmann, Maximilian and Castaño-Díez, Daniel and Kudryashev, Mikhail and Goldie, Kenneth N. and Maier, Timm and Stahlberg, Henning and Basler, Marek. (2017) Cryo-EM structure of the extended type VI secretion system sheath-tube complex. Nature Microbiology, 2 (11). pp. 1507-1512.

Wang, Ray Yu-Ruei and Kudryashev, Mikhail and Li, Xueming and Egelman, Edward H. and Basler, Marek and Cheng, Yifan and Baker, David and DiMaio, Frank. (2015) De novo protein structure determination from near-atomic-resolution cryo-EM maps. Nature methods, Vol. 12, H. 4 , S. 335–338.

Y

Yan, Jingyi. The multiple roles of cold-inducible RBM3 in neural stem cells after hypoxia-ischemia injury. 2020, Doctoral Thesis, University of Basel, Faculty of Science.