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2022

van Vliet, Simon and Hauert, Christoph and Fridberg, Kyle and Ackermann, Martin and Dal Co, Alma. (2022) Global dynamics of microbial communities emerge from local interaction rules. PLoS Computational Biology, 18 (3). e1009877.

2021

Henriques, Gil J. B. and van Vliet, Simon and Doebeli, Michael. (2021) Multilevel selection favors fragmentation modes that maintain cooperative interactions in multispecies communities. PLoS Computational Biology, 17 (9). e1008896.

Moreno-Gámez, Stefany and Dal Co, Alma and van Vliet, Simon and Ackermann, Martin. (2021) Microfluidics for Single-Cell Study of Antibiotic Tolerance and Persistence Induced by Nutrient Limitation. In: Bacterial Persistence: Methods and Protocols. New York, NY, pp. 107-124.

2020

van Vliet, Simon and Doebeli, Michael. (2020) Reply to Daybog and Kolodny: Necessary requirements for holobiont-level selection are robust to model assumptions. Proceedings of the National Academy of Sciences of the United States of America, 117 (22). p. 11864.

Dal Co, Alma and van Vliet, Simon and Kiviet, Daniel Johannes and Schlegel, Susan and Ackermann, Martin. (2020) Short-range interactions govern the dynamics and functions of microbial communities. Nature ecology & evolution, 4 (3). pp. 366-375.

2019

Dal Co, Alma and van Vliet, Simon and Ackermann, Martin. (2019) Emergent microscale gradients give rise to metabolic cross-feeding and antibiotic tolerance in clonal bacterial populations. Philosophical Transactions B: Biological Sciences, 374 (1786). p. 20190080.

van Vliet, Simon and Doebeli, Michael. (2019) The role of multilevel selection in host microbiome evolution. Proceedings of the National Academy of Sciences of the United States of America, 116 (41). pp. 20591-20597.

Dal Co, Alma and Ackermann, Martin and van Vliet, Simon. (2019) Metabolic activity affects the response of single cells to a nutrient switch in structured populations. Journal of the Royal Society, Interface, 16 (156). p. 20190182.

2018

Patsch, Deborah and van Vliet, Simon and Marcantini, Lorenzo Garbani and Johnson, David R.. (2018) Generality of associations between biological richness and the rates of metabolic processes across microbial communities. Environmental Microbiology, 20 (12). pp. 4356-4368.

van Vliet, Simon and Dal Co, Alma and Winkler, Annina R. and Spriewald, Stefanie and Stecher, Bärbel and Ackermann, Martin. (2018) Spatially Correlated Gene Expression in Bacterial Groups: The Role of Lineage History, Spatial Gradients, and Cell-Cell Interactions. Cell Systems, 6 (4). pp. 496-507.e6.

2017

Bayramoglu, Bihter and Toubiana, David and van Vliet, Simon and Inglis, R. Fredrik and Shnerb, Nadav and Gillor, Osnat. (2017) Bet-hedging in bacteriocin producing Escherichia coli populations: the single cell perspective. Scientific Reports, 7. p. 42068.

van Vliet, Simon and Ackermann, Martin. (2017) Stochastic gene expression: bacterial elites in chemotaxis. Molecular systems biology, 13 (1). p. 909.

2015

van Vliet, Simon. (2015) Bacterial Dormancy: How to Decide When to Wake Up. Current Biology, 25 (17). R753-R755.

van Vliet, Simon and Ackermann, Martin. (2015) Bacterial Ventures into Multicellularity: Collectivism through Individuality. PLoS biology, 13 (6). e1002162.

2014

van Vliet, Simon and Hol, Felix J. H. and Weenink, Tim and Galajda, Peter and Keymer, Juan E.. (2014) The effects of chemical interactions and culture history on the colonization of structured habitats by competing bacterial populations. BMC Microbiology, 14. p. 116.