Browse by Basel Contributors ID

2022

Lentsch, Verena and Woller, Aurore and Moresi, Claudia and Fattinger, Stefan A. and Aslani, Selma and Hardt, Wolf-Dietrich and Loverdo, Claude and Diard, Médéric and Slack, Emma. (2022) Combined oral vaccination with niche competition can generate sterilizing immunity against entero-pathogenic bacteria.

Sobota, Malgorzata and Rodilla Ramirez, Pilar Natalia and Cambré, Alexander and Rocker, Andrea and Mortier, Julien and Gervais, Théo and Haas, Tiphaine and Cornillet, Delphine and Chauvin, Dany and Hug, Isabelle and Julou, Thomas and Aertsen, Abram and Diard, Médéric. (2022) The expression of virulence genes increases membrane permeability and sensitivity to envelope stress in Salmonella Typhimurium. PLoS Biology, 20 (4). e3001608.

Ramirez Garcia, Alejandro and Hurley, Katherine and Marastoni, Giovanni and Diard, Médéric and Hofer, Sophie and Greppi, Anna and Hardt, Wolf-Dietrich and Lacroix, Christophe and Sturla, Shana J. and Schwab, Clarissa. (2022) Pathogenic and Commensal Gut Bacteria Harboring Glycerol/Diol Dehydratase Metabolize Glycerol and Produce DNA-Reactive Acrolein. Chemical research in toxicology, 35 (10). pp. 1840-1850.

Slack, Emma and Diard, Médéric. (2022) Resistance is futile? Mucosal immune mechanisms in the context of microbial ecology and evolution. Mucosal Immunology, 15 (6). pp. 1188-1198.

Bakkeren, Erik and Gül, Ersin and Huisman, Jana S. and Steiger, Yves and Rocker, Andrea and Hardt, Wolf-Dietrich and Diard, Médéric. (2022) Impact of horizontal gene transfer on emergence and stability of cooperative virulence in Salmonella Typhimurium. Nature Communications, 13 (1). p. 1939.

2021

Sobota, Malgorzata and Rodilla Ramirez, Pilar Natalia and Cambré, Alexander and Haas, Tiphaine and Cornillet, Delphine and Rocker, Andrea and Aertsen, Abram and Diard, Médéric. (2021) The expression of virulence increases outer-membrane permeability and sensitivity to envelope stress in Salmonella Typhimurium.

Bakkeren, Erik and Gül, Ersin and Huisman, Jana S. and Steiger, Yves and Rocker, Andrea and Hardt, Wolf-Dietrich and Diard, Médéric. (2021) Cooperative virulence can emerge via horizontal gene transfer but is stabilized by transmission.

Benz, Fabienne and Huisman, Jana S. and Bakkeren, Erik and Herter, Joana A. and Stadler, Tanja and Ackermann, Martin and Diard, Médéric and Egli, Adrian and Hall, Alex R. and Hardt, Wolf-Dietrich and Bonhoeffer, Sebastian. (2021) Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo. The ISME journal, 15 (3). pp. 862-878.

Diard, Médéric and Bakkeren, Erik and Lentsch, Verena and Rocker, Andrea and Bekele, Nahimi Amare and Hoces, Daniel and Aslani, Selma and Arnoldini, Markus and Böhi, Flurina and Schumann-Moor, Kathrin and Adamcik, Jozef and Piccoli, Luca and Lanzavecchia, Antonio and Stadtmueller, Beth M. and Donohue, Nicholas and van der Woude, Marjan W. and Hockenberry, Alyson and Viollier, Patrick H. and Falquet, Laurent and Wüthrich, Daniel and Bonfiglio, Ferdinando and Loverdo, Claude and Egli, Adrian and Zandomeneghi, Giorgia and Mezzenga, Raffaele and Holst, Otto and Meier, Beat H. and Hardt, Wolf-Dietrich and Slack, Emma. (2021) A rationally designed oral vaccine induces immunoglobulin A in the murine gut that directs the evolution of attenuated Salmonella variants. Nature Microbiology, 6 (7). pp. 830-841.

Bakkeren, Erik and Herter, Joana Anuschka and Huisman, Jana Sanne and Steiger, Yves and Gül, Ersin and Newson, Joshua Patrick Mark and Brachmann, Alexander Oliver and Piel, Jörn and Regoes, Roland and Bonhoeffer, Sebastian and Diard, Médéric and Hardt, Wolf-Dietrich. (2021) Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut. eLife, 10. e69744.

2020

Hausmann, Annika and Böck, Desirée and Geiser, Petra and Berthold, Dorothée L. and Fattinger, Stefan A. and Furter, Markus and Bouman, Judith A. and Barthel-Scherrer, Manja and Lang, Crispin M. and Bakkeren, Erik and Kolinko, Isabel and Diard, Médéric and Bumann, Dirk and Slack, Emma and Regoes, Roland R. and Pilhofer, Martin and Sellin, Mikael E. and Hardt, Wolf-Dietrich. (2020) Intestinal epithelial NAIP/NLRC4 restricts systemic dissemination of the adapted pathogen Salmonella Typhimurium due to site-specific bacterial PAMP expression. Mucosal Immunology (13). pp. 530-544.

Hoces, Daniel and Arnoldini, Markus and Diard, Médéric and Loverdo, Claude and Slack, Emma. (2020) Growing, evolving and sticking in a flowing environment: understanding IgA interactions with bacteria in the gut. Immunology, 159 (1). pp. 52-62.

Bakkeren, Erik and Diard, Médéric and Hardt, Wolf-Dietrich. (2020) Evolutionary causes and consequences of bacterial antibiotic persistence. Nature reviews. Microbiology, 18 (9). pp. 479-490.

2019

Diard, Médéric and Bakkeren, Erik and Hoces, Daniel and Lentsch, Verena and Arnoldini, Markus and Böhi, Flurina and Schumann-Moor, Kathrin and Adamcik, Jozef and Piccoli, Luca and Lanzavecchia, Antonio and Stadtmueller, Beth M. and Donohue, Nicholas and van der Woude, Marjan W. and Hockenberry, Alyson and Viollier, Patrick H. and Falquet, Laurent and Wüthrich, Daniel and Bonfiglio, Ferdinando and Egli, Adrian and Zandomeneghi, Giorgia and Mezzenga, Raffaele and Holst, Otto and Meier, Beat H. and Hardt, Wolf-Dietrich and Slack, Emma. (2019) Rationally designed oral vaccines can set an evolutionary trap for Salmonella Typhimurium.

Harms, Alexander and Diard, Médéric. (2019) Crowd Controlled-Host Quorum Sensing Drives Phage Decision. Cell host & microbe, 25 (2). pp. 179-181.

Bansept, Florence and Schumann-Moor, Kathrin and Diard, Médéric and Hardt, Wolf-Dietrich and Slack, Emma and Loverdo, Claude. (2019) Enchained growth and cluster dislocation: A possible mechanism for microbiota homeostasis. PLoS computational biology, 15 (5). e1006986.

Bakkeren, Erik and Huisman, Jana S. and Fattinger, Stefan A. and Hausmann, Annika and Furter, Markus and Egli, Adrian and Slack, Emma and Sellin, Mikael E. and Bonhoeffer, Sebastian and Regoes, Roland R. and Diard, Médéric and Hardt, Wolf-Dietrich. (2019) Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut. Nature, 573 (7773). pp. 276-280.

Wotzka, Sandra Y. and Kreuzer, Markus and Maier, Lisa and Arnoldini, Markus and Nguyen, Bidong D. and Brachmann, Alexander O. and Berthold, Dorothée L. and Zünd, Mirjam and Hausmann, Annika and Bakkeren, Erik and Hoces, Daniel and Gül, Ersin and Beutler, Markus and Dolowschiak, Tamas and Zimmermann, Michael and Fuhrer, Tobias and Moor, Kathrin and Sauer, Uwe and Typas, Athanasios and Piel, Jörn and Diard, Médéric and Macpherson, Andrew J. and Stecher, Bärbel and Sunagawa, Shinichi and Slack, Emma and Hardt, Wolf-Dietrich. (2019) Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice. Nature microbiology, 4 (12). pp. 2164-2174.

2017

Diard, Médéric and Hardt, Wolf-Dietrich. (2017) Basic Processes in Salmonella-Host Interactions: Within-Host Evolution and the Transmission of the Virulent Genotype. Microbiology Spectrum, 5 (5). epub.

Diard, Médéric and Hardt, Wolf-Dietrich. (2017) Evolution of bacterial virulence. FEMS Microbiology Reviews, 41 (5). pp. 679-697.

Moor, Kathrin and Diard, Médéric and Sellin, Mikael E. and Felmy, Boas and Wotzka, Sandra Y. and Toska, Albulena and Bakkeren, Erik and Arnoldini, Markus and Bansept, Florence and Co, Alma Dal and Völler, Tom and Minola, Andrea and Fernandez-Rodriguez, Blanca and Agatic, Gloria and Barbieri, Sonia and Piccoli, Luca and Casiraghi, Costanza and Corti, Davide and Lanzavecchia, Antonio and Regoes, Roland R. and Loverdo, Claude and Stocker, Roman and Brumley, Douglas R. and Hardt, Wolf-Dietrich and Slack, Emma. (2017) High-avidity IgA protects the intestine by enchaining growing bacteria. Nature, 544 (7651). pp. 498-502.

Diard, Médéric and Bakkeren, Erik and Cornuault, Jeffrey K. and Moor, Kathrin and Hausmann, Annika and Sellin, Mikael E. and Loverdo, Claude and Aertsen, Abram and Ackermann, Martin and De Paepe, Marianne and Slack, Emma and Hardt, Wolf-Dietrich. (2017) Inflammation boosts bacteriophage transfer between Salmonella spp. Science, 355 (6330). pp. 1211-1215.

2016

Colgan, Aoife M. and Kröger, Carsten and Diard, Médéric and Hardt, Wolf-Dietrich and Puente, José L. and Sivasankaran, Sathesh K. and Hokamp, Karsten and Hinton, Jay C. D.. (2016) The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar Typhimurium. PLoS genetics, 12 (8). e1006258.

Curkić, Ismeta and Schütz, Monika and Oberhettinger, Philipp and Diard, Médéric and Claassen, Manfred and Linke, Dirk and Hardt, Wolf-Dietrich. (2016) Epitope-Tagged Autotransporters as Single-Cell Reporters for Gene Expression by a Salmonella Typhimurium wbaP Mutant. PloS one, 11 (5). e0154828.

Moor, Kathrin and Wotzka, Sandra Y. and Toska, Albulena and Diard, Médéric and Hapfelmeier, Siegfried and Slack, Emma. (2016) Peracetic Acid Treatment Generates Potent Inactivated Oral Vaccines from a Broad Range of Culturable Bacterial Species. Frontiers in Immunology , 7 (34). pp. 1-14.

2015

Maier, Lisa and Diard, Médéric and Sellin, Mikael E. and Chouffane, Elsa-Sarah and Trautwein-Weidner, Kerstin and Periaswamy, Balamurugan and Slack, Emma and Dolowschiak, Tamas and Stecher, Bärbel and Loverdo, Claude and Regoes, Roland R. and Hardt, Wolf-Dietrich. (2015) Correction: Granulocytes Impose a Tight Bottleneck upon the Gut Luminal Pathogen Population during Salmonella Typhimurium Colitis. PLoS Pathogens, 11 (7). e1005047.

2014

Maier, Lisa and Diard, Médéric and Sellin, Mikael E. and Chouffane, Elsa-Sarah and Trautwein-Weidner, Kerstin and Periaswamy, Balamurugan and Slack, Emma and Dolowschiak, Tamas and Stecher, Bärbel and Loverdo, Claude and Regoes, Roland R. and Hardt, Wolf-Dietrich. (2014) Granulocytes impose a tight bottleneck upon the gut luminal pathogen population during Salmonella typhimurium colitis. PLoS Pathogens, 10 (12). e1004557.

Arnoldini, Markus and Vizcarra, Ima Avalos and Peña-Miller, Rafael and Stocker, Nicolas and Diard, Médéric and Vogel, Viola and Beardmore, Robert E. and Hardt, Wolf-Dietrich and Ackermann, Martin. (2014) Bistable expression of virulence genes in salmonella leads to the formation of an antibiotic-tolerant subpopulation. PLoS Biology, 12 (8). e1001928.

Diard, Médéric and Sellin, Mikael E. and Dolowschiak, Tamas and Arnoldini, Markus and Ackermann, Martin and Hardt, Wolf-Dietrich. (2014) Antibiotic treatment selects for cooperative virulence of Salmonella typhimurium. Current Biology, 24 (17). pp. 2000-2005.

Sellin, Mikael E. and Müller, Anna A. and Felmy, Boas and Dolowschiak, Tamas and Diard, Médéric and Tardivel, Aubry and Maslowski, Kendle M. and Hardt, Wolf-Dietrich. (2014) Epithelium-intrinsic NAIP/NLRC4 inflammasome drives infected enterocyte expulsion to restrict Salmonella replication in the intestinal mucosa. Cell Host & Microbe, 16 (2). pp. 237-248.

2013

Diard, Médéric and Garcia, Victor and Maier, Lisa and Remus-Emsermann, Mitja N. P. and Regoes, Roland R. and Ackermann, Martin and Hardt, Wolf-Dietrich. (2013) Stabilization of cooperative virulence by the expression of an avirulent phenotype. Nature, 494 (7437). pp. 353-356.

2012

Kaiser, Patrick and Diard, Médéric and Stecher, Bärbel and Hardt, Wolf-Dietrich. (2012) The streptomycin mouse model for Salmonella diarrhea: functional analysis of the microbiota, the pathogen's virulence factors, and the host's mucosal immune response. Immunological Reviews, 245 (1). pp. 56-83.

2010

Diard, Médéric and Garry, Louis and Selva, Marjorie and Mosser, Thomas and Denamur, Erick and Matic, Ivan. (2010) Pathogenicity-associated islands in extraintestinal pathogenic Escherichia coli are fitness elements involved in intestinal colonization. Journal of Bacteriology, 192 (19). pp. 4885-4893.

Tourret, Jérôme and Diard, Médéric and Garry, Louis and Matic, Ivan and Denamur, Erick. (2010) Effects of single and multiple pathogenicity island deletions on uropathogenic Escherichia coli strain 536 intrinsic extra-intestinal virulence. International Journal of Medical Microbiology : IJMM, 300 (7). pp. 435-439.

Baeriswyl, Simon and Diard, Médéric and Mosser, Thomas and Leroy, Magali and Manière, Xavier and Taddei, François and Matic, Ivan. (2010) Modulation of aging profiles in isogenic populations of Caenorhabditis elegans by bacteria causing different extrinsic mortality rates. Biogerontology, 11 (1). pp. 53-65.

2009

Touchon, Marie and Hoede, Claire and Tenaillon, Olivier and Barbe, Valérie and Baeriswyl, Simon and Bidet, Philippe and Bingen, Edouard and Bonacorsi, Stéphane and Bouchier, Christiane and Bouvet, Odile and Calteau, Alexandra and Chiapello, Hélène and Clermont, Olivier and Cruveiller, Stéphane and Danchin, Antoine and Diard, Médéric and Dossat, Carole and Karoui, Meriem El and Frapy, Eric and Garry, Louis and Ghigo, Jean Marc and Gilles, Anne Marie and Johnson, James and Le Bouguénec, Chantal and Lescat, Mathilde and Mangenot, Sophie and Martinez-Jéhanne, Vanessa and Matic, Ivan and Nassif, Xavier and Oztas, Sophie and Petit, Marie Agnès and Pichon, Christophe and Rouy, Zoé and Ruf, Claude Saint and Schneider, Dominique and Tourret, Jérôme and Vacherie, Benoit and Vallenet, David and Médigue, Claudine and Rocha, Eduardo P. C. and Denamur, Erick. (2009) Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genetics, 5 (1). e1000344.

2007

Diard, Médéric and Baeriswyl, Simon and Clermont, Olivier and Gouriou, Stéphanie and Picard, Bertrand and Taddei, François and Denamur, Erick and Matic, Ivan. (2007) Caenorhabditis elegans as a simple model to study phenotypic and genetic virulence determinants of extraintestinal pathogenic Escherichia coli. Microbes and Infection, 9 (2). pp. 214-223.