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Keller, Sebastian Mathias and Samarin, Maxim and Arend Torres, Fabricio and Wieser, Mario and Roth, Volker. (2021) Learning Extremal Representations with Deep Archetypal Analysis. International Journal of Computer Vision, 129 (4). pp. 805-820.

Zimmermann, Ronan and Fürer, Lukas and Schenk, Nathalie and Koenig, Julian and Roth, Volker and Schlüter-Müller, Susanne and Kaess, Michael and Schmeck, Klaus. (2021) Silence in the psychotherapy of adolescents with borderline personality pathology. Personality disorders, 12 (2). pp. 160-170.

Fürer, Lukas and Schenk, Nathalie and Roth, Volker and Steppan, Martin and Schmeck, Klaus and Zimmermann, Ronan. (2020) Supervised Speaker Diarization Using Random Forests: A Tool for Psychotherapy Process Research. Frontiers in Psychology, 11. p. 1726.

Samarin, Maxim and Zweifel, Lauren and Roth, Volker and Alewell, Christine. (2020) Identifying Soil Erosion Processes in Alpine Grasslands on Aerial Imagery with a U-Net Convolutional Neural Network. Remote sensing, 12 (24). p. 4149.

Parbhoo, Sonali and Wieser, Mario and Wieczorek, Aleksander and Roth, Volker. (2020) Information Bottleneck for Estimating Treatment Effects with Systematically Missing Covariates. Entropy, 22 (4). p. 389.

Thorball, Christian W. and Borghesi, Alessandro and Bachmann, Nadine and Von Siebenthal, Chantal and Vongrad, Valentina and Turk, Teja and Neumann, Kathrin and Beerenwinkel, Niko and Bogojeska, Jasmina and Roth, Volker and Kok, Yik Lim and Parbhoo, Sonali and Wieser, Mario and Böni, Jürg and Perreau, Matthieu and Klimkait, Thomas and Yerly, Sabine and Battegay, Manuel and Rauch, Andri and Schmid, Patrick and Bernasconi, Enos and Cavassini, Matthias and Kouyos, Roger D. and Günthard, Huldrych F. and Metzner, Karin J. and Fellay, Jacques and Swiss HIV Cohort Study, . (2020) Host Genomics of the HIV-1 Reservoir Size and Its Decay Rate During Suppressive Antiretroviral Treatment. Journal of Acquired Immune Deficiency Syndromes, 85 (4). pp. 517-524.

Wan, Chenjie and Bachmann, Nadine and Mitov, Venelin and Blanquart, François and Céspedes, Susana Posada and Turk, Teja and Neumann, Kathrin and Beerenwinkel, Niko and Bogojeska, Jasmina and Fellay, Jacques and Roth, Volker and Böni, Jürg and Perreau, Matthieu and Klimkait, Thomas and Yerly, Sabine and Battegay, Manuel and Walti, Laura and Calmy, Alexandra and Vernazza, Pietro and Bernasconi, Enos and Cavassini, Matthias and Metzner, Karin J. and Günthard, Huldrych F. and Kouyos, Roger D. and Swiss HIV Cohort Study, . (2020) Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART. Nature Communications, 11 (1). p. 5542.

Wieczorek, Aleksander and Roth, Volker. (2020) On the Difference between the Information Bottleneck and the Deep Information Bottleneck. Entropy, 22 (2). p. 131.

Keller, Sebastian M. and Gschwandtner, Ute and Meyer, Antonia and Chaturvedi, Menorca and Roth, Volker and Fuhr, Peter. (2020) Cognitive decline in Parkinson's disease is associated with reduced complexity of EEG at baseline. Brain Communications, 2 (2). fcaa207.

Kozak, Vitalii V. and Chaturvedi, Menorca and Gschwandtner, Ute and Hatz, Florian and Meyer, Antonia and Roth, Volker and Fuhr, Peter. (2020) EEG Slowing and Axial Motor Impairment Are Independent Predictors of Cognitive Worsening in a Three-Year Cohort of Patients With Parkinson's Disease. Frontiers in Aging Neuroscience, 12. p. 171.

Wieser, Mario and Parbhoo, Sonali and Wieczorek, Aleksander and Roth, Volker. (2020) Inverse Learning of Symmetries. In: Advances in Neural Information Processing Systems 33 (NeurIPS 2020). pp. 1-12.

Parbhoo, Sonali and Wieser, Mario and Roth, Volker and Doshi-Velez, Finale. (2020) Transfer Learning from Well-Curated to Less-Resourced Populations with HIV. In: Proceedings of the 5th Machine Learning for Healthcare Conference, 126. pp. 589-609.

Wu, Mike and Parbhoo, Sonali and Hughes, Michael C. and Kindle, Ryan and Celi, Leo A. and Zazzi, Maurizio and Roth, Volker and Doshi-Velez, Finale. (2020) Regional Tree Regularization for Interpretability in Deep Neural Networks. In: The Thirty-Fourth AAAI Conference on Artificial Intelligence, AAAI 2020, 34. pp. 6413-6421.

Chaturvedi, Menorca and Bogaarts, Jan Guy and Kozak Cozac, Vitalii V. and Hatz, Florian and Gschwandtner, Ute and Meyer, Antonia and Fuhr, Peter and Roth, Volker. (2019) Phase lag index and spectral power as QEEG features for identification of patients with mild cognitive impairment in Parkinson's disease. Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology, 130 (10). pp. 1937-1944.

Keller, Sebastian Mathias and Samarin, Maxim and Wieser, Mario and Roth, Volker. (2019) Deep Archetypal Analysis. In: Pattern Recognition. Cham, pp. 171-185.

Kortylewski, Adam and Wieczorek, Aleksander and Wieser, Mario and Blumer, Clemens and Parbhoo, Sonali and Morel-Forster, Andreas and Roth, Volker and Vetter, Thomas. (2019) Greedy Structure Learning of Hierarchical Compositional Models. In: IEEE Conference on Computer Vision and Pattern Recognition (CVPR). pp. 11612-11621.

Wieczorek, Aleksander and Roth, Volker. (2019) Information Theoretic Causal Effect Quantification. Entropy, 21 (10). p. 975.

Parbhoo, Sonali and Gottesman, Omer and Ross, Andrew Slavin and Komorowski, Matthieu and Faisal, Aldo and Bon, Isabella and Roth, Volker and Doshi-Velez, Finale. (2018) Improving counterfactual reasoning with kernelised dynamic mixing models. PloS one, 13 (11). e0205839.

Wu, Mike and Hughes, Michael C. and Parbhoo, Sonali and Zazzi, Maurizio and Roth, Volker and Doshi-Velez, Finale. (2018) Beyond Sparsity: Tree Regularization of Deep Models for Interpretability. In: Proceedings of the Thirty-Second AAAI Conference on Artificial Intelligence, (AAAI-18). pp. 1670-1678.

Wieser, Mario and Wieczorek, Aleksander and Murezzan, Damian and Roth, Volker. (2018) Learning Sparse Latent Representations with the Deep Copula Information Bottleneck. In: International Conference on Learning Representations.

Chaturvedi, M. and Hatz, F. and Gschwandtner, U. and Bogaarts, J. G. and Meyer, A. and Fuhr, P. and Roth., V.. (2017) Quantitative EEG (QEEG) Measures Differentiate Parkinson`s Disease Patients from Healthy Controls. Frontiers in Aging Neuroscience, 9 (3). p. 3.

Parbhoo, Sonali and Bogojeska, Jasmina and Zazzi, Maurizio and Roth, Volker and Doshi-Velez, Finale. (2017) Combining Kernel and Model Based Learning for HIV Therapy Selection. Amia Summits on Translational Science Proceedings, 2017. pp. 239-248.

Egger, Bernhard and Kaufmann, Dinu and Schönborn, Sandro and Roth, Volker and Vetter, Thomas. (2016) Copula Eigenfaces - Semiparametric Principal Component Analysis for Facial Appearance Modeling. In: Proceedings of the 11th Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISIGRAPP 2016). Cham, pp. 50-58.

Makowska, Zuzanna and Boldanova, Tujana and Adametz, David and Quagliata, Luca and Vogt, Julia E. and Dill, Michael T. and Matter, Mathias S. and Roth, Volker and Terracciano, Luigi and Heim, Markus H.. (2016) Gene expression analysis of biopsy samples reveals critical limitations of transcriptome-based molecular classifications of hepatocellular carcinoma. The Journal of Pathology : Clinical Research , 2 (2). pp. 80-92.

Kaufmann, Dinu and Parbhoo, Sonali and Wieczorek, Aleksander and Keller, Sebastian and Adametz, David and Roth, Volker . (2016) Bayesian Markov Blanket Estimation. In: Proceedings of the 19th International Conference on Artificial Intelligence and Statistics, AISTATS 2016, Cadiz, Spain, May 9-11, 2016, 51. pp. 333-341.

Vogt, JuliaE. and Kloft, Marius and Stark, Stefan and Raman, SudhirS. and Prabhakaran, Sandhya and Roth, Volker and Ratsch, Gunnar. (2015) Probabilistic clustering of time-evolving distance data. Machine learning, Vol. 100, H. 2-3. pp. 635-654.

Alewell, Christine and Meusburger, Katrin and Kandl, Daniela and Fetai, Ilir and Roth, Volker and Rugolo, Valentino and Schuldt, Heiko and Vetter, Thomas. (2015) COSA – AlpErosion: Monitoring the degradation of Alpine soils with COSA, a Citizens’ Observatory Smartphone App. (36). pp. 19-22. Wädenswil .

Kaufmann, Dinu and Keller, Sebastian and Roth, Volker. (2015) Copula Archetypal Analysis. In: Pattern Recognition. pp. 117-128.

Dill, Michael T. and Makowska, Zuzanna and Trincucci, Gaia and Gruber, Andreas J. and Vogt, Julia E. and Filipowicz, Magdalena and Calabrese, Diego and Krol, Ilona and Lau, Daryl T. and Terracciano, Luigi and van Nimwegen, Erik and Roth, Volker and Heim, Markus H.. (2014) Pegylated IFN-α regulates hepatic gene expression through transient Jak/STAT activation. Journal of Clinical Investigation, Vol. 124, H. 4. pp. 1568-1581.

Bousleiman, Habib and Zimmermann, Ronan and Ahmed, Shaheen and Hardmeier, Martin and Hatz, Florian and Schindler, Christian and Roth, Volker and Gschwandtner, Ute and Fuhr, Peter. (2014) Power spectra for screening parkinsonian patients for mild cognitive impairment. Annals of clinical and translational neurology, Vol. 1, H. 11. pp. 884-890.

Giallonardo, Francesca Di and Töpfer, Armin and Rey, Melanie and Prabhakaran, Sandhya and Duport, Yannick and Leemann, Christine and Schmutz, Stefan and Campbell, Nottania K. and Joos, Beda and Lecca, Maria Rita and Patrignani, Andrea and Däumer, Martin and Beisel, Christian and Rusert, Peter and Trkola, Alexandra and Günthard, Huldrych F. and Roth, Volker and Beerenwinkel, Niko and Metzner, Karin J.. (2014) Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations. Nucleic Acids Research, 42 (14). e115.

Prabhakaran, Sandhya and Rey, Melanie and Zagordi, Osvaldo and Beerenwinkel, Niko and Roth, Volker. (2014) HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model. IEEE/ACM transactions on computational biology and bioinformatics, Vol. 1, H. 1. pp. 182-191.

Adametz, David and Rey, Melanie and Roth, Volker. (2014) Information Bottleneck for Pathway-Centric Gene Expression Analysis. In: Pattern recognition: 36th German Conference. Cham, pp. 81-91.

Rey, Melani and Roth, Volker and Fuchs, Thomas. (2014) Sparse meta-Gaussian information bottleneck. In: Proceedings of the 31st International Conference on Machine Learning (ICML 2014). Red Hook, NY, pp. 910-918.

Adametz, David and Roth, Volker. (2014) Distance-based network recovery under feature correlation. In: Advances in neural information processing systems, 27. Cambridge (Mass.), pp. 775-783.

Rey, Melanie Rey and Roth, Volker. (2013) Meta-Gaussian information bottleneck. In: Advances in neural information processing systems, 25. Cambridge (Mass.), pp. 1925-1933.

Wigger, Leonore and Vogt, Julia E. and Roth, Volker. (2013) Malaria haplotype frequency estimation. Statistics in medicine, Vol. 32, H. 21. pp. 3737-3751.

Töpfer, Armin and Zagordi, Osvaldo and Prabhakaran, Sandhya and Roth, Volker and Halperin, Eran and Beerenwinkel, Niko. (2013) Probabilistic inference of viral quasispecies subject to recombination. Journal of computational biology, Vol. 20, H. 2. pp. 113-123.

Prabhakaran, Sandhya and Adametz, David and Metzner, KarinJ. and Boehm, Alexander and Roth, Volker. (2013) Recovering networks from distance data. Machine learning, Vol. 92, H. 2-3. pp. 251-283.

Meyer, Stefanie and Fuchs, Thomas J. and Bosserhoff, Anja K. and Hofstädter, Ferdinand and Pauer, Armin and Roth, Volker and Buhmann, Joachim M. and Moll, Ingrid and Anagnostou, Nikos and Brandner, Johanna M. and Ikenberg, Kristian and Moch, Holger and Landthaler, Michael and Vogt, Thomas and Wild, Peter J.. (2012) A seven-marker signature and clinical outcome in malignant melanoma : a large-scale tissue-microarray study with two independent patient cohorts. PLoS ONE, Vol. 7, H. 6 , e38222.

Beerenwinkel, Niko and Günthard, Huldrych F. and Roth, Volker and Metzner, Karin J.. (2012) Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data. Frontiers in microbiology, Vol. 3, H. 329.

Prabhakaran, Sandhya and Metzner, Karin J. and Boehm, Alexander and Roth, Volker. (2012) Recovering Networks from Distance Data. Journal of machine learning research, Vol. 25. pp. 349-364.

Raman, Sudhir and Roth, Volker. (2012) Sparse point estimation for Bayesian regression via simulated annealing. In: Pattern recognition : joint 34th DAGM and 36th OAGM Symposium. Springer, pp. 317-326.

Melanie, Rey and Roth, Volker. (2012) Copula mixture model for eependency-seeking clustering. In: 29th International Conference on Machine Learning (ICML 2012), 8 S.. Edinburgh.

Vogt, Julia and Roth, Volker. (2012) A complete analysis of the l_1,p Group-Lasso. In: 29th International Conference on Machine Learning (ICML 2012), 8 S.. Edinburgh.

Zagordi, Osvaldo and Töpfer, Armin and Prabhakaran, Sandhya and Roth, Volker and Halperin, Eran and Beerenwinkel, Niko. (2012) Probabilistic inference of viral quasispecies subject to recombination. In: Research in Computational Molecular Biology. Berlin, pp. 342-354.

Prabhakaran, Sandhya and Raman, Sudhir and Vogt, Julia and Roth, Volker. (2012) Automatic model selection in archetype analysis. In: Pattern recognition : joint 34th DAGM and 36th OAGM Symposium. Springer, pp. 458-467.

Adametz, David and Roth, Volker. (2011) Bayesian Partitioning of Large-Scale Distance Data. In: Advances in Neural Information Processing Systems 24, 9 S.. Red Hook, NY.

Grussenmeyer, T. and Meili-Butz, S. and Roth, V. and Dieterle, T. and Brink, M. and Winkler, B. and Matt, P. and Carrel, T. P. and Eckstein, F. S. and Lefkovits, I. and Grapow, M. T.. (2011) Proteome analysis in cardiovascular pathophysiology using Dahl rat model. Journal of proteomics, Vol. 74, H. 5. pp. 672-682.

Boehm, A.. (2010) Second Messenger-Mediated Adjustment of Bacterial Swimming Velocity. Cell, Vol. 141, H. 1. pp. 107-116.

Zagordi, Osvaldo and Geyrhofer, Lukas and Roth, Volker and Beerenwinkel, Niko. (2010) Deep sequencing of a genetically heterogeneous sample : local haplotype reconstruction and read error correction. Journal of computational biology, Vol. 17, H. 3. pp. 417-428.

Vogt, J. E. and Prabhakaran, S. and Fuchs, T. J. and Roth, V.. (2010) The translation-invariant wishart-dirichlet process for clustering distance data. In: ICML 2010: Proceedings of the 27th international conference on Machine Learning.. International Machine Learning Society, pp. 1111-1118.

Julia E. Vogt, and Volker Roth, . (2010) The Group-Lasso: ℓ1, ∞  Regularization versus ℓ1,2 Regularization. In: Pattern Recognition : 32nd DAGM Symposium, Darmstadt, Germany, September 22-24, 2010. Proceedings. Berlin, Heidelberg, pp. 252-261.

Raman, Sudhir and Fuchs, Thomas and Wild, Peter and Dahl, Edgar and Buhmann, Joachim and Roth, Volker. (2010) Infinite mixture-of-experts model for sparse survival regression with application to breast cancer. BMC Bioinformatics, Vol. 11, Suppl 8 , S8.

Dill, M. T. and Duong, F. H. and Vogt, J. E. and Bibert, S. and Bochud, P. Y. and Terracciano, L. and Papassotiropoulos, A. and Roth, V. and Heim, M. H.. (2010) Interferon-Induced Gene Expression Is a Stronger Predictor of Treatment Response than IL28B Genotype in Patients with Hepatitis C. Gastroenterology, Vol. 140, H. 3 , S. 1021–1031.

Peter J. Schüffler, and Thomas J. Fuchs, and Cheng Soon Ong, and Volker Roth, and Joachim M. Buhmann, . (2010) Computational TMA analysis and cell nucleus classification of renal cell carcinoma. In: Pattern Recognition : 32nd DAGM Symposium, Darmstadt, Germany, September 22-24, 2010. Proceedings. Berlin, pp. 202-211.

Osvaldo Zagordi, and Lukas Geyrhofer, and Volker Roth, and Niko Beerenwinkel, . (2009) Deep Sequencing of a Genetically Heterogeneous Sample : Local Haplotype Reconstruction and Read Error Correction. In: Research in Computational Molecular Biology. Berlin, Heidelberg, pp. 271-284.

Sudhir Raman, and Volker Roth, . (2009) Sparse Bayesian Regression for Grouped Variables in Generalized Linear Models. In: Pattern Recognition : 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings. Berlin, Heidelberg, pp. 242-251.

Wild, Peter J. and Fuchs, Thomas and Stoehr, Robert and Zimmermann, Dieter and Frigerio, Simona and Padberg, Barbara and Steiner, Inbal and Zwarthoff, Ellen C. and Burger, Maximilian and Denzinger, Stefan and Hofstaedter, Ferdinand and Kristiansen, Glen and Hermanns, Thomas and Seifert, Hans-Helge and Provenzano, Maurizio and Sulser, Tullio and Roth, Volker and Buhmann, Joachim M. and Moch, Holger and Hartmann, Arndt. (2009) Detection of urothelial bladder cancer cells in voided urine can be improved by a combination of cytology and standardized microsatellite analysis. Cancer epidemiology biomarkers & prevention, Vol. 18, H. 6. pp. 1798-1806.

Bernd Fischer, and Volker Roth, and Joachim M. Buhmann, . (2009) Adaptive bandwidth selection for biomarker discovery in mass spectrometry. Artificial Intelligence in Medicine, Vol. 45, H. 2-3. pp. 207-214.

Sudhir Raman, and Thomas J. Fuchs, and Peter J. Wild, and Edgar Dahl, and Volker Roth, . (2009) The Bayesian group-Lasso for analyzing contingency tables. In: Proceedings of the 26 th International Conference on Machine Learning : Montréal, Canada, June 14 - 18, 2009. Madison, pp. 881-888.