Browse by Basel Contributors ID

Karthikeyan, Chockalingam and Patil, Basavaprabhu L. and Borah, Basanta K. and Resmi, Thulasi R. and Turco, Silvia and Pooggin, Mikhail M. and Hohn, Thomas and Veluthambi, Karuppannan. (2016) Emergence of a Latent Indian Cassava Mosaic Virus from Cassava Which Recovered from Infection by a Non-Persistent Sri Lankan Cassava Mosaic Virus. Viruses, 8 (10). p. 264.

Seguin, Jonathan and Otten, Patricia and Baerlocher, Loïc and Farinelli, Laurent and Pooggin, Mikhail M.. (2016) MISIS-2: A bioinformatics tool for in-depth analysis of small RNAs and representation of consensus master genome in viral quasispecies. Journal of Virological Methods, 233. pp. 37-40.

Fuentes, Alejandro and Carlos, Natacha and Ruiz, Yoslaine and Callard, Danay and Sánchez, Yadira and Ochagavía, María Elena and Seguin, Jonathan and Malpica-López, Nachelli and Hohn, Thomas and Lecca, Maria Rita and Pérez, Rosabel and Doreste, Vivian and Rehrauer, Hubert and Farinelli, Laurent and Pujol, Merardo and Pooggin, Mikhail M.. (2016) Field Trial and Molecular Characterization of RNAi-Transgenic Tomato Plants That Exhibit Resistance to Tomato Yellow Leaf Curl Geminivirus. Molecular Plant-Microbe Interactions, 29 (3). pp. 197-209.

Seguin, Jonathan and Otten, Patricia and Baerlocher, Loic and Farinelli, Laurent and Pooggin, Mikhail M.. (2014) MISIS: A bioinformatics tool to view and analyze maps of small RNAs derived from viruses and genomic loci generating multiple small RNAs. Journal of virological methods, Vol. 195. pp. 120-122.

Seguin, Jonathan and Rajeswaran, Rajendran and Malpica-López, Nachelli and Martin, Robert R. and Kasschau, Kristin and Dolja, Valerian V. and Otten, Patricia and Farinelli, Laurent and Pooggin, Mikhail M.. (2014) De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs. PLoS ONE, Vol. 9, H. 2 , e88513.

Rajeswaran, Rajendran and Seguin, Jonathan and Chabannes, Matthieu and Duroy, Pierre-Olivier and Laboureau, Nathalie and Farinelli, Laurent and Iskra-Caruana, Marie-Line and Pooggin, Mikhail. (2014) Evasion of siRNA-directed antiviral silencing in Musa acuminata persistently infected with six distinct banana streak pararetroviruses. Journal of virology, Vol. 88, H. 19. pp. 11516-11528.

Rajeswaran, Rajendran and Golyaev, Victor and Seguin, Jonathan and Zvereva, Anna S. and Farinelli, Laurent and Pooggin, Mikhail M.. (2014) Interactions of rice tungro bacilliform pararetrovirus and its protein P4 with plant RNA silencing machinery. Molecular plant-microbe interactions, Vol. 27, H. 12. pp. 1370-1378.

Rajeswaran, Rajendran and Seguin, Jonathan and Chabannes, Matthieu and Duroy, Pierre-Olivier and Laboureau, Nathalie and Farinelli, Laurent and Iskra-Caruana, Marie-Line and Pooggin, Mikhail M.. (2014) Evasion of Short Interfering RNA-Directed Antiviral Silencing in Musa acuminata Persistently Infected with Six Distinct Banana Streak Pararetroviruses. Journal of virology, Vol. 88, H. 19. pp. 11516-11528.

Pooggin, Mikhail. (2013) How can plant DNA viruses evade siRNA-directed DNA methylation and silencing? International journal of molecular sciences, Vol. 14, H. 8. pp. 15233-15259.

Aregger, M. and Borah, B. K. and Seguin, J. and Rajeswaran, R. and Gubaeva, E. G. and Zvereva, A. S. and Windels, D. and Vazquez, F. and Blevins, T. and Farinelli, L. and Pooggin, M. M.. (2012) Primary and secondary siRNAs in geminivirus-induced gene silencing. PLoS Pathogens, Vol. 8, H. 9 , e1002941.

Rajeswaran, R. and Pooggin, M. M.. (2012) RDR6-mediated synthesis of complementary RNA is terminated by miRNA stably bound to template RNA. Nucleic Acids Research, 40 (2). pp. 594-599.

Pooggin, M. M. and Rajeswaran, R. and Schepetilnikov, M. V. and Ryabova, L. A.. (2012) Short ORF-dependent ribosome shunting operates in an RNA picorna-like Virus and a DNA pararetrovirus that cause rice tungro disease. PLoS Pathogens, Vol. 8, H. 3 , e1002568.

Rajeswaran, R. and Aregger, M. and Zvereva, A. S. and Borah, B. K. and Gubaeva, E. G. and Pooggin, M. M.. (2012) Sequencing of RDR6-dependent double-stranded RNAs reveals novel features of plant siRNA biogenesis. Nucleic Acids Research, 40 (13). pp. 6241-6254.

Rajeswaran, Rajendran and Pooggin, Mikhail. (2012) Role of virus-derived small RNAs in plant antiviral defense : insights from DNA viruses. In: MicroRNAs in Plant development and Stress Response. Berlin, Heidelberg, pp. 261-289.

Zvereva, Anna S. and Pooggin, Mikhail M.. (2012) Silencing and innate immunity in plant defense against viral and non-viral pathogens. Viruses, Vol. 4, H. 11. pp. 2578-2597.

Hu, Q. A. and Hollunder, J. and Niehl, A. and Korner, C. J. and Gereige, D. and Windels, D. and Arnold, A. and Kuiper, M. and Vazquez, F. and Pooggin, M. and Heinlein, M.. (2011) Specific impact of tobamovirus infection on the Arabidopsis small RNA profile. PLoS ONE, Vol. 6, H. 5 , e19549.

Blevins, T. and Rajeswaran, R. and Aregger, M. and Borah, B. K. and Schepetilnikov, M. and Baerlocher, L. and Farinelli, L. and Meins, F. and Hohn, T. and Pooggin, M. M.. (2011) Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense. Nucleic Acids Research, 39 (12). pp. 5003-5014.

Esfandiari, N. and Kohi-Habibi, M. and Hohn, T. and Pooggin, M. M.. (2009) Complete genome sequence of an Iranian isolate of Potato virus X from the legume plant Pisum sativum. Virus genes, Vol. 39, H. 1. pp. 141-145.

Pooggin, Mikhail M. and Fütterer, Johannes and Hohn, Thomas. (2008) Cross-species functionality of pararetroviral elements driving ribosome shunting. PLoS ONE, Vol. 3, H. 2 , e1650.

Shivaprasad, Padubidri V. and Rajeswaran, Rajendran and Blevins, Todd and Schoelz, James and Meins, Frederick and Hohn, Thomas and Pooggin, Mikhail M.. (2008) The CaMV transactivator/viroplasmin interferes with RDR6-dependent trans-acting and secondary siRNA pathways in Arabidopsis. Nucleic Acids Research, 36 (18). pp. 5896-5909.

Rajeswaran, Rajendran and Sunitha, Sukumaran and Shivaprasad, Padubidri V. and Pooggin, Mikhail M. and Hohn, Thomas and Veluthambi, Karuppannan. (2007) The mungbean yellow mosaic begomovirus transcriptional activator protein transactivates the viral promoter-driven transgene and causes toxicity in transgenic tobacco plants. Molecular plant-microbe interactions, Vol. 20, H. 12. pp. 1545-1554.

Vanderschuren, Hervé and Akbergenov, Rashid and Pooggin, Mikhail M. and Hohn, Thomas and Gruissem, Wilhelm and Zhang, Peng. (2007) Transgenic cassava resistance to African cassava mosaic virus is enhanced by viral DNA-A bidirectional promoter-derived siRNAs. Plant molecular biology, Vol. 64, H. 5. pp. 549-557.

Ryabova, Lyubov A. and Pooggin, Mikhail M. and Hohn, Thomas. (2006) Translation reinitiation and leaky scanning in plant viruses. Virus research, Vol. 119, H. 1. pp. 52-62.

Akbergenov, Rashid and Si-Ammour, Azeddine and Blevins, Todd and Amin, Imran and Kutter, Claudia and Vanderschuren, Herve and Zhang, Peng and Gruissem, Wilhelm and Meins, Frederick and Hohn, Thomas and Pooggin, Mikhail M.. (2006) Molecular characterization of geminivirus-derived small RNAs in different plant species. Nucleic Acids Research, 34 (2). pp. 462-471.

Pooggin, Mikhail M. and Ryabova, Lyubov A. and He, Xiaoyuan and Fütterer, Johannes and Hohn, Thomas. (2006) Mechanism of ribosome shunting in Rice tungro bacilliform pararetrovirus. RNA, Vol. 12, H. 5. pp. 841-850.

Blevins, Todd and Rajeswaran, Rajendran and Shivaprasad, Padubidri V. and Beknazariants, Daria and Si-Ammour, Azeddine and Park, Hyun-Sook and Vazquez, Franck and Robertson, Dominique and Meins, Frederick and Hohn, Thomas and Pooggin, Mikhail M.. (2006) Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Research, 34 (21). pp. 6233-6246.

Geering, A. D. W. and Pooggin, M. M. and Olszewski, N. E. and Lockhart, B. E. L. and Thomas, J. E.. (2005) Characterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa. Archives of virology, Vol. 150, H. 4. pp. 787-796.

Trinks, Daniela and Rajeswaran, R. and Shivaprasad, P. V. and Akbergenov, Rashid and Oakeley, Edward J. and Veluthambi, K. and Hohn, Thomas and Pooggin, Mikhail M.. (2005) Suppression of RNA silencing by a geminivirus nuclear protein, AC2, correlates with transactivation of host genes. Journal of virology, Vol. 79, H. 4. pp. 2517-2527.

Shivaprasad, P. V. and Akbergenov, Rashid and Trinks, Daniela and Rajeswaran, R. and Veluthambi, K. and Hohn, Thomas and Pooggin, Mikhail M.. (2005) Promoters, transcripts, and regulatory proteins of Mungbean yellow mosaic geminivirus. Journal of virology, Vol. 79, H. 13. pp. 8149-8163.

Pooggin, Mikhail and Hohn, Thomas. (2004) Fighting geminiviruses by RNAi and vice versa. Plant molecular biology, Vol. 55, H. 2. pp. 149-152.

Hohn, T. and Park, H. S. and Guerra-Peraza, O. and Stavolone, L. and Pooggin, M. M. and Kobayashi, K. and Ryabova, L. A.. (2001) Shunting and controlled reinitiation: the encounter of cauliflower mosaic virus with the translational machinery. Cold Spring Harbor Symposia on Quantitative Biology, 66. pp. 269-276.