Items where Author is "Hodcroft, Emma B."

Yes

Hodcroft, Emma B. and Dyrdak, Robert and Andrés, Cristina and Egli, Adrian and Reist, Josiane and García Martínez de Artola, Diego and Alcoba-Flórez, Julia and Niesters, Hubert G. M. and Antón, Andrés and Poelman, Randy and Reynders, Marijke and Wollants, Elke and Neher, Richard A. and Albert, Jan. (2022) Evolution, geographic spreading, and demographic distribution of Enterovirus D68. PLoS Pathogens, 18 (5). e1010515.

Reichmuth, Martina L. and Hodcroft, Emma B. and Riou, Julien and Neher, Richard A. and Hens, Niel and Althaus, Christian L.. (2022) Impact of cross-border-associated cases on the SARS-CoV-2 epidemic in Switzerland during summer 2020 and 2021. Epidemics, 41. p. 100654.

Huddleston, John and Hadfield, James and Sibley, Thomas R. and Lee, Jover and Fay, Kairsten and Ilcisin, Misja and Harkins, Elias and Bedford, Trevor and Neher, Richard A. and Hodcroft, Emma B.. (2021) Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens. Journal of Open Source Software, 6 (57). p. 4.

Dyrdak, Robert and Hodcroft, Emma B. and Wahlund, Martina and Neher, Richard A. and Albert, Jan. (2021) Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020. Journal of clinical virology, 136 (March). p. 104754.

Vogels, Chantal B. F. and Breban, Mallery I. and Ott, Isabel M. and Alpert, Tara and Petrone, Mary E. and Watkins, Anne E. and Kalinich, Chaney C. and Earnest, Rebecca and Rothman, Jessica E. and Goes de Jesus, Jaqueline and Morales Claro, Ingra and Magalhães Ferreira, Giulia and Crispim, Myuki A. E. and Brazil-UK Cadde Genomic Network, and Singh, Lavanya and Tegally, Houriiyah and Anyaneji, Ugochukwu J. and Network for Genomic Surveillance in South Africa, and Hodcroft, Emma B. and Mason, Christopher E. and Khullar, Gaurav and Metti, Jessica and Dudley, Joel T. and MacKay, Matthew J. and Nash, Megan and Wang, Jianhui and Liu, Chen and Hui, Pei and Murphy, Steven and Neal, Caleb and Laszlo, Eva and Landry, Marie L. and Muyombwe, Anthony and Downing, Randy and Razeq, Jafar and de Oliveira, Tulio and Faria, Nuno R. and Sabino, Ester C. and Neher, Richard A. and Fauver, Joseph R. and Grubaugh, Nathan D.. (2021) Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2. PLoS Biology, 19 (5). e3001236.

Aksamentov, Ivan and Roemer, Cornelius and Hodcroft, Emma B. and Neher, Richard A.. (2021) Nextclade: clade assignment, mutation calling and quality control for viral genomes. Journal of Open Source Software, 6 (67). p. 3773.

Goncalves Cabecinhas, Ana Rita and Roloff, Tim and Stange, Madlen and Bertelli, Claire and Huber, Michael and Ramette, Alban and Chen, Chaoran and Nadeau, Sarah and Gerth, Yannick and Yerly, Sabine and Opota, Onya and Pillonel, Trestan and Schuster, Tobias and Metzger, Cesar M. J. A. and Sieber, Jonas and Bel, Michael and Wohlwend, Nadia and Baumann, Christian and Koch, Michel C. and Bittel, Pascal and Leuzinger, Karoline and Brunner, Myrta and Suter-Riniker, Franziska and Berlinger, Livia and Søgaard, Kirstine K. and Beckmann, Christiane and Noppen, Christoph and Redondo, Maurice and Steffen, Ingrid and Seth-Smith, Helena M. B. and Mari, Alfredo and Lienhard, Reto and Risch, Martin and Nolte, Oliver and Eckerle, Isabella and Martinetti Lucchini, Gladys and Hodcroft, Emma B. and Neher, Richard A. and Stadler, Tanja and Hirsch, Hans H. and Leib, Stephen L. and Risch, Lorenz and Kaiser, Laurent and Trkola, Alexandra and Greub, Gilbert and Egli, Adrian. (2021) SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing. Microorganisms, 9 (4). p. 9040677.

Hodcroft, Emma B. and Zuber, Moira and Nadeau, Sarah and Vaughan, Timothy G. and Crawford, Katharine H. D. and Althaus, Christian L. and Reichmuth, Martina L. and Bowen, John E. and Walls, Alexandra C. and Corti, Davide and Bloom, Jesse D. and Veesler, David and Mateo, David and Hernando, Alberto and Comas, Iñaki and González-Candelas, Fernando and SeqCovid-Spain consortium, and Stadler, Tanja and Neher, Richard A.. (2021) Spread of a SARS-CoV-2 variant through Europe in the summer of 2020. Nature, 595 (7869). pp. 707-712.

Midgley, Sofie Elisabeth and Benschop, Kimberley and Dyrdak, Robert and Mirand, Audrey and Bailly, Jean-Luc and Bierbaum, Sibylle and Buderus, Stefan and Böttcher, Sindy and Eis-Hübinger, Anna-Maria and Hönemann, Mario and Jensen, Veronika Vorobieva and Hartling, Ulla Birgitte and Henquell, Cécile and Panning, Marcus and Thomsen, Marianne Kragh and Hodcroft, Emma B. and Meijer, Adam. (2020) Co-circulation of enterovirus D68 subclades, including a novel B3 cluster, across Europe in a season of expected low prevalence, 2019/20. Eurosurveillance, 25 (2). p. 1900749.

Fauver, Joseph R. and Petrone, Mary E. and Hodcroft, Emma B. and Shioda, Kayoko and Ehrlich, Hanna Y. and Watts, Alexander G. and Vogels, Chantal B. F. and Brito, Anderson F. and Alpert, Tara and Muyombwe, Anthony and Razeq, Jafar and Downing, Randy and Cheemarla, Nagarjuna R. and Wyllie, Anne L. and Kalinich, Chaney C. and Ott, Isabel M. and Quick, Joshua and Loman, Nicholas J. and Neugebauer, Karla M. and Greninger, Alexander L. and Jerome, Keith R. and Roychoudhury, Pavitra and Xie, Hong and Shrestha, Lasata and Huang, Meei-Li and Pitzer, Virginia E. and Iwasaki, Akiko and Omer, Saad B. and Khan, Kamran and Bogoch, Isaac I. and Martinello, Richard A. and Foxman, Ellen F. and Landry, Marie L. and Neher, Richard A. and Ko, Albert I. and Grubaugh, Nathan D.. (2020) Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States. Cell, 181 (5). pp. 990-996.e5.

Bedford, Trevor and Greninger, Alexander L. and Roychoudhury, Pavitra and Starita, Lea M. and Famulare, Michael and Huang, Meei-Li and Nalla, Arun and Pepper, Gregory and Reinhardt, Adam and Xie, Hong and Shrestha, Lasata and Nguyen, Truong N. and Adler, Amanda and Brandstetter, Elisabeth and Cho, Shari and Giroux, Danielle and Han, Peter D. and Fay, Kairsten and Frazar, Chris D. and Ilcisin, Misja and Lacombe, Kirsten and Lee, Jover and Kiavand, Anahita and Richardson, Matthew and Sibley, Thomas R. and Truong, Melissa and Wolf, Caitlin R. and Nickerson, Deborah A. and Rieder, Mark J. and Englund, Janet A. and Seattle Flu Study Investigators, and Hadfield, James and Hodcroft, Emma B. and Huddleston, John and Moncla, Louise H. and Müller, Nicola F. and Neher, Richard A. and Deng, Xianding and Gu, Wei and Federman, Scot and Chiu, Charles and Duchin, Jeffrey S. and Gautom, Romesh and Melly, Geoff and Hiatt, Brian and Dykema, Philip and Lindquist, Scott and Queen, Krista and Tao, Ying and Uehara, Anna and Tong, Suxiang and MacCannell, Duncan and Armstrong, Gregory L. and Baird, Geoffrey S. and Chu, Helen Y. and Shendure, Jay and Jerome, Keith R.. (2020) Cryptic transmission of SARS-CoV-2 in Washington state. Science, 370 (6516). pp. 571-575.

Alm, Erik and Broberg, Eeva K. and Connor, Thomas and Hodcroft, Emma B. and Komissarov, Andrey B. and Maurer-Stroh, Sebastian and Melidou, Angeliki and Neher, Richard A. and O'Toole, Áine and Pereyaslov, Dmitriy. (2020) Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. Eurosurveillance, 25 (32). p. 2001410.

Neher, Richard A. and Dyrdak, Robert and Druelle, Valentin and Hodcroft, Emma B. and Albert, Jan. (2020) Potential impact of seasonal forcing on a SARS-CoV-2 pandemic. Swiss Medical Weekly, 150. w20224.

Dyrdak, Robert and Mastafa, Monika and Hodcroft, Emma B. and Neher, Richard A. and Albert, Jan. (2019) Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing. Virus Evolution, 5 (1). vez007.