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Berki, Bianka and Sacher, Fabio and Fages, Antoine and Tschopp, Patrick and Luxey, Maëva. (2023) A method to investigate muscle target-specific transcriptional signatures of single motor neurons. Developmental Dynamics, 252. pp. 208-219.


Feregrino, Christian and Tschopp, Patrick. (2021) Assessing evolutionary and developmental transcriptome dynamics in homologous cell types. Developmental Dynamics. pp. 1-18.

Sacher, Fabio and Feregrino, Christian and Tschopp, Patrick and Ewald, Collin. (2021) Extracellular matrix gene expression signatures as cell type and cell state identifiers. Matrix Biol Plus, 10. pp. 1-14.


Luxey, Maëva and Berki, Bianka and Heusermann, Wolf and Fischer, Sabrina and Tschopp, Patrick. (2020) Development of the chick wing and leg neuromuscular systems and their plasticity in response to changes in digit numbers. Developmental Biology, 458 (2). pp. 133-140.


Grall, Emmanuelle and Tschopp, Patrick. (2019) A sense of place, many times over - pattern formation and evolution of repetitive morphological structures. Developmental Dynamics, 249 (3). pp. 313-327.

Darbellay, Fabrice and Bochaton, Célia and Lopez-Delisle, Lucille and Mascrez, Bénédicte and Tschopp, Patrick and Delpretti, Saskia and Zakany, Jozsef and Duboule, Denis. (2019) The constrained architecture of mammalian Hox gene clusters. Proceedings of the National Academy of Sciences, 116 (27). pp. 13424-13433.

Feregrino, Christian and Sacher, Fabio and Parnas, Oren and Tschopp, Patrick. (2019) A single-cell transcriptomic atlas of the developing chicken limb. BMC Genomics, 20 (1). p. 401.


Tschopp, Patrick and Tabin, Clifford J.. (2017) Deep homology in the age of next-generation sequencing. Philosophical Transactions B: Biological Sciences, 372 (1713). pp. 1-7.

Hiscock, Tom W. and Tschopp, Patrick and Tabin, Clifford J.. (2017) On the Formation of Digits and Joints during Limb Development. Developmental Cell, 41 (5). pp. 459-465.

Marin, Ray and Cortez, Diego and Lamanna, Francesco and Pradeepa, Madapura M. and Leushkin, Evgeny and Julien, Philippe and Liechti, Angélica and Halbert, Jean and Brüning, Thoomke and Mössinger, Katharina and Trefzer, Timo and Conrad, Christian and Kerver, Halie N. and Wade, Juli and Tschopp, Patrick and Kaessmann, Henrik. (2017) Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage. Genome Research, 27. pp. 1974-1987.

Tschopp, Patrick. (2017) Wie wird der Hals der Giraffe so lang? In: natura obscura. 200 Naturforschende - 200 Naturphänomene - 200 Jahre Naturforschende Gesellschaft in Basel. Basel, p. 205.