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Article

Anglada-Girotto, Miquel and Handschin, Gabriel and Ortmayr, Karin and Campos, Adrian I. and Gillet, Ludovic and Manfredi, Pablo and Mulholland, Claire V. and Berney, Michael and Jenal, Urs and Picotti, Paola and Zampieri, Mattia. (2022) Combining CRISPRi and metabolomics for functional annotation of compound libraries. Nature Chemical Biology, 18 (5). pp. 482-491.

Fuentes, Diego Antonio Fernandez and Manfredi, Pablo and Jenal, Urs and Zampieri, Mattia. (2021) Pareto optimality between growth-rate and lag-time couples metabolic noise to phenotypic heterogeneity in Escherichia coli. Nature Communications, 12. p. 3204.

Laventie, Benoît-Joseph and Sangermani, Matteo and Estermann, Fabienne and Manfredi, Pablo and Planes, Rémi and Hug, Isabelle and Jaeger, Tina and Meunier, Etienne and Broz, Petr and Jenal, Urs. (2019) A surface-induced asymmetric program promotes tissue colonization by Pseudomonas aeruginosa. Cell host & microbe, 25 (1). pp. 140-152.E6.

Nesper, Jutta and Hug, Isabelle and Kato, Setsu and Hee, Chee-Seng and Habazettl, Judith Maria and Manfredi, Pablo and Grzesiek, Stephan and Schirmer, Tilman and Emonet, Thierry and Jenal, Urs. (2017) Cyclic di-GMP differentially tunes a bacterial flagellar motor through a novel class of CheY-like regulators. eLife, 6. e28842.

Harms, Alexander and Segers, Francisca H. I. D. and Quebatte, Maxime and Mistl, Claudia and Manfredi, Pablo and Körner, Jonas and Chomel, Bruno B. and Kosoy, Michael and Maruyama, Soichi and Engel, Philipp and Dehio, Christoph. (2017) Evolutionary Dynamics of Pathoadaptation Revealed by Three Independent Acquisitions of the VirB/D4 Type IV Secretion System in Bartonella. Genome biology and evolution, 9 (3). pp. 761-776.

Trebosc, Vincent and Gartenmann, Sarah and Royet, Kevin and Manfredi, Pablo and Tötzl, Marcus and Schellhorn, Birgit and Pieren, Michel and Tigges, Marcel and Lociuro, Sergio and Sennhenn, Peter C. and Gitzinger, Marc and Bumann, Dirk and Kemmer, Christian. (2016) A novel genome editing platform for drug resistant Acinetobacter baumannii revealed an AdeR-unrelated tigecycline resistance mechanism. Antimicrobial Agents and Chemotherapy, 60 (12). pp. 7263-7271.

Manfredi, Pablo and Jenal, Urs. (2015) Bacteria in the CF Lung: Isolation Drives Diversity. Cell host & microbe, Vol. 18, H. 3. pp. 268-269.

Ozaki, Shogo and Schalch-Moser, Annina and Zumthor, Ludwig and Manfredi, Pablo and Ebbensgaard, Anna and Schirmer, Tilman and Jenal, Urs. (2014) Activation and polar sequestration of PopA, a c-di-GMP effector protein involved in Caulobacter crescentus cell cycle control. Molecular Microbiology, 94 (3). pp. 580-594.

Ittig, Simon and Lindner, Buko and Stenta, Marco and Manfredi, Pablo and Zdorovenko, Evelina and Knirel, Yuriy A. and Dal Peraro, Matteo and Cornelis, Guy R. and Zähringer, Ulrich. (2012) The Lipopolysaccharide from Capnocytophaga canimorsus Reveals an Unexpected Role of the Core-Oligosaccharide in MD-2 Binding. PLoS Pathogens, Vol. 8, H. 5 , e1002667.

Malone, J. G. and Jaeger, T. and Manfredi, P. and Dötsch, A. and Blanka, A. and Bos, R. and Cornelis, G. R. and Häussler, S. and Jenal, U.. (2012) The YfiBNR signal transduction mechanism reveals novel targets for the evolution of persistent pseudomonas aeruginosa in cystic fibrosis airways. PLoS Pathogens, Vol. 8, H. 6 , e1002760.

Manfredi, Pablo and Pagni, Marco and Cornelis, Guy R.. (2011) Complete genome sequence of the dog commensal and human pathogen Capnocytophaga canimorsus strain 5. Journal of bacteriology, Vol. 193, H. 19. pp. 5558-5559.

Renzi, Francesco and Manfredi, Pablo and Mally, Manuela and Moes, Suzanne and Jenö, Paul and Cornelis, Guy R.. (2011) The N-glycan Glycoprotein Deglycosylation Complex (Gpd) from Capnocytophaga canimorsus Deglycosylates Human IgG. PLoS Pathogens, Vol. 7, H. 6 , e1002118.

Book Section

Manfredi, Pablo and Santi, Isabella and Maffei, Enea and Lezan, Emmanuelle and Schmidt, Alexander and Jenal, Urs. (2021) Defining Proteomic Signatures to Predict Multidrug Persistence in Pseudomonas aeruginosa. In: Bacterial Persistence: Methods and Protocols. New York, NY, pp. 161-175.

Thesis

Manfredi, Pablo. Capnocytophaga canimorsus : genomic characterization of a specialised host-dependent lifestyle and implications in pathogenesis. 2012, Doctoral Thesis, University of Basel, Faculty of Science.

Working Paper

Santi, Isabella and Manfredi, Pablo and Maffei, Enea and Egli, Adrian and Jenal, Urs. (2020) Evolution of Antibiotic Tolerance Shapes Resistance Development in Chronic Pseudomonas aeruginosa Infections.

Other

Reinders, Alberto and Sellner, Benjamin and Fadel, Firas and van Berkum, Margo and Kaczmarczyk, Andreas and Ozaki, Shogo and Rueher, Johanna and Manfredi, Pablo and Sangermani, Matteo and Harms, Alexander and Perez, Camilo and Schirmer, Tilman and Jenal, Urs. (2021) Digital control of c-di-GMP in E. coli balances population-wide developmental transitions and phage sensitivity.