Items where contributor is "Fenner, Lukas"
2021Menardo, F. and Rutaihwa, L. K. and Zwyer, M. and Borrell, S. and Comas, I. and Conceicao, E. C. and Coscolla, M. and Cox, H. and Joloba, M. and Dou, H. Y. and Feldmann, J. and Fenner, L. and Fyfe, J. and Gao, Q. and Garcia de Viedma, D. and Garcia-Basteiro, A. L. and Gygli, S. M. and Hella, J. and Hiza, H. and Jugheli, L. and Kamwela, L. and Kato-Maeda, M. and Liu, Q. and Ley, S. D. and Loiseau, C. and Mahasirimongkol, S. and Malla, B. and Palittapongarnpim, P. and Rakotosamimanana, N. and Rasolofo, V. and Reinhard, M. and Reither, K. and Sasamalo, M. and Silva Duarte, R. and Sola, C. and Suffys, P. and Batista Lima, K. V. and Yeboah-Manu, D. and Beisel, C. and Brites, D. and Gagneux, S.. (2021) Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim. F1000Res, 10. p. 60. Ticlla, M. R. and Hella, J. and Hiza, H. and Sasamalo, M. and Mhimbira, F. and Rutaihwa, L. K. and Droz, S. and Schaller, S. and Reither, K. and Hilty, M. and Comas, I. and Beisel, C. and Schmid, C. D. and Fenner, L. and Gagneux, S.. (2021) The sputum microbiome in pulmonary tuberculosis and its association with disease manifestations: a cross-sectional study. Front Microbiol, 12. p. 633396. 2019Rutaihwa, Liliana K. and Sasamalo, Mohamed and Jaleco, Aladino and Hella, Jerry and Kingazi, Ally and Kamwela, Lujeko and Kingalu, Amri and Malewo, Bryceson and Shirima, Raymond and Doetsch, Anna and Feldmann, Julia and Reinhard, Miriam and Borrell, Sonia and Brites, Daniela and Reither, Klaus and Doulla, Basra and Fenner, Lukas and Gagneux, Sebastien. (2019) Insights into the genetic diversity of Mycobacterium tuberculosis in Tanzania. PLoS ONE, 14 (4). e0206334. Rutaihwa L, Menardo F. and Stucki D, Gygli S. M. and Ley SD, Malla B. and Feldmann J, Borrell S. and Beisel C, Middelkoop K. and Carter JE, Diero L. and Ballif M, Jugheli L. and Reither K, Fenner L. and Brites D, Gagneux S.. (2019) Multiple introductions of Mycobacterium tuberculosis lineage 2-Beijing into Africa over centuries. Frontiers in Ecology and Evolution, 7. p. 112. 2018Sikalengo, George and Hella, Jerry and Mhimbira, Francis and Rutaihwa, Liliana K. and Bani, Farida and Ndege, Robert and Sasamalo, Mohamed and Kamwela, Lujeko and Said, Khadija and Mhalu, Grace and Mlacha, Yeromin and Hatz, Christoph and Knopp, Stefanie and Gagneux, Sébastien and Reither, Klaus and Utzinger, Jürg and Tanner, Marcel and Letang, Emilio and Weisser, Maja and Fenner, Lukas. (2018) Distinct clinical characteristics and helminth co-infections in adult tuberculosis patients from urban compared to rural Tanzania. Infectious Diseases of Poverty, 7. p. 24. Hiza, Hellen and Fenner, Lukas and Hella, Jerry and Kuchaka, Davis and Sasamalo, Mohamed and Blauenfeldt, Thomas and Kibiki, Gibson and Kavishe, Reginald A. and Mhimbira, Francis and Ruhwald, Morten. (2018) Boosting effect of IL-7 in interferon gamma release assays to diagnose Mycobacterium tuberculosis infection. PLoS ONE, 13 (8). e0202525. Kühnert, Denise and Coscolla, Mireia and Brites, Daniela and Stucki, David and Metcalfe, John and Fenner, Lukas and Gagneux, Sebastien and Stadler, Tanja. (2018) Tuberculosis outbreak investigation using phylodynamic analysis. Epidemics, 25. pp. 47-53. 2017Mhimbira, Francis and Hella, Jerry and Said, Khadija and Kamwela, Lujeko and Sasamalo, Mohamed and Maroa, Thomas and Chiryamkubi, Magreth and Mhalu, Grace and Schindler, Christian and Reither, Klaus and Knopp, Stefanie and Utzinger, Jürg and Gagneux, Sébastien and Fenner, Lukas. (2017) Prevalence and clinical relevance of helminth co-infections among tuberculosis patients in urban Tanzania. PLoS Neglected Tropical Diseases, 11 (2). e0005342. Said, Khadija and Hella, Jerry and Mhalu, Grace and Chiryankubi, Mary and Masika, Edward and Maroa, Thomas and Mhimbira, Francis and Kapalata, Neema and Fenner, Lukas. (2017) Diagnostic delay and associated factors among patients with pulmonary tuberculosis in Dar es Salaam, Tanzania. Infectious Diseases of Poverty, 6. p. 64. Carlucci, James G. and Blevins Peratikos, Meridith and Kipp, Aaron M. and Lindegren, Mary L. and Du, Quy T. and Renner, Lorna and Reubenson, Gary and Ssali, John and Yotebieng, Marcel and Mandalakas, Anna M. and Davies, Mary-Ann and Ballif, Marie and Fenner, Lukas and Pettit, April C. and International Epidemiology Databases to Evaluate Aids Network, . (2017) Tuberculosis treatment outcomes among HIV/TB-coinfected children in the International Epidemiology Databases to Evaluate AIDS (IeDEA) network. Journal of Acquired Immune Deficiency Syndromes, 75 (2). pp. 156-163. Fenner, Lukas and Atkinson, Andrew and Boulle, Andrew and Fox, Matthew P. and Prozesky, Hans and Zürcher, Kathrin and Ballif, Marie and Furrer, Hansjakob and Zwahlen, Marcel and Davies, Mary-Ann and Egger, Matthias and International Epidemiology Database to Evaluate Aids in Southern, . (2017) HIV viral load as an independent risk factor for tuberculosis in South Africa: collaborative analysis of cohort studies. Journal of the International AIDS Society, 20. p. 21327. Kilcher, Gablu and Zwahlen, Marcel and Ritter, Christopher and Fenner, Lukas and Egger, Matthias. (2017) Medical use of cannabis in Switzerland: analysis of approved exceptional licences. Swiss medical weekly, 147. w14463. Hella, Jerry and Morrow, Carl and Mhimbira, Francis and Ginsberg, Samuel and Chitnis, Nakul and Gagneux, Sebastien and Mutayoba, Beatrice and Wood, Robin and Fenner, Lukas. (2017) Tuberculosis transmission in public locations in Tanzania: A novel approach to studying airborne disease transmission. Journal of Infection, 75 (3). pp. 191-197. 2016Zürcher, Kathrin and Ballif, Marie and Zwahlen, Marcel and Rieder, Hans L. and Egger, Matthias and Fenner, Lukas. (2016) Tuberculosis mortality and living conditions in Bern, Switzerland, 1856-1950. PLoS ONE, 11 (2). e0149195. Charles, M. Katherine and Lindegren, Mary Lou and Wester, C. William and Blevins, Meridith and Sterling, Timothy R. and Dung, Nguyen Thi and Dusingize, Jean Claude and Avit-Edi, Divine and Durier, Nicolas and Castelnuovo, Barbara and Nakigozi, Gertrude and Cortes, Claudia P. and Ballif, Marie and Fenner, Lukas. (2016) Implementation of tuberculosis intensive case finding, isoniazid preventive therapy, and infection control ("Three I's") and HIV-tuberculosis service integration in lower income countries. PLoS ONE, 11 (4). e0153243. Leuenberger, Andrea and Nassoro, Tatu and Said, Khadija and Fenner, Lukas and Sikalengo, George and Letang, Emilio and Montresor, Antonio and Zhou, Xiao-Nong and Steinmann, Peter and Marti, Hanspeter and Utzinger, Jürg and Knopp, Stefanie. (2016) Assessing stool quantities generated by three specific Kato-Katz thick smear templates employed in different settings. Infectious Diseases of Poverty, 5. p. 58. Stucki, David and Ballif, Marie and Egger, Matthias and Furrer, Hansjakob and Altpeter, Ekkehardt and Battegay, Manuel and Droz, Sara and Bruderer, Thomas and Coscolla, Mireia and Borrell, Sonia and Zürcher, Kathrin and Janssens, Jean-Paul and Calmy, Alexandra and Mazza Stalder, Jesica and Jaton, Katia and Rieder, Hans L. and Pfyffer, Gaby E. and Siegrist, Hans H. and Hoffmann, Matthias and Fehr, Jan and Dolina, Marisa and Frei, Reno and Schrenzel, Jacques and Böttger, Erik C. and Gagneux, Sebastien and Fenner, Lukas. (2016) Standard genotyping overestimates transmission of Mycobacterium tuberculosis among immigrants in a low-incidence country. Journal of clinical microbiology, 54 (7). pp. 1862-1870. Zürcher, Kathrin and Zwahlen, Marcel and Ballif, Marie and Rieder, Hans L. and Egger, Matthias and Fenner, Lukas. (2016) Influenza Pandemics and Tuberculosis Mortality in 1889 and 1918: Analysis of Historical Data from Switzerland. PLoS ONE, 11 (10). e0162575. Mhimbira, Francis and Hella, Jerry and Maroa, Thomas and Kisandu, Shadrack and Chiryamkubi, Magreth and Said, Khadija and Mhalu, Grace and Mkopi, Abdallah and Mutayoba, Beatrice and Reither, Klaus and Gagneux, Sébastien and Fenner, Lukas. (2016) Home-based and facility-based directly observed therapy of tuberculosis treatment under programmatic conditions in urban Tanzania. PLoS ONE, 11 (8). e0161171. Steiner, Andreas and Hella, Jerry and Grüninger, Servan and Mhalu, Grace and Mhimbira, Francis and Cercamondi, Colin I. and Doulla, Basra and Maire, Nicolas and Fenner, Lukas. (2016) Managing research and surveillance projects in real-time with a novel open-source eManagement tool designed for under-resourced countries. Journal of the American Medical Informatics Association, 23 (5). pp. 916-923. Stucki, David and Brites, Daniela and Jeljeli, Leïla and Coscolla, Mireia and Liu, Qingyun and Trauner, Andrej and Fenner, Lukas and Rutaihwa, Liliana and Borrell, Sonia and Luo, Tao and Gao, Qian and Kato-Maeda, Midori and Ballif, Marie and Egger, Matthias and Macedo, Rita and Mardassi, Helmi and Moreno, Milagros and Vilanova, Griselda Tudo and Fyfe, Janet and Globan, Maria and Thomas, Jackson and Jamieson, Frances and Guthrie, Jennifer L. and Asante-Poku, Adwoa and Yeboah-Manu, Dorothy and Wampande, Eddie and Ssengooba, Willy and Joloba, Moses and Boom, W. Henry and Basu, Indira and Bower, James and Saraiva, Margarida and Vasconcellos, Sidra E. G. and Suffys, Philip and Koch, Anastasia and Wilkinson, Robert and Gail-Bekker, Linda and Malla, Bijaya and Ley, Serej D. and Beck, Hans-Peter and de Jong, Bouke C. and Toit, Kadri and Sanchez-Padilla, Elisabeth and Bonnet, Maryline and Gil-Brusola, Ana and Frank, Matthias and Penlap Beng, Veronique N. and Eisenach, Kathleen and Alani, Issam and Ndung'u, Perpetual Wangui and Revathi, Gunturu and Gehre, Florian and Akter, Suriya and Ntoumi, Francine and Stewart-Isherwood, Lynsey and Ntinginya, Nyanda E. and Rachow, Andrea and Hoelscher, Michael and Cirillo, Daniela Maria and Skenders, Girts and Hoffner, Sven and Bakonyte, Daiva and Stakenas, Petras and Diel, Roland and Crudu, Valeriu and Moldovan, Olga and Al-Hajoj, Sahal and Otero, Larissa and Barletta, Francesca and Carter, E. Jane and Diero, Lameck and Supply, Philip and Comas, Iñaki and Niemann, Stefan and Gagneux, Sebastien. (2016) Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages. Nature genetics, 48 (12). pp. 1535-1543. 2015Stucki, David and Ballif, Marie and Bodmer, Thomas and Coscolla, Mireia and Maurer, Anne-Marie and Droz, Sara and Butz, Christa and Borrell, Sonia and Längle, Christel and Feldmann, Julia and Furrer, Hansjakob and Mordasini, Carlo and Helbling, Peter and Rieder, Hans L. and Egger, Matthias and Gagneux, Sébastien and Fenner, Lukas. (2015) Tracking a tuberculosis outbreak over 21 years : strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing. Journal of infectious diseases, Vol. 211, H. 8. pp. 1306-1316. Molefi, Mooketsi and Chofle, Awilly A. and Molloy, Síle F. and Kalluvya, Samuel and Changalucha, John M. and Cainelli, Francesca and Leeme, Tshepo and Lekwape, Nametso and Goldberg, Drew W. and Haverkamp, Miriam and Bisson, Gregory P. and Perfect, John R. and Letang, Emili and Fenner, Lukas and Meintjes, Graeme and Burton, Rosie and Makadzange, Tariro and Ndhlovu, Chiratidzo E. and Hope, William and Harrison, Thomas S. and Jarvis, Joseph N.. (2015) AMBITION-cm : intermittent high dose AmBisome on a high dose fluconazole backbone for cryptococcal meningitis induction therapy in sub-Saharan Africa : study protocol for a randomized controlled trial. Trials, Vol. 16. p. 276. Mhalu, Grace and Hella, Jerry and Doulla, Basra and Mhimbira, Francis and Mtutu, Hawa and Hiza, Helen and Sasamalo, Mohamed and Rutaihwa, Liliana and Rieder, Hans L. and Seimon, Tamsyn and Mutayoba, Beatrice and Weiss, Mitchell G. and Fenner, Lukas. (2015) Do instructional videos on sputum submission result in increased tuberculosis case detection? : a randomized controlled trial. PLoS ONE, Vol. 10, H. 9 , e0138413. Ballif, Marie and Renner, Lorna and Claude Dusingize, Jean and Leroy, Valeriane and Ayaya, Samuel and Wools-Kaloustian, Kara and Cortes, Claudia P. and McGowan, Catherine C. and Graber, Claire and Mandalakas, Anna M. and Mofenson, Lynne M. and Egger, Matthias and Kumara Wati, Ketut Dewi and Nallusamy, Revathy and Reubenson, Gary and Davies, Mary-Ann and Fenner, Lukas and International Epidemiologic Databases to Evaluate Aids, and International Epidemiologic Databases to Evaluate Aids IeDEA, . (2015) Tuberculosis in pediatric antiretroviral therapy programs in low- and middle-income countries : diagnosis and screening practices. Journal of the Pediatric Infectious Diseases Society, Vol. 4, H. 1. pp. 30-38. 2014Ballif, M. and Nhandu, V. and Wood, R. and Dusingize, J. C. and Carter, E. J. and Cortes, C. P. and McGowan, C. C. and Diero, L. and Graber, C. and Renner, L. and Hawerlander, D. and Kiertiburanakul, S. and Du, Q. T. and Sterling, T. R. and Egger, M. and Fenner, L. and International epidemiological Databases to Evaluate Aids, . (2014) Detection and management of drug-resistant tuberculosis in HIV-infected patients in lower-income countries. The international journal of tuberculosis and lung disease, Vol. 18, H. 11. pp. 1327-1336. Cornell, Morna and Lessells, Richard and Fox, Matthew P. and Garone, Daniela B. and Giddy, Janet and Fenner, Lukas and Myer, Landon and Boulle, Andrew. (2014) Mortality among adults transferred and lost to follow-up from antiretroviral therapy programmes in South Africa : a multicenter cohort study. Journal of acquired immune deficiency syndromes, Vol. 67, H. 2 , e67-e75. 2013Schomaker, Michael and Egger, Matthias and Maskew, Mhairi and Garone, Daniela and Prozesky, Hans and Hoffmann, Christopher J. and Boulle, Andrew and Fenner, Lukas. (2013) Immune recovery after starting ART in HIV-infected patients presenting and not presenting with Tuberculosis in south Africa. JAIDS : journal of acquired immune deficiency syndromes : official publication of the International Retrovirology Association, Vol. 63, H. 1. pp. 142-145. Fenner, Lukas and Ballif, Marie and Graber, Claire and Nhandu, Venerandah and Dusingize, Jean Claude and Cortes, Claudia P. and Carriquiry, Gabriela and Anastos, Kathryn and Garone, Daniela and Jong, Eefje and Gnokoro, Joachim Charles and Sued, Omar and Ajayi, Samuel and Diero, Lameck and Wools-Kaloustian, Kara and Kiertiburanakul, Sasisopin and Castelnuovo, Barbara and Lewden, Charlotte and Durier, Nicolas and Sterling, Timothy R. and Egger, Matthias and International epidemiological Databases to Evaluate Aids, . (2013) Tuberculosis in antiretroviral treatment programs in lower income countries: availability and use of diagnostics and screening. PLoS ONE, Vol. 8, H. 10 , e77697. |
