Items where Author is "Stadler, Tanja"

2022

Huisman, Jana S. and Scire, Jérémie and Angst, Daniel C. and Li, Jinzhou and Neher, Richard A. and Maathuis, Marloes H. and Bonhoeffer, Sebastian and Stadler, Tanja. (2022) Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2. eLife, 11. p. 50.

Nadeau, Sarah A. and Vaughan, Timothy G. and Beckmann, Christiane and Topolsky, Ivan and Chen, Chaoran and Hodcroft, Emma and Schär, Tobias and Nissen, Ina and Santacroce, Natascha and Burcklen, Elodie and Ferreira, Pedro and Jablonski, Kim Philipp and Posada-Céspedes, Susana and Capece, Vincenzo and Seidel, Sophie and Santamaria de Souza, Noemi and Martinez-Gomez, Julia M. and Cheng, Phil and Bosshard, Philipp P. and Levesque, Mitchell P. and Kufner, Verena and Schmutz, Stefan and Zaheri, Maryam and Huber, Michael and Trkola, Alexandra and Cordey, Samuel and Laubscher, Florian and Gonçalves, Ana Rita and Aeby, Sébastien and Pillonel, Trestan and Jacot, Damien and Bertelli, Claire and Greub, Gilbert and Leuzinger, Karoline and Stange, Madlen and Mari, Alfredo and Roloff, Tim and Seth-Smith, Helena and Hirsch, Hans H. and Egli, Adrian and Redondo, Maurice and Kobel, Olivier and Noppen, Christoph and du Plessis, Louis and Beerenwinkel, Niko and Neher, Richard A. and Beisel, Christian and Stadler, Tanja. (2022) Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data. Science Translational Medicine, 15 (680). eabn7979.

Banholzer, Nicolas and Lison, Adrian and Ozcelik, Dennis and Stadler, Tanja and Feuerriegel, Stefan and Vach, Werner. (2022) The methodologies to assess the effectiveness of non-pharmaceutical interventions during COVID-19: a systematic review. European Journal of Epidemiology, 37 (10). pp. 1003-1024.

2021

Benz, Fabienne and Huisman, Jana S. and Bakkeren, Erik and Herter, Joana A. and Stadler, Tanja and Ackermann, Martin and Diard, Médéric and Egli, Adrian and Hall, Alex R. and Hardt, Wolf-Dietrich and Bonhoeffer, Sebastian. (2021) Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo. The ISME journal, 15 (3). pp. 862-878.

Goncalves Cabecinhas, Ana Rita and Roloff, Tim and Stange, Madlen and Bertelli, Claire and Huber, Michael and Ramette, Alban and Chen, Chaoran and Nadeau, Sarah and Gerth, Yannick and Yerly, Sabine and Opota, Onya and Pillonel, Trestan and Schuster, Tobias and Metzger, Cesar M. J. A. and Sieber, Jonas and Bel, Michael and Wohlwend, Nadia and Baumann, Christian and Koch, Michel C. and Bittel, Pascal and Leuzinger, Karoline and Brunner, Myrta and Suter-Riniker, Franziska and Berlinger, Livia and Søgaard, Kirstine K. and Beckmann, Christiane and Noppen, Christoph and Redondo, Maurice and Steffen, Ingrid and Seth-Smith, Helena M. B. and Mari, Alfredo and Lienhard, Reto and Risch, Martin and Nolte, Oliver and Eckerle, Isabella and Martinetti Lucchini, Gladys and Hodcroft, Emma B. and Neher, Richard A. and Stadler, Tanja and Hirsch, Hans H. and Leib, Stephen L. and Risch, Lorenz and Kaiser, Laurent and Trkola, Alexandra and Greub, Gilbert and Egli, Adrian. (2021) SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021-Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing. Microorganisms, 9 (4). p. 9040677.

Hodcroft, Emma B. and Zuber, Moira and Nadeau, Sarah and Vaughan, Timothy G. and Crawford, Katharine H. D. and Althaus, Christian L. and Reichmuth, Martina L. and Bowen, John E. and Walls, Alexandra C. and Corti, Davide and Bloom, Jesse D. and Veesler, David and Mateo, David and Hernando, Alberto and Comas, Iñaki and González-Candelas, Fernando and SeqCovid-Spain consortium, and Stadler, Tanja and Neher, Richard A.. (2021) Spread of a SARS-CoV-2 variant through Europe in the summer of 2020. Nature, 595 (7869). pp. 707-712.

2020

Müller, Nicola F. and Wüthrich, Daniel and Goldman, Nina and Sailer, Nadine and Saalfrank, Claudia and Brunner, Myrta and Augustin, Noémi and Seth-Smith, Helena Mb and Hollenstein, Yvonne and Syedbasha, Mohammedyaseen and Lang, Daniela and Neher, Richard A. and Dubuis, Olivier and Naegele, Michael and Buser, Andreas and Nickel, Christian H. and Ritz, Nicole and Zeller, Andreas and Lang, Brian M. and Hadfield, James and Bedford, Trevor and Battegay, Manuel and Schneider-Sliwa, Rita and Egli, Adrian and Stadler, Tanja. (2020) Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics. PLoS Pathogens, 16 (11). e1008984.

Mavian, Carla and Pond, Sergei Kosakovsky and Marini, Simone and Magalis, Brittany Rife and Vandamme, Anne-Mieke and Dellicour, Simon and Scarpino, Samuel V. and Houldcroft, Charlotte and Villabona-Arenas, Julian and Paisie, Taylor K. and Trovão, Nídia S. and Boucher, Christina and Zhang, Yun and Scheuermann, Richard H. and Gascuel, Olivier and Lam, Tommy Tsan-Yuk and Suchard, Marc A. and Abecasis, Ana and Wilkinson, Eduan and de Oliveira, Tulio and Bento, Ana I. and Schmidt, Heiko A. and Martin, Darren and Hadfield, James and Faria, Nuno and Grubaugh, Nathan D. and Neher, Richard A. and Baele, Guy and Lemey, Philippe and Stadler, Tanja and Albert, Jan and Crandall, Keith A. and Leitner, Thomas and Stamatakis, Alexandros and Prosperi, Mattia and Salemi, Marco. (2020) Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable. Proceedings of the National Academy of Sciences of the United States of America, 117 (23). pp. 12522-12523.

2019

Wüthrich, Daniel and Lang, Daniela and Müller, Nicola F. and Neher, Richard A. and Stadler, Tanja and Egli, Adrian. (2019) Evaluation of two workflows for whole genome sequencing-based typing of influenza A viruses. Journal of Virological Methods, 266. pp. 30-33.

Egli, Adrian and Saalfrank, Claudia and Goldman, Nina and Brunner, Myrta and Hollenstein, Yvonne and Vogel, Thomas and Augustin, Noémie and Wüthrich, Daniel and Seth-Smith, Helena M. B. and Roth, Elisa and Syedbasha, Mohammedyaseen and Mueller, Nicola F. and Vogt, Dominik and Bauer, Jan and Amar-Sliwa, Nadezhda and Meinel, Dominik M. and Dubuis, Olivier and Naegele, Michael and Tschudin-Sutter, Sarah and Buser, Andreas and Nickel, Christian H. and Zeller, Andreas and Ritz, Nicole and Battegay, Manuel and Stadler, Tanja and Schneider-Sliwa, Rita. (2019) Identification of influenza urban transmission patterns by geographical, epidemiological and whole genome sequencing data: protocol for an observational study. BMJ Open, 9 (8). e030913.

2018

Kühnert, Denise and Coscolla, Mireia and Brites, Daniela and Stucki, David and Metcalfe, John and Fenner, Lukas and Gagneux, Sebastien and Stadler, Tanja. (2018) Tuberculosis outbreak investigation using phylodynamic analysis. Epidemics, 25. pp. 47-53.

2017

Zinsstag, Jakob and Lechenne, Monique and Laager, Mirjam and Mindekem, Rolande and Naïssengar, Service and Oussiguéré, Assandi and Bidjeh, Kebkiba and Rives, Germain and Tessier, Julie and Madjaninan, Seraphin and Ouagal, Mahamat and Moto, Daugla D. and Alfaroukh, Idriss O. and Muthiani, Yvonne and Traoré, Abdallah and Hattendorf, Jan and Lepelletier, Anthony and Kergoat, Lauriane and Bourhy, Hervé and Dacheux, Laurent and Stadler, Tanja and Chitnis, Nakul. (2017) Vaccination of dogs in an African city interrupts rabies transmission and reduces human exposure. Science Translational Medicine, 9 (421). eaaf6984.

2016

Meinel, Dominique M. and Kuehl, Richard and Zbinden, Reinhard and Boskova, Veronika and Garzoni, Christian and Fadini, Davide and Dolina, Marisa and Blumel, Benjamin and Weibel, Thomas and Tschudin-Sutter, Sarah and Widmer, Andreas F. and Bielicki, Julia A. and Dierig, Alexa and Heininger, Ulrich and Konrad, Regina and Berger, Anja and Hinic, Vladimir and Goldenberger, Daniel and Blaich, Annette and Stadler, Tanja and Battegay, Manuel and Sing, Andreas and Egli, Adrian. (2016) Outbreak investigation for toxigenic Corynebacterium diphtheriae wound infections in refugees from Northeast Africa and Syria in Switzerland and Germany by whole genome sequencing. Clinical Microbiology and Infection, 22 (12). 1003e1-1003e8.

2014

Avila, Dorita and Keiser, Olivia and Egger, Matthias and Kouyos, Roger D. and Böni, Jürg and Yerly, Sabine and Klimkait, Thomas and Vernazza, Pietro L. and Aubert, Vincent and Rauch, Andri and Bonhoeffer, Sebastian and Günthard, Huldrych F. and Stadler, Tanja and Spycher, Ben D. and Swiss HIV Cohort Study, . (2014) Social meets molecular: Combining phylogenetic and latent class analyses to understand HIV-1 transmission in Switzerland. American Journal of Epidemiology, 179 (12). pp. 1514-1525.

2012

Stadler, Tanja and Kouyos, Roger and von Wyl, Viktor and Yerly, Sabine and Böni, Jürg and Bürgisser, Philippe and Klimkait, Thomas and Joos, Beda and Rieder, Philip and Xie, Dong and Günthard, Huldrych F. and Drummond, Alexei J. and Bonhoeffer, Sebastian and Swiss HIV Cohort Study, . (2012) Estimating the basic reproductive number from viral sequence data. Molecular biology and evolution, 29 (1). pp. 347-357.