Browse by Basel Contributors ID

2023

Spreafico, A. and Heirali, A. A. and Araujo, D. V. and Tan, T. J. and Oliva, M. and Schneeberger, P. H. H. and Chen, B. and Wong, M. K. and Stayner, L. A. and Hansen, A. R. and Saibil, S. D. and Wang, B. X. and Cochrane, K. and Sherriff, K. and Allen-Vercoe, E. and Xu, W. and Siu, L. L. and Coburn, B.. (2023) First-in-class Microbial Ecosystem Therapeutic 4 (MET4) in combination with immune checkpoint inhibitors in patients with advanced solid tumors (MET4-IO Trial). Ann Oncol, 34 (6). pp. 520-530.

2022

Rooney, A. M. and Raphenya, A. R. and Melano, R. G. and Seah, C. and Yee, N. R. and MacFadden, D. R. and McArthur, A. G. and Schneeberger, P. H. H. and Coburn, B.. (2022) Performance characteristics of next-generation sequencing for the detection of antimicrobial resistance determinants in Escherichia coli genomes and metagenomes. mSystems, 7 (3). e0002222.

Schneeberger, P. H. H. and Gueuning, M. and Welsche, S. and Hürlimann, E. and Dommann, J. and Haberli, C. and Frey, J. E. and Sayasone, S. and Keiser, J.. (2022) Different gut microbial communities correlate with efficacy of albendazole-ivermectin against soil-transmitted helminthiases. Nat Commun, 13. p. 1063.

Schneeberger, P. H. H. and Zhang, C. Y. K. and Santilli, J. and Chen, B. and Xu, W. and Lee, Y. and Wijesinha, Z. and Reguera-Nuñez, E. and Yee, N. and Ahmed, M. and Boonstra, K. and Ramendra, R. and Frankel, C. W. and Palmer, S. M. and Todd, J. L. and Martinu, T. and Coburn, B.. (2022) Lung allograft microbiome association with gastroesophageal reflux, inflammation, and allograft dysfunction. Am J Respir Crit Care Med. in press.

2021

Cho, M. Y. and Oliva, M. and Spreafico, A. and Chen, B. and Wei, X. and Choi, Y. and Kaul, R. and Siu, L. L. and Coburn, B. and Schneeberger, P. H. H.. (2021) Two-target quantitative PCR to predict library composition for shallow shotgun sequencing. mSystems, 6 (4). e00552-21.

Buchter, V. and Schneeberger, P. H. H. and Keiser, J.. (2021) Validation of a human-serum-based in vitro growth method for drug screening on juvenile development stages of Schistosoma mansoni. PLoS Negl Trop Dis, 15 (3). e0009313.

2019

Massart, Sebastien and Chiumenti, Michela and De Jonghe, Kris and Glover, Rachel and Haegeman, Annelies and Koloniuk, Igor and Komínek, Petr and Kreuze, Jan and Kutnjak, Denis and Lotos, Leonidas and Maclot, François and Maliogka, Varvara and Maree, Hans J. and Olivier, Thibaut and Olmos, Antonio and Pooggin, Mikhail M. and Reynard, Jean-Sébastien and Ruiz-García, Ana B. and Safarova, Dana and Schneeberger, Pierre H. H. and Sela, Noa and Turco, Silvia and Vainio, Eeva J. and Varallyay, Eva and Verdin, Eric and Westenberg, Marcel and Brostaux, Yves and Candresse, Thierry. (2019) Virus detection by high-throughput sequencing of small RNAs: large scale performance testing of sequence analysis strategies. Phytopathology, 109 (3). pp. 488-497.

Schneeberger, Pierre H. H. and Fuhrimann, Samuel and Becker, Sören L. and Pothier, Joël F. and Duffy, Brion and Beuret, Christian and Frey, Jürg E. and Utzinger, Jürg. (2019) Qualitative microbiome profiling along a wastewater system in Kampala, Uganda. Scientific Reports, 9. p. 17334.

2018

Schneeberger, Pierre H. H. and Coulibaly, Jean T. and Panic, Gordana and Daubenberger, Claudia and Gueuning, Morgan and Frey, Jürg E. and Keiser, Jennifer. (2018) Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome. Parasites and Vectors, 11. p. 168.

Schneeberger, Pierre H. H. and Coulibaly, Jean T. and Gueuning, Morgan and Moser, Wendelin and Coburn, Bryan and Frey, Jürg E. and Keiser, Jennifer. (2018) Off-target effects of tribendimidine, tribendimidine plus ivermectin, tribendimidine plus oxantel-pamoate, and albendazole plus oxantel-pamoate on the human gut microbiota. International journal for parasitology. Drugs and drug resistance, 8 (3). pp. 372-378.

2017

Schneeberger, Pierre H. H. and Pothier, Joël F. and Bühlmann, Andreas and Duffy, Brion and Beuret, Christian and Utzinger, Jürg and Frey, Jürg E.. (2017) Development and evaluation of a bioinformatics approach for designing molecular assays for viral detection. PLoS ONE, 12 (5). e0178195.

Gétaz, M. and Bühlmann, A. and Schneeberger, P. H. H. and Van Malderghem, C. and Duffy, B. and Maes, M. and Pothier, J. F. and Cottyn, B.. (2017) A diagnostic tool for improved detection of Xanthomonas fragariae using a rapid and highly specific LAMP assay designed with comparative genomics. Plant Pathology, 66 (7). pp. 1094-1102.

2016

Schneeberger, Pierre H. H. and Becker, Sören L. and Pothier, Joël F. and Duffy, Brion and N'Goran, Eliézer K. and Beuret, Christian and Frey, Jürg E. and Utzinger, Jürg. (2016) Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d'Ivoire : a proof-of-concept study. Infection, genetics and evolution, 40. pp. 389-397.

Becker, Sören L. and Yap, Peiling and Horié, Ninon S. and Alirol, Emilie and Barbé, Barbara and Bhatta, Nisha K. and Bhattarai, Narayan R. and Bottieau, Emmanuel and Chatigre, Justin K. and Coulibaly, Jean T. and Fofana, Hassan K. M. and Jacobs, Jan and Karki, Prahlad and Khanal, Basudha and Knopp, Stefanie and Koirala, Kanika and Mahendradhata, Yodi and Mertens, Pascal and Meyanti, Fransiska and Murhandarwati, Elsa H. and N'Goran, Eliézer K. and Peeling, Rosanna W. and Pradhan, Bickram and Ravinetto, Raffaella and Rijal, Suman and Sacko, Moussa and Saye, Rénion and Schneeberger, Pierre H. H. and Schurmans, Céline and Silué, Kigbafori D. and Steinmann, Peter and van Loen, Harry and Verdonck, Kristien and van Lieshout, Lisette and von Müller, Lutz and Yao, Joel A. and Boelaert, Marleen and Chappuis, François and Polman, Katja and Utzinger, Jürg. (2016) Experiences and lessons from a multicountry NIDIAG study on persistent digestive disorders in the tropics. PLoS Neglected Tropical Diseases, 10 (11). e0004818.

Boelaert, Marleen and Nidiag Consortium, . (2016) Clinical research on neglected tropical diseases : challenges and solutions. PLoS Neglected Tropical Diseases, 10 (11). e0004853.

2015

Reynard, Jean-Sébastien and Schneeberger, Pierre H. H. and Frey, Jürg Ernst and Schaerer, Santiago. (2015) Biological, serological, and molecular characterization of a hghly divergent strain of grapevine leafroll-associated virus 4 causing grapevine leafroll disease. Phytopathology, 105 (9). pp. 1262-1269.