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Karousis, Evangelos D. and Gypas, Foivos and Zavolan, Mihaela and Mühlemann, Oliver. (2021) Nanopore sequencing reveals endogenous NMD-targeted isoforms in human cells. Genome Biology, 22 (1). p. 223.

Jutzi, Daniel and Campagne, Sébastien and Schmidt, Ralf and Reber, Stefan and Mechtersheimer, Jonas and Gypas, Foivos and Schweingruber, Christoph and Colombo, Martino and von Schroetter, Christine and Loughlin, Fionna E. and Devoy, Anny and Hedlund, Eva and Zavolan, Mihaela and Allain, Frédéric H.-T. and Ruepp, Marc-David. (2020) Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced amyotrophic lateral sclerosis. Nature Communications, 11 (1). p. 6341.

Ho-Xuan, Hung and Lehmann, Gerhard and Glazar, Petar and Gypas, Foivos and Eichner, Norbert and Heizler, Kevin and Schlitt, Hans Jürgen and Zavolan, Mihaela and Rajewsky, Nikolaus and Meister, Gunter and Hackl, Christina. (2020) Gene Expression Signatures of a Preclinical Mouse Model during Colorectal Cancer Progression under Low-Dose Metronomic Chemotherapy. Cancers, 13 (1). p. 49.

Gruber, Andreas J. and Gypas, Foivos and Riba, Andrea and Schmidt, Ralf and Zavolan, Mihaela. (2018) Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms. Nature methods, 15 (10). pp. 832-836.

Gumienny, Rafal and Jedlinski, Dominik J. and Schmidt, Alexander and Gypas, Foivos and Martin, Georges and Vina-Vilaseca, Arnau and Zavolan, Mihaela. (2017) High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq. Nucleic Acids Research, 45 (5). pp. 2341-2353.

Kanitz, Alexander and Gypas, Foivos and Gruber, Andreas J. and Gruber, Andreas R. and Martin, Georges and Zavolan, Mihaela. (2015) Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data. Genome biology, Vol. 16. p. 150.