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Galeone, Antonio and Adams, Joshua M. and Matsuda, Shinya and Presa, Maximiliano F. and Pandey, Ashutosh and Han, Seung Yeop and Tachida, Yuriko and Hirayama, Hiroto and Vaccari, Thomas and Suzuki, Tadashi and Lutz, Cathleen M. and Affolter, Markus and Zuberi, Aamir and Jafar-Nejad, Hamed. (2020) Regulation of BMP4/Dpp retrotranslocation and signaling by deglycosylation. eLife, 9. e55596.

Matsuda, Shinya and Schaefer, Jonas V. and Mii, Yusuke and Hori, Yutaro and Bieli, Dimitri and Taira, Masanori and Plückthun, Andreas and Affolter, Markus. (2020) Asymmetric requirement of Dpp/BMP morphogen dispersal in the Drosophila wing disc. bioRxiv, November. pp. 1-31.

Aguilar, Gustavo and Vigano, M. Alessandra and Affolter, Markus and Matsuda, Shinya. (2019) Reflections on the use of protein binders to study protein function in developmental biology. WIREs Developmental Biology, 8 (6). e356.

Vigano, M. Alessandra and Bieli, Dimitri and Schaefer, Jonas V. and Jakob, Roman P. and Matsuda, Shinya and Maier, Timm and Plückthun, Andreas and Affolter, Markus. (2018) Correction:DARPins recognizing mTFP1 as novel reagents for in vitro; and in vivo protein manipulations. Biology open, 7 (12). bio036749.

Vigano, M. Alessandra and Bieli, Dimitri and Schaefer, Jonas V. and Jakob, Roman Peter and Matsuda, Shinya and Maier, Timm and Plückthun, Andreas and Affolter, Markus. (2018) DARPins recognizing mTFP1 as novel reagents for in vitro and in vivo protein manipulations. Biology open, 7 (11). bio036749.

Matsuda, Shinya and Harmansa, Stefan and Affolter, Markus. (2016) BMP morphogen gradients in flies. Cytokine & Growth Factor Reviews, 27. pp. 119-127.

Bieli, D. and Alborelli, I. and Harmansa, S. and Matsuda, S. and Caussinus, E. and Affolter, Markus. (2016) Development and Application of Functionalized Protein Binders in Multicellular Organisms. International Review of Cell and Molecular Biology, 325. pp. 181-213.

Shimmi, Osamu and Matsuda, Shinya and Hatakeyama, Masatsugu. (2014) Insights into the molecular mechanisms underlying diversified wing venation among insects. Proceedings of the Royal Society. Series B, Biological Sciences, 281 (1789). p. 20140264.

Matsuda, Shinya and Blanco, Jorge and Shimmi, Osamu. (2013) A feed-forward loop coupling extracellular BMP transport and morphogenesis in Drosophila wing. PLoS Genetics, 9 (3). e1003403.

Matsuda, Shinya and Yoshiyama, Naotoshi and Künnapuu-Vulli, Jaana and Hatakeyama, Masatsugu and Shimmi, Osamu. (2013) Dpp/BMP transport mechanism is required for wing venation in the sawfly Athalia rosae. Insect biochemistry and molecular biology, 43 (5). pp. 466-473.

Matsuda, Shinya and Shimmi, Osamu. (2012) Directional transport and active retention of Dpp/BMP create wing vein patterns in Drosophila. Developmental Biology, 366 (2). pp. 153-162.