Items where Author is "Niemann, S."

2023

Zwyer, M. and Rutaihwa, L. K. and Windels, E. and Hella, J. and Menardo, F. and Sasamalo, M. and Sommer, G. and Schmülling, L. and Borrell, S. and Reinhard, M. and Dötsch, A. and Hiza, H. and Stritt, C. and Sikalengo, G. and Fenner, L. and De Jong, B. C. and Kato-Maeda, M. and Jugheli, L. and Ernst, J. D. and Niemann, S. and Jeljeli, L. and Ballif, M. and Egger, M. and Rakotosamimanana, N. and Yeboah-Manu, D. and Asare, P. and Malla, B. and Dou, H. Y. and Zetola, N. and Wilkinson, R. J. and Cox, H. and Carter, E. J. and Gnokoro, J. and Yotebieng, M. and Gotuzzo, E. and Abimiku, A. and Avihingsanon, A. and Xu, Z. M. and Fellay, J. and Portevin, D. and Reither, K. and Stadler, T. and Gagneux, S. and Brites, D.. (2023) Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania. PLoS Pathog, 19 (4). e1010893.

Domínguez, J. and Boeree, M. J. and Cambau, E. and Chesov, D. and Conradie, F. and Cox, V. and Dheda, K. and Dudnyk, A. and Farhat, M. R. and Gagneux, S. and Grobusch, M. P. and Gröschel, M. I. and Guglielmetti, L. and Kontsevaya, I. and Lange, B. and van Leth, F. and Lienhardt, C. and Mandalakas, A. M. and Maurer, F. P. and Merker, M. and Miotto, P. and Molina-Moya, B. and Morel, F. and Niemann, S. and Veziris, N. and Whitelaw, A. and Horsburgh, C. R. and Jr., and Lange, C. and TBnet, and Resist-TB networks, . (2023) Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis: a 2023 TBnet/RESIST-TB consensus statement. The Lancet infectious diseases, 23 (4). e122-e137.

2022

Van Rie, A. and Walker, T. and de Jong, B. and Rupasinghe, P. and Riviere, E. and Dartois, V. and Sonnenkalb, L. and Machado, D. and Gagneux, S. and Supply, P. and Dreyer, V. and Niemann, S. and Goig, G. and Meehan, C. and Tagliani, E. and Cirillo, D. M.. (2022) Balancing access to BPaLM regimens and risk of resistance. The Lancet infectious diseases, S1473-3099 (22). 00543-00546.

Merker, M. and Rasigade, J. P. and Barbier, M. and Cox, H. and Feuerriegel, S. and Kohl, T. A. and Shitikov, E. and Klaos, K. and Gaudin, C. and Antoine, R. and Diel, R. and Borrell, S. and Gagneux, S. and Nikolayevskyy, V. and Andres, S. and Crudu, V. and Supply, P. and Niemann, S. and Wirth, T.. (2022) Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis. Nat Commun, 13. p. 5105.

2021

Alagna, R. and Cabibbe, A. M. and Miotto, P. and Saluzzo, F. and Köser, C. U. and Niemann, S. and Gagneux, S. and Rodrigues, C. and Rancoita, P. V. M. and Cirillo, D. M.. (2021) Is the new WHO definition of extensively drug-resistant tuberculosis easy to apply in practice? The European respiratory journal, 58. p. 2100959.

Sanoussi, C. N. and Coscolla, M. and Ofori-Anyinam, B. and Otchere, I. D. and Antonio, M. and Niemann, S. and Parkhill, J. and Harris, S. and Yeboah-Manu, D. and Gagneux, S. and Rigouts, L. and Affolabi, D. and de Jong, B. C. and Meehan, C. J.. (2021) Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv. Microb Genom, 7 (7). 000437.

Coscolla, M. and Gagneux, S. and Menardo, F. and Loiseau, C. and Ruiz-Rodriguez, P. and Borrell, S. and Otchere, I. D. and Asante-Poku, A. and Asare, P. and Sanchez-Buso, L. and Gehre, F. and Sanoussi, C. N. and Antonio, M. and Affolabi, D. and Fyfe, J. and Beckert, P. and Niemann, S. and Alabi, A. S. and Grobusch, M. P. and Kobbe, R. and Parkhill, J. and Beisel, C. and Fenner, L. and Bottger, E. C. and Meehan, C. J. and Harris, S. R. and de Jong, B. C. and Yeboah-Manu, D. and Brites, D.. (2021) Phylogenomics of; Mycobacterium africanum; reveals a new lineage and a complex evolutionary history. Microb Genom, 7 (2). 000477.

2020

Ezewudo, M. and Borens, A. and Chiner-Oms, A. and Miotto, P. and Chindelevitch, L. and Starks, A. M. and Hanna, D. and Liwski, R. and Zignol, M. and Gilpin, C. and Niemann, S. and Kohl, T. A. and Warren, R. M. and Crook, D. and Gagneux, S. and Hoffner, S. and Rodrigues, C. and Comas, I. and Engelthaler, D. M. and Alland, D. and Rigouts, L. and Lange, C. and Dheda, K. and Hasan, R. and McNerney, R. and Cirillo, D. M. and Schito, M. and Rodwell, T. C. and Posey, J.. (2020) Author correction: Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase. Scientific Reports, 10 (1). p. 3531.

2017

Andre, E. and Goeminne, L. and Cabibbe, A. and Beckert, P. and Kabamba Mukadi, B. and Mathys, V. and Gagneux, S. and Niemann, S. and Van Ingen, J. and Cambau, E.. (2017) Consensus numbering system for the rifampicin resistance-associated rpoB gene mutations in pathogenic mycobacteria. Clinical microbiology and infection, 23 (3). pp. 167-172.

2016

Domínguez, J. and Boettger, E. C. and Cirillo, D. and Cobelens, F. and Eisenach, K. D. and Gagneux, S. and Hillemann, D. and Horsburgh, R. and Molina-Moya, B. and Niemann, S. and Tortoli, E. and Whitelaw, A. and Lange, C. and Tbnet, and Resist-TB networks, . (2016) Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis : a TBNET/RESIST-TB consensus statement. The international journal of tuberculosis and lung disease, 20 (1). pp. 24-42.

2015

Olaru, I. D. and Rachow, A. and Lange, C. and Ntinginya, N. E. and Reither, K. and Hoelscher, M. and Vollrath, O. and Niemann, S.. (2015) Ascertaining in vivo virulence of Mycobacterium tuberculosis lineages in patients in Mbeya, Tanzania. The international journal of tuberculosis and lung disease, Vol. 19, H. 1. pp. 70-73.

2014

Köser, C. U. and Bryant, J. M. and Comas, I. and Feuerriegel, S. and Niemann, S. and Gagneux, S. and Parkhill, J. and Peacock, S. J.. (2014) Comment on: Characterization of the embB gene in Mycobacterium tuberculosis isolates from Barcelona and rapid detection of main mutations related to ethambutol resistance using a low-density DNA array. The journal of antimicrobial chemotherapy, Vol. 69, H. 8. pp. 2298-2299.

Köser, C. U. and Bryant, J. M. and Comas, I. and Feuerriegel, S. and Niemann, S. and Gagneux, S. and Parkhill, J. and Peacock, S. J.. (2014) Genetic diversity within Mycobacterium tuberculosis complex impacts on the accuracy of genotypic pyrazinamide drug-susceptibility assay. Tuberculosis, Vol. 94. pp. 451-453.

Bos, K. I. and Harkins, K. M. and Herbig, A. and Coscolla, M. and Weber, N. and Comas, I. and Forrest, S. A. and Bryant, J. M. and Harris, S. R. and Schuenemann, V. J. and Campbell, T. J. and Majander, K. and Wilbur, A. K. and Guichon, R. A. and Wolfe Steadman, D. L. and Cook, D. C. and Niemann, S. and Behr, M. A. and Zumarraga, M. and Bastida, R. and Huson, D. and Nieselt, K. and Young, D. and Parkhill, J. and Buikstra, J. E. and Gagneux, S. and Stone, A. C. and Krause, J.. (2014) Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis. Nature, Vol. 514, H. 7523. pp. 494-497.

2012

Ballif, M. and Harino, P. and Ley, S. and Coscolla, M. and Niemann, S. and Carter, R. and Coulter, C. and Borrell, S. and Siba, P. and Phuanukoonnon, S. and Gagneux, S. and Beck, H. P.. (2012) Drug resistance-conferring mutations in Mycobacterium tuberculosis from Madang, Papua New Guinea. BMC microbiology, Vol. 12 , 191.

Ballif, M. and Harino, P. and Ley, S. and Carter, R. and Coulter, C. and Niemann, S. and Borrell, S. and Fenner, L. and Siba, P. and Phuanukoonnon, S. and Gagneux, S. and Beck, H. P.. (2012) Genetic diversity of Mycobacterium tuberculosis in Madang, Papua New Guinea. The international journal of tuberculosis and lung disease, Vol. 16, H. 8. pp. 1100-1107.

2011

Smith, N. H. and Berg, S. and Dale, J. and Allen, A. and Rodriguez, S. and Romero, B. and Matos, F. and Ghebremichael, S. and Karoui, C. and Donati, C. and Machado, A. D. and Mucavele, C. and Kazwala, R. R. and Hilty, M. and Cadmus, S. and Ngandolo, B. N. and Habtamu, M. and Oloya, J. and Muller, A. and Milian-Suazo F., and Andrievskaia, O. and Projahn, M. and Barandiaran, S. and Macias, A. and Muller, B. and Zanini, M. S. and Ikuta, C. Y. and Rodriguez, C. A. and Pinheiro, S. R. and Figueroa, A. and Cho, S. N. and Mosavari, N. and Chuang, P. C. and Jou, R. and Zinsstag, J. and van Soolingen D., and Costello, E. and Aseffa, A. and Proano-Perez F., and Portaels, F. and Rigouts, L. and Cataldi, A. A. and Collins, D. M. and Boschiroli, M. L. and Hewinson, R. G. and Neto, J. S. and Surujballi, O. and Tadyon, K. and Botelho, A. and Zarraga, A. M. and Buller, N. and Skuce, R. and Michel, A. and Aranaz, A. and Kallenius, G. and Niemann, S. and Boniotti, M. B. and van Helden P. D., and Harris, B. and Zumarraga, M. J. and Kremer, K. and Gordon, S. V. and Jeon, B. Y.. (2011) European 1 : a globally important clonal complex of Mycobacterium bovis. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics and infectious diseases (MEEGID), Vol. 11, H. 6. pp. 1340-1351.