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Barrat-Charlaix, Pierre and Vaughan, Timothy G. and Neher, Richard A.. (2022) TreeKnit: Inferring ancestral reassortment graphs of influenza viruses. PLoS Computational Biology, 18 (8). e1010394.

Barrat-Charlaix, Pierre and Huddleston, John and Bedford, Trevor and Neher, Richard A.. (2021) Limited Predictability of Amino Acid Substitutions in Seasonal Influenza Viruses. Molecular Biology and Evolution , 38 (7). pp. 2767-2777.

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