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Ghosh, Souvik and Ataman, Meric and Bak, Maciej and Börsch, Anastasiya and Schmidt, Alexander and Buczak, Katarzyna and Martin, Georges and Dimitriades, Beatrice and Herrmann, Christina J. and Kanitz, Alexander and Zavolan, Mihaela. (2022) CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis. Nucleic Acids Research, 50 (6). pp. 3096-3114.

Coto-Llerena, Mairene and Tosti, Nadia and Taha-Mehlitz, Stephanie and Kancherla, Venkatesh and Paradiso, Viola and Gallon, John and Bianco, Gaia and Garofoli, Andrea and Ghosh, Souvik and Tang, Fengyuan and Ercan, Caner and Christofori, Gerhard M. and Matter, Matthias S. and Droeser, Raoul A. and Zavolan, Mihaela and Soysal, Savas D. and von Flüe, Markus and Kollmar, Otto and Terracciano, Luigi M. and Ng, Charlotte K. Y. and Piscuoglio, Salvatore. (2021) Transcriptional Enhancer Factor Domain Family member 4 Exerts an Oncogenic Role in Hepatocellular Carcinoma by Hippo-Independent Regulation of Heat Shock Protein 70 Family Members. Hepatology Communications, 5 (4). pp. 661-674.

Ghosh, Souvik and Börsch, Anastasiya and Ghosh, Shreemoyee and Zavolan, Mihaela. (2021) The transcriptional landscape of a hepatoma cell line grown on scaffolds of extracellular matrix proteins. BMC Genomics, 22 (1). p. 238.

Wang, Yuluan and Soneson, Charlotte and Malinowska, Anna L. and Laski, Artur and Ghosh, Souvik and Kanitz, Alexander and Gebert, Luca F. R. and Robinson, Mark D. and Hall, Jonathan. (2021) MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome. Nucleic Acids Research, 49 (1). pp. 25-37.

Ghosh, Souvik and Guimaraes, Joao C. and Lanzafame, Manuela and Schmidt, Alexander and Syed, Afzal Pasha and Dimitriades, Beatrice and Börsch, Anastasiya and Ghosh, Shreemoyee and Mittal, Nitish and Montavon, Thomas and Correia, Ana Luisa and Danner, Johannes and Meister, Gunter and Terracciano, Luigi M. and Pfeffer, Sébastien and Piscuoglio, Salvatore and Zavolan, Mihaela. (2020) Prevention of dsRNA-induced interferon signaling by AGO1x is linked to breast cancer cell proliferation. The EMBO Journal, 39 (18). e103922.

Gruber, Andreas J. and Schmidt, Ralf and Ghosh, Souvik and Martin, Georges and Gruber, Andreas R. and van Nimwegen, Erik and Zavolan, Mihaela. (2018) Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC. Genome biology, 19 (1). p. 44.

Rzepiela, Andrzej J. and Ghosh, Souvik and Breda, Jeremie and Vina-Vilaseca, Arnau and Syed, Afzal P. and Gruber, Andreas J. and Eschbach, Katja and Beisel, Christian and van Nimwegen, Erik and Zavolan, Mihaela. (2018) Single-cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction. Molecular systems biology, 14 (8). e8266.

Dimitrova, Yoana and Gruber, Andreas J. and Mittal, Nitish and Ghosh, Souvik and Dimitriades, Beatrice and Mathow, Daniel and Grandy, William Aaron and Christofori, Gerhard and Zavolan, Mihaela. (2017) TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition. Biology Direct, 12 (1). p. 8.

Martin, Georges and Schmidt, Ralf and Gruber, Andreas J. and Ghosh, Souvik and Keller, Walter and Zavolan, Mihaela. (2017) 3' End Sequencing Library Preparation with A-seq2. Journal of Visualized Experiments (128). e56129.

Gruber, Andreas J. and Schmidt, Ralf and Gruber, Andreas R. and Martin, Georges and Ghosh, Souvik and Belmadani, Manuel and Keller, Walter and Zavolan, Mihaela. (2016) A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation. Genome Research, 26 (8). pp. 1145-1159.