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Items where contributor is "Gumienny, Rafal Wojciech"

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2019

Haas, Juergen and Gumienny, Rafal and Barbato, Alessandro and Ackermann, Flavio and Tauriello, Gerardo and Bertoni, Martino and Studer, Gabriel and Smolinski, Anna and Schwede, Torsten. (2019) Introducing "best single template" models as reference baseline for the Continuous Automated Model Evaluation (CAMEO). Proteins, 87 (12). pp. 1378-1387.

Studer, Gabriel and Rempfer, Christine and Waterhouse, Andrew M. and Gumienny, Rafal and Haas, Juergen and Schwede, Torsten. (2019) QMEANDisCo - Distance Constraints Applied on Model Quality Estimation. Bioinformatics, 36 (6). pp. 1765-1771.

2018

Haas, Jürgen and Barbato, Alessandro and Behringer, Dario and Studer, Gabriel and Roth, Steven and Bertoni, Martino and Mostaguir, Khaled and Gumienny, Rafal and Schwede, Torsten. (2018) Continuous Automated Model Evaluation (CAMEO) Complementing the Critical Assessment of Structure Prediction in CASP12. Proteins, 86 Suppl 1. pp. 387-398.

Waterhouse, Andrew and Bertoni, Martino and Bienert, Stefan and Studer, Gabriel and Tauriello, Gerardo and Gumienny, Rafal and Heer, Florian T. and de Beer, Tjaart A. P. and Rempfer, Christine and Bordoli, Lorenza and Lepore, Rosalba and Schwede, Torsten. (2018) SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic acids research, 46 (W1). W296-W303.

2017

Gumienny, Rafal and Jedlinski, Dominik J. and Schmidt, Alexander and Gypas, Foivos and Martin, Georges and Vina-Vilaseca, Arnau and Zavolan, Mihaela. (2017) High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq. Nucleic Acids Research, 45 (5). pp. 2341-2353.

2016

Jorjani, Hadi and Kehr, Stephanie and Jedlinski, Dominik J. and Gumienny, Rafal and Hertel, Jana and Stadler, Peter F. and Zavolan, Mihaela and Gruber, Andreas R.. (2016) An updated human snoRNAome. Nucleic Acids Research, 44 (11). pp. 5068-5082.

Gumienny, Rafał Wojciech. Identification of small non-coding RNA targets using computational predictions and high throughput sequencing data. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

2015

Breda, Jeremie and Rzepiela, Andrzej J. and Gumienny, Rafal and van Nimwegen, Erik and Zavolan, Mihaela. (2015) Quantifying the strength of miRNA-target interactions. Methods, Vol. 85. pp. 90-99.

Gumienny, Rafal and Zavolan, Mihaela. (2015) Accurate transcriptome-wide prediction of microRNA targets and small interfering RNA off-targets with MIRZA-G. Nucleic Acids Research, 43 (3). pp. 1380-1391.

2014

Gruber, Andreas R. and Martin, Georges and Müller, Philipp and Schmidt, Alexander and Gruber, Andreas J. and Gumienny, Rafal and Mittal, Nitish and Jayachandran, Rajesh and Pieters, Jean and Keller, Walter and van Nimwegen, Erik and Zavolan, Mihaela. (2014) Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells. Nature Communications, 5 (5465). pp. 1-10.