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EUROCarbDB: An open-access platform for glycoinformatics

von der Lieth, C. -W. and Freire, A. A. and Blank, D. and Campbell, M. P. and Ceroni, A. and Damerell, D. D. and Dell, A. and Dwek, R. A. and Ernst, Beat and Frank, M. and Geyer, H. and Geyer, R. and Harrison, M. J. and Henrick, K. and Herget, M. and Hull, W. E. and Ionides, J. and Joshi, H. and Kamerling, J. P. and Leeflang, B. R. and Lütteke, T. and Lundborg, M. and Maass, K. and Merry, A. and Ranzinger, R. and Rosen, J. and Royle, L. and Rudd, P. M. and Schloissnig, S. and Stenutz, R. and Vrancken, W. F. and Widmalm, G. and Haslam, S. M.. (2011) EUROCarbDB: An open-access platform for glycoinformatics. Glycobiology, 21 (4). pp. 493-502.

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Official URL: http://edoc.unibas.ch/45931/

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Abstract

The EUROCarbDB project is a design study for a technical framework, which provides sophisticated, freely accessible, open-source informatics tools and databases to support glycobiology and glycomic research. EUROCarbDB is a relational database containing glycan structures, their biological context and, when available, primary and interpreted analytical data from high-performance liquid chromatography, mass spectrometry and nuclear magnetic resonance experiments. Database content can be accessed via a web-based user interface. The database is complemented by a suite of glycoinformatics tools, specifically designed to assist the elucidation and submission of glycan structure and experimental data when used in conjunction with contemporary carbohydrate research workflows. All software tools and source code are licensed under the terms of the Lesser General Public License, and publicly contributed structures and data are freely accessible. The public test version of the web interface to the EUROCarbDB can be found at http://www.ebi.ac.uk/eurocarb.
Faculties and Departments:05 Faculty of Science > Departement Pharmazeutische Wissenschaften > Pharmazie > Molekulare Pharmazie (Ernst)
UniBasel Contributors:Ernst, Beat
Item Type:Article, refereed
Article Subtype:Research Article
Publisher:Oxford University Press
ISSN:0959-6658
e-ISSN:1460-2423
Note:Publication type according to Uni Basel Research Database: Journal article
Identification Number:
Last Modified:16 Jan 2018 10:04
Deposited On:16 Jan 2018 10:04

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