Browse by Basel Contributors ID

2023

Durairaj, Janani and Waterhouse, Andrew M. and Mets, Toomas and Brodiazhenko, Tetiana and Abdullah, Minhal and Studer, Gabriel and Akdel, Mehmet and Andreeva, Antonina and Bateman, Alex and Tenson, Tanel and Hauryliuk, Vasili and Schwede, Torsten and Pereira, Joana. (2023) What is hidden in the darkness? Deep-learning assisted large-scale protein family curation uncovers novel protein families and folds.

Durairaj, Janani and Waterhouse, Andrew M. and Mets, Toomas and Brodiazhenko, Tetiana and Abdullah, Minhal and Studer, Gabriel and Tauriello, Gerardo and Akdel, Mehmet and Andreeva, Antonina and Bateman, Alex and Tenson, Tanel and Hauryliuk, Vasili and Schwede, Torsten and Pereira, Joana. (2023) Uncovering new families and folds in the natural protein universe. Nature, 622 (7983). pp. 646-653.

2022

Varadi, Mihaly and Nair, Sreenath and Sillitoe, Ian and Tauriello, Gerardo and Anyango, Stephen and Bienert, Stefan and Borges, Clemente and Deshpande, Mandar and Green, Tim and Hassabis, Demis and Hatos, Andras and Hegedus, Tamas and Hekkelman, Maarten L. and Joosten, Robbie and Jumper, John and Laydon, Agata and Molodenskiy, Dmitry and Piovesan, Damiano and Salladini, Edoardo and Salzberg, Steven L. and Sommer, Markus J. and Steinegger, Martin and Suhajda, Erzsebet and Svergun, Dmitri and Tenorio-Ku, Luiggi and Tosatto, Silvio and Tunyasuvunakool, Kathryn and Waterhouse, Andrew Mark and Schwede, Torsten and Orengo, Christine and Velankar, Sameer. (2022) 3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources. GigaScience, 11. giac118.

2020

Gervasoni, Silvia and Vistoli, Giulio and Talarico, Carmine and Manelfi, Candida and Beccari, Andrea R. and Studer, Gabriel and Tauriello, Gerardo and Waterhouse, Andrew Mark and Schwede, Torsten and Pedretti, Alessandro. (2020) A Comprehensive Mapping of the Druggable Cavities within the SARS-CoV-2 Therapeutically Relevant Proteins by Combining Pocket and Docking Searches as Implemented in Pockets 2.0. International journal of molecular sciences, 21 (14). p. 5152.