edoc

Force Field Refinement from NMR Scalar Couplings

Huang, J. and Meuwly, M.. (2012) Force Field Refinement from NMR Scalar Couplings. Chemical Physics, 396. pp. 116-123.

Full text not available from this repository.

Official URL: http://edoc.unibas.ch/dok/A6002062

Downloads: Statistics Overview

Abstract

NMR observables contain valuable information about the protein dynamics sampling a high-dimensional potential energy surface. Depending on the observable, the dynamics is sensitive to different time-windows. Scalar coupling constants h3JNC′h3JNC′ reflect the pico- to nanosecond motions associated with the intermolecular hydrogen bond network. Including an explicit H-bond in the molecular mechanics with proton transfer (MMPT) potential allows us to reproduce experimentally determined h3JNC′h3JNC′ couplings to within 0.02 Hz at best for ubiquitin and protein G. This is based on taking account of the chemically changing environment by grouping the H-bonds into up to seven classes. However, grouping them into two classes already reduces the RMSD between computed and observed h3JNC′h3JNC′ couplings by almost 50%. Thus, using ensemble-averaged data with two classes of H-bonds leads to substantially improved scalar couplings from simulations with accurate force fields.
Faculties and Departments:05 Faculty of Science > Departement Chemie > Chemie > Physikalische Chemie (Meuwly)
UniBasel Contributors:Meuwly, Markus
Item Type:Article, refereed
Publisher:Elsevier
ISSN:0301-0104
Note:Publication type according to Uni Basel Research Database: Journal article
Identification Number:
Last Modified:07 Dec 2016 12:41
Deposited On:08 Nov 2012 16:10

Repository Staff Only: item control page