Items where Author is "Zopfi, Jakob"

2023

Bartosiewicz, Maciej and Venetz, Jessica and Laeubli, Saskia and Steiner, Oscar Sepulveda and Bouffard, Damien and Zopfi, Jakob and Lehmann, Moritz F.. (2023) Detritus-hosted methanogenesis sustains the methane paradox in an alpine lake. Limnology and Oceanography, 68 (1). pp. 248-264.

Su, Guangyi and Lehmann, Moritz F. and Tischer, Jana and Weber, Yuki and Lepori, Fabio and Walser, Jean-Claude and Niemann, Helge and Zopfi, Jakob. (2023) Water column dynamics control nitrite-dependent anaerobic methane oxidation by Candidatus "Methylomirabilis" in stratified lake basins. ISME Journal, 17 (5). pp. 693-702.

2022

Damste, Jaap S. Sinninghe and Weber, Yuki and Zopfi, Jakob and Lehmann, Moritz F. and Niemann, Helge. (2022) Distributions and sources of isoprenoidal GDGTs in Lake Lugano and other central European (peri-)alpine lakes: Lessons for their use as paleotemperature proxies. Quaternary Science Reviews, 277. ARTN 107352.

Tischer, Jana and Zopfi, Jakob and Frey, Claudia and Magyar, Paul M. and Brand, Andreas and Oswald, Kirsten and Jegge, Corinne and Frame, Caitlin H. and Miracle, María R. and Sòria-Perpinyà, Xavier and Vicente, Eduardo and Lehmann, Moritz F.. (2022) Isotopic signatures of biotic and abiotic N2O production and consumption in the water column of meromictic, ferruginous Lake La Cruz (Spain). Limnology and Oceanography, 67 (8). pp. 1760-1775.

Su, Guangyi and Zopfi, Jakob and Niemann, Helge and Lehmann, Moritz F.. (2022) Multiple Groups of Methanotrophic Bacteria Mediate Methane Oxidation in Anoxic Lake Sediments. Frontiers in Microbiology, 13. ARTN 864630.

2021

van Grinsven, Sigrid and Oswald, Kirsten and Wehrli, Bernhard and Jegge, Corinne and Zopfi, Jakob and Lehmann, Moritz F. and Schubert, Carsten J.. (2021) Methane oxidation in the waters of a humic-rich boreal lake stimulated by photosynthesis, nitrite, Fe(III) and humics. Biogeosciences, 18 (10). pp. 3087-3101.

Blattner, Lucas and Ebner, Joshua and Zopfi, Jakob and von Fumetti, Stefanie. (2021) Targeted non-invasive bioindicator species detection in eDNA water samples to assess and monitor the integrity of vulnerable alpine freshwater environments. Ecological indicators, 129. p. 107916.

2020

Lehmann, Moritz F. and Carstens, Dörte and Deek, Astrid and McCarthy, Matthew and Schubert, Carsten J. and Zopfi, Jakob. (2020) Amino acid and amino sugar compositional changes during in vitro degradation of algal organic matter indicate rapid bacterial re-synthesis. Geochimica et cosmochimica acta, 283. pp. 67-84.

Cojean, Adeline N. Y. and Lehmann, Moritz F. and Robertson, Elizabeth K. and Thamdrup, Bo and Zopfi, Jakob. (2020) Controls of H2S, Fe2 +, and Mn2 + on Microbial NO3–-Reducing Processes in Sediments of an Eutrophic Lake. Frontiers in Microbiology, 11. p. 1158.

Bagnoud, Alexandre and Guye-Humbert, Sylvia and Schloter-Hai, Brigitte and Schloter, Michael and Zopfi, Jakob. (2020) Environmental factors determining distribution and activity of anammox bacteria in minerotrophic fen soils. FEMS Microbiology Ecology, 96 (2). fiz191.

Wirth, Stefanie B. and Bouffard, Damien and Zopfi, Jakob. (2020) Lacustrine groundwater discharge through giant pockmarks (Lake Neuchatel, Switzerland). Frontiers in Water, 2. p. 13.

Su, Guangyi and Zopfi, Jakob and Yao, Haoyi and Steinle, Lea and Niemann, Helge and Lehmann, Moritz F.. (2020) Manganese/iron-supported sulfate-dependent anaerobic oxidation of methane by archaea in lake sediments. Limnology and Oceanography, 65 (4). pp. 863-875.

Hu, Haiyan and Wang, Baolin and Bravo, Andrea G. and Björn, Erik and Skyllberg, Ulf and Amouroux, David and Tessier, Emmanuel and Zopfi, Jakob and Feng, Xinbin and Bishop, Kevin and Nilsson, Mats B. and Bertilsson, Stefan. (2020) Shifts in mercury methylation across a peatland chronosequence: From sulfate reduction to methanogenesis and syntrophy. Journal of Hazardous Materials, 387. p. 121967.

2019

Kallies, René and Kiesel, Bärbel and Schmidt, Matthias and Ghanem, Nawras and Zopfi, Jakob and Hackermüller, Jörg and Harms, Hauke and Wick, Lukas Y. and Chatzinotas, Antonis. (2019) Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6. Marine Genomics, 47. p. 100667.

10 January 2018

Bravo, Andrea G. and Zopfi, Jakob and Buck, Moritz and Xu, Jingying and Bertilsson, Stefan and Schaefer, Jeffra K. and Poté, John and Cosio, Claudia. (2018) Geobacteraceae are important members of mercury-methylating microbial communities of sediments impacted by wastewater releases. ISME Journal, 12 (3). pp. 802-812.

2018

Steinle, Lea and Knittel, Katrin and Felber, Nicole and Casalino, Claudia and de Lange, Gert and Tessarolo, Chiara and Stadnitskaia, Alina and Damste, Jaap S. S. and Zopfi, Jakob and Lehmann, Moritz F. and Treude, Tina and Niemann, Helge. (2018) Life on the edge: active microbial communities in the Kryos MgCl(2-)brine basin at very low water activity. The ISME Journal, 12 (6). pp. 1414-1426.

Weber, Yuki and Damste, Jaap Sinninghe and Zopfi, Jakob and De Jonge, Cindy and Gilli, Adrian and Schubert, Carsten J. and Lepori, Fabio and Lehmann, Moritz F. and Niemann, Helge. (2018) Redox-dependent niche differentiation provides evidence for multiple bacterial sources of glycerol tetraether lipids in lakes. Proceedings of the National Academy of Sciences of the United States of America, 115 (43). pp. 10926-10931.

Zimmermann, Rosalie E. and Ribolzi, Olivier and Pierret, Alain and Rattanavong, Sayaphet and Robinson, Matthew T. and Newton, Paul N. and Davong, Viengmon and Auda, Yves and Zopfi, Jakob and Dance, David A. B.. (2018) Rivers as carriers and potential sentinels for Burkholderia pseudomallei in Laos. Scientific Reports, 8 (1). p. 8674.

24 November 2017

Stopelli, Emiliano and Conen, Franz and Guilbaud, Caroline and Zopfi, Jakob and Alewell, Christine and Morris, Cindy. (2017) Ice nucleators have shorter persistence in the atmosphere than other airborne bacteria. 14 (5).

2017

Kallies, René and Kiesel, Bärbel and Zopfi, Jakob and Wick, Lukas Y. and Chatzinotas, Antonis. (2017) Complete Genome Sequence of Alteromonas Virus vB_AspP-H4/4. Genome Announcements, 5 (43). e00914-e00917.

Kallies, René and Kiesel, Bärbel and Schmidt, Matthias and Kacza, Johannes and Ghanem, Nawras and Narr, Anja and Zopfi, Jakob and Wick, Lukas Y. and Hackermüller, Jörg and Harms, Hauke and Chatzinotas, Antonis. (2017) Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies. Standards in Genomic Sciences, 12 (20).

Steinle, Lea and Maltby, Johanna and Treude, Tina and Kock, Annette and Bange, Hermann W. and Engbersen, Nadine and Zopfi, Jakob and Lehmann, Moritz F. and Niemann, Helge. (2017) Effects of low oxygen concentrations on aerobic methane oxidation in seasonally hypoxic coastal waters. Biogeosciences, 14 (6). pp. 1631-1645.

Stopelli, Emiliano and Conen, Franz and Guilbaud, Caroline and Zopfi, Jakob and Alewell, Christine and Morris, Cindy E.. (2017) Ice nucleators, bacterial cells and Pseudomonas syringae in precipitation at Jungfraujoch. Biogeosciences, 14 (5). pp. 1189-1196.

Camacho, Antonio and Walter, Xavier A. and Picazo, Antonio and Zopfi, Jakob. (2017) Photoferrotrophy: Remains of an Ancient Photosynthesis in Modern Environments. Frontiers in Microbiology, 8. p. 323.

2016

Wenk, Christine B. and Frame, Caitlin H. and Koba, Keisuke and Casciotti, Karen L. and Veronesi, Mauro and Niemann, Helge and Schubert, Carsten J. and Yoshida, Naohiro and Toyoda, Sakae and Makabe, Akiko and Zopfi, Jakob and Lehmann, Moritz F.. (2016) Differential N2O dynamics in two oxygen-deficient lake basins revealed by stable isotope and isotopomer distributions. Limnology and Oceanography, 61 (5). pp. 1735-1749.

Steinle, Lea and Schmidt, Mark and Bryant, Lee and Haeckel, Matthias and Linke, Peter and Sommer, Stefan and Zopfi, Jakob and Lehmann, Moritz F. and Treude, Tina and Niemannn, Helge. (2016) Linked sediment and water-column methanotrophy at a man-made gas blowout in the North Sea: Implications for methane budgeting in seasonally stratified shallow seas. Limnology and Oceanography, 61. pp. 367-386.

Oswald, Kirsten and Jegge, Corinne and Tischer, Jana and Berg, Jasmine and Brand, Andreas and Miracle, Maria R. and Soria, Xavier and Vicente, Eduardo and Lehmann, Moritz F. and Zopfi, Jakob and Schubert, Carsten J.. (2016) Methanotrophy under Versatile Conditions in the Water Column of the Ferruginous Meromictic Lake La Cruz (Spain). Frontiers in Microbiology, 7. p. 1762.

Jaquet, Stéphan and Junier, Pilar and Zopfi, Jakob and Brandl, Helmut and Curtis, Thomas. (2016) Microbiologie. In: Dans les Abysses du Léman. Lausanne, pp. 146-168.

October 2015

Blees, Jan and Niemann, Helge and Erne, Markus and Zopfi, Jakob and Schubert, Carsten J. and Lehmann, Moritz F.. (2015) Spatial variations in surface water methane super-saturation and emission in Lake Lugano, southern Switzerland. Aquatic sciences, 77 (4). pp. 535-545.

1 September 2015

Bravo, Andrea Garcia and Bouchet, Sylvain and Guédron, Stéphane and Amouroux, David and Dominik, Janusz and Zopfi, Jakob. (2015) High methylmercury production under ferruginous conditions in sediments impacted by sewage treatment plant discharges. Water research, 80. pp. 245-255.

March 2015

Naeher, Sebastian and Huguet, Arnaud and Roose-Amsaleg, Celine L. and Laverman, Anniet M. and Fosse, Celine and Lehmann, Moritz F. and Derenne, Sylvie and Zopfi, Jakob. (2015) Molecular and geochemical constraints on anaerobic ammonium oxidation (anammox) in a riparian zone of the Seine Estuary (France). Biogeochemistry, 123 (1-2). pp. 237-250.

2014

Blees, Jan and Niemann, Helge and Wenk, Christine B. and Zopfi, Jakob and Schubert, Carsten J. and Jenzer, Joel S. and Veronesi, Mauro and Lehmann, Moritz F.. (2014) Bacterial methanotrophs drive the formation of a seasonal anoxic benthic nepheloid layer in an alpine lake. Limnology and oceanography, Vol. 59, H. 4. pp. 1410-1420.

Wenk, Christine B. and Zopfi, Jakob and Blees, Jan and Veronesi, Mauro L. and Niemann, Helge and Lehmann, Moritz F.. (2014) Community N and O isotope fractionation by sulfide-dependent denitrification and anammox in a stratified lacustrine water column. Geochimica et cosmochimica acta, Vol. 125. pp. 551-563.

Bravo, Andrea Garcia and Cosio, Claudia and Amouroux, David and Zopfi, Jakob and Cheualley, Pierre-Alain and Spangenberg, Jorge E. and Ungureanu, Viorel-Gheorghe and Dominik, Janusz. (2014) Extremely elevated methyl mercury levels in water, sediment and organisms in a Romanian reservoir affected by release of mercury from a chlor-alkali plant. Water research, Vol. 49. pp. 391-405.

Blees, Jan and Niemann, Helge and Wenk, Christine B. and Zopfi, Jakob and Schubert, Carsten J. and Kirf, Matthias T. and Veronesi, Mauro and Hitz, Carmen and Lehmann, Moritz F.. (2014) Micro-aerobic bacterial methane oxidation in the chemocline and anoxic water column of deep south-Alpine Lake Lugano (Switzerland). Limnology and oceanography, Vol. 59, H. 2. pp. 311-324.

Wenk, Christine B. and Zopfi, Jakob and Blees, Jan and Gardner, Wayne S. and McCarthy, Mark and Niemann, Helge and Veronesi, Mauro and Lehmann, Moritz F.. (2014) Partitioning between benthic and pelagic nitrate reduction in the Lake Lugano south basin. Limnology and oceanography, Vol. 59, H. 4. pp. 1421-1433.

Walter, Xavier A. and Picazo, Antonio and Miracle, Maria R. and Vicente, Eduardo and Camacho, Antonio and Aragno, Michel and Zopfi, Jakob. (2014) Phototrophic Fe(II)-oxidation in the chemocline of a ferruginous meromictic lake. Frontiers in microbiology, Vol. 5. p. 713.

D'Alessandro, Marco and Erb, Matthias and Ton, Jurriaan and Brandenburg, Anna and Karlen, Danielle and Zopfi, Jakob and Turlings, Ted C. J.. (2014) Volatiles produced by soil-borne endophytic bacteria increase plant pathogen resistance and affect tritrophic interactions. Plant, Cell and Environment, 37 (4). pp. 813-826.

2013

Wenk, Christine B. and Blees, Jan and Zopfi, Jakob and Veronesi, Mauro and Bourbonnais, Annie and Schubert, Carsten J. and Niemann, Helge and Lehmann, Moritz F.. (2013) Anaerobic ammonium oxidation (anammox) bacteria and sulfide-dependent denitrifiers coexist in the water column of a meromictic south-alpine lake. Limnology and Oceanography, 58 (1). pp. 1-12.

2012

Humbert, Sylvia and Zopfi, Jakob and Tarnawski Sonia-Estelle, . (2012) Abundance of anammox bacteria in different wetland soils. Environmental microbiology reports, Vol. 4, H. 5 , S. 484–490.

Martin, Gaetan and Guggiari, Matteo and Bravo, Daniel and Zopfi, Jakob and Cailleau, Guillaume and Aragno, Michel and Job, Daniel and Verrecchia, Eric and Junier, Pilar. (2012) Fungi, bacteria and soil pH : the oxalate-carbonate pathway as a model for metabolic interaction. Environmental microbiology, Vol. 14, H. 11 , S. 2960–2970.