Items where Author is "Klimkait, Thomas"

2020

Brown, Jennifer Anne and Ringera, Isaac and Luoga, Ezekiel and Cheleboi, Molisana and Kimera, Namvua and Muhairwe, Josephine and Kayembe, Buntshi Paulin and Molapo Hlasoa, Mosa and Kabundi, Lorraine and Yav, Ching Wey David and Mothobi, Buoang and Thahane, Lineo and Amstutz, Alain and Bachmann, Nadine and Mollel, Getrud Joseph and Bresser, Moniek and Glass, Tracy Renée and Paris, Daniel Henry and Klimkait, Thomas and Weisser, Maja and Labhardt, Niklaus Daniel. (2020) Genotype-Informed Versus Empiric Management Of VirEmia (GIVE MOVE): study protocol of an open-label randomised clinical trial in children and adolescents living with HIV in Lesotho and Tanzania. BMC infectious diseases, 20. p. 773.

Wan, Chenjie and Bachmann, Nadine and Mitov, Venelin and Blanquart, François and Céspedes, Susana Posada and Turk, Teja and Neumann, Kathrin and Beerenwinkel, Niko and Bogojeska, Jasmina and Fellay, Jacques and Roth, Volker and Böni, Jürg and Perreau, Matthieu and Klimkait, Thomas and Yerly, Sabine and Battegay, Manuel and Walti, Laura and Calmy, Alexandra and Vernazza, Pietro and Bernasconi, Enos and Cavassini, Matthias and Metzner, Karin J. and Günthard, Huldrych F. and Kouyos, Roger D. and Swiss HIV Cohort Study, . (2020) Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART. Nature Communications, 11 (1). p. 5542.

Bircher, Rahel E. and Ntamatungiro, Alex J. and Glass, Tracy R. and Mnzava, Dorcas and Nyuri, Amina and Mapesi, Herry and Paris, Daniel H. and Battegay, Manuel and Klimkait, Thomas and Weisser, Maja and Kiularco study group, . (2020) High failure rates of protease inhibitor-based antiretroviral treatment in rural Tanzania - a prospective cohort study. PLoS ONE, 15 (1). e0227600.

Amstutz, Alain and Lejone, Thabo Ishmael and Khesa, Lefu and Muhairwe, Josephine and Bresser, Moniek and Vanobberghen, Fiona and Kopo, Mathebe and Kao, Mpho and Nsakala, Bienvenu Lengo and Tlali, Katleho and Klimkait, Thomas and Battegay, Manuel and Labhardt, Niklaus Daniel and Glass, Tracy Renée. (2020) Home-based oral self-testing for absent and declining individuals during a door-to-door HIV testing campaign in rural Lesotho (HOSENG): a cluster-randomised trial. The lancet. HIV, 7 (11). e752-e761.

Thorball, Christian W. and Borghesi, Alessandro and Bachmann, Nadine and Von Siebenthal, Chantal and Vongrad, Valentina and Turk, Teja and Neumann, Kathrin and Beerenwinkel, Niko and Bogojeska, Jasmina and Roth, Volker and Kok, Yik Lim and Parbhoo, Sonali and Wieser, Mario and Böni, Jürg and Perreau, Matthieu and Klimkait, Thomas and Yerly, Sabine and Battegay, Manuel and Rauch, Andri and Schmid, Patrick and Bernasconi, Enos and Cavassini, Matthias and Kouyos, Roger D. and Günthard, Huldrych F. and Metzner, Karin J. and Fellay, Jacques and Swiss HIV Cohort Study, . (2020) Host Genomics of the HIV-1 Reservoir Size and Its Decay Rate During Suppressive Antiretroviral Treatment. Journal of Acquired Immune Deficiency Syndromes, 85 (4). pp. 517-524.

Amstutz, Alain and Nsakala, Bienvenu Lengo and Vanobberghen, Fiona and Muhairwe, Josephine and Glass, Tracy Renée and Namane, Tilo and Mpholo, Tlali and Battegay, Manuel and Klimkait, Thomas and Labhardt, Niklaus Daniel. (2020) Switch to second-line versus continued first-line antiretroviral therapy for patients with low-level HIV-1 viremia: an open-label randomized controlled trial in Lesotho. PLoS medicine, 17 (9). e1003325.

2019

Labhardt, Niklaus Daniel and Ringera, Isaac and Lejone, Thabo Ishmael and Amstutz, Alain and Klimkait, Thomas and Muhairwe, Josephine and Glass, Tracy Renee. (2019) Effect and cost of two successive home visits to increase HIV testing coverage: a prospective study in Lesotho, Southern Africa. BMC public health, 19. p. 1441.

Amstutz, Alain and Brown, Jennifer Anne and Ringera, Isaac and Muhairwe, Josephine and Lejone, Thabo Ishmael and Klimkait, Thomas and Glass, Tracy Renée and Labhardt, Niklaus Daniel. (2019) Engagement in care, viral suppression, drug resistance and reasons for non-engagement after home-based same-day ART initiation in Lesotho: a two-year follow-up of the CASCADE trial. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 71 (10). pp. 2608-2614.

Bachmann, Nadine and von Braun, Amrei and Labhardt, Niklaus D. and Kadelka, Claus and Günthard, Huldrych F. and Sekaggya-Wiltshire, Christine and Castelnuovo, Barbara and Kambugu, Andrew and Lejone, Thabo I. and Böni, Jürg and Yerly, Sabine and Perreau, Matthieu and Klimkait, Thomas and Kouyos, Roger D. and Fehr, Jan and Swiss HIV Cohort Study, . (2019) Importance of routine viral load monitoring : higher levels of resistance at ART failure in Uganda and Lesotho compared with Switzerland. The journal of antimicrobial chemotherapy, 74 (2). pp. 468-472.

Mkindi, Catherine Gerald and Marandu, Elias Antony and Masawa, Ngisi and Bani, Farida and Nyuri, Amina and Byakuzana, Theonestina and Klimkait, Thomas and Ding, Song and Pantaleo, Giuseppe and Battegay, Manuel and Orlova-Fink, Nina and Weisser-Rohacek, Maja and Daubenberger, Claudia. (2019) Safety and tolerance of lymph node biopsies from chronic HIV-1 volunteers in rural Tanzania. BMC Research Notes, 12. p. 561.

Amstutz, Alain and Lejone, Thabo Ishmael and Khesa, Lefu and Muhairwe, Josephine and Nsakala, Bienvenu Lengo and Tlali, Katleho and Bresser, Moniek and Vanobberghen, Fiona and Kopo, Mathebe and Kao, Mpho and Klimkait, Thomas and Battegay, Manuel and Labhardt, Niklaus Daniel and Glass, Tracy Renée. (2019) The HOSENG trial - effect of the provision of oral self-testing for absent and refusing individuals during a door-to-door HIV-testing campaign on testing coverage : protocol of a cluster-randomized clinical trial in rural Lesotho. Trials, 20. p. 496.

Glass, Tracy Renee and Motaboli, Lipontso and Nsakala, Bienvenu and Lerotholi, Malebanye and Vanobberghen, Fiona and Amstutz, Alain and Lejone, Thabo Ishmael and Muhairwe, Josephine and Klimkait, Thomas and Labhardt, Niklaus Daniel. (2019) The viral load monitoring cascade in a resource-limited setting : a prospective multicentre cohort study after introduction of routine viral load monitoring in rural Lesotho. PLoS ONE, 14 (8). e0220337.

Amstutz, Alain and Lejone, Thabo Ishmael and Khesa, Lefu and Muhairwe, Josephine and Nsakala, Bienvenu Lengo and Tlali, Katleho and Bresser, Moniek and Tediosi, Fabrizio and Kopo, Mathebe and Kao, Mpho and Klimkait, Thomas and Battegay, Manuel and Glass, Tracy Renée and Labhardt, Niklaus Daniel. (2019) VIBRA trial - Effect of village-based refill of ART following home-based same-day ART initiation vs clinic-based ART refill on viral suppression among individuals living with HIV : protocol of a cluster-randomized clinical trial in rural Lesotho. Trials, 20. p. 522.

2018

Amstutz, Alain and Nsakala, Bienvenu Lengo and Vanobberghen, Fiona and Muhairwe, Josephine and Glass, Tracy Renée and Achieng, Beatrice and Sepeka, Mamorena and Tlali, Katleho and Sao, Lebohang and Thin, Kyaw and Klimkait, Thomas and Battegay, Manuel and Labhardt, Niklaus Daniel. (2018) SESOTHO trial ("Switch Either near Suppression Or THOusand") - switch to second-line versus WHO-guided standard of care for unsuppressed patients on first-line ART with viremia below 1000 copies/mL: protocol of a multicenter, parallel-group, open-label, randomized clinical trial in Lesotho, Southern Africa. BMC infectious diseases, 18 (1). p. 76.

Lejone, Thabo Ishmael and Ringera, Isaac and Cheleboi, Molisana and Wagner, Sarah and Muhairwe, Josephine and Klimkait, Thomas and Labhardt, Niklaus D.. (2018) The treatment cascade in children with unsuppressed viral load - a reality check in rural Lesotho, Southern Africa. Journal of Acquired Immune Deficiency Syndromes, 77 (3). pp. 250-256.

2017

Turk, Teja and Bachmann, Nadine and Kadelka, Claus and Böni, Jürg and Yerly, Sabine and Aubert, Vincent and Klimkait, Thomas and Battegay, Manuel and Bernasconi, Enos and Calmy, Alexandra and Cavassini, Matthias and Furrer, Hansjakob and Hoffmann, Matthias and Günthard, Huldrych F. and Kouyos, Roger D. and Swiss HIV Cohort Study, . (2017) Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis. eLife, 6. e28721.

Letang, Emilio and Verdastus Kalinjuma, Aneth and Glass, Tracy R. and Gamell, Anna and Mapesi, Herry and Sikalengo, George and Luwanda, Lameck Bonaventure and Mnzava, Dorcas and Ntamatungiro, Alex J. and Ndaki, Regina and Francis, Gideon and Vanobbergen, Fiona and Furrer, Hansjakob and Klimkait, Thomas and Felger, Ingrid and Tanner, Marcel and Hazt, Christoph and Weisser, Maja and Battegay, Manuel and Kiularco Study Group, . (2017) Cohort profile: the Kilombero and Ulanga Antiretroviral Cohort (KIULARCO): a prospective HIV cohort in rural Tanzania. Swiss Medical Weekly, 147. w14485.

Muri, Lukas and Gamell, Anna and Ntamatungiro, Alex J. and Glass, Tracy R. and Luwanda, Lameck B. and Battegay, Manuel and Furrer, Hansjakob and Hatz, Christoph and Tanner, Marcel and Felger, Ingrid and Klimkait, Thomas and Letang, Emilio and Kiularco Study Group, . (2017) Development of HIV drug resistance and therapeutic failure in children and adolescents in rural Tanzania : an emerging public health concern. AIDS, 31 (1). pp. 61-70.

Ntamatungiro, Alex J. and Muri, Lukas and Glass, Tracy R. and Erb, Stefan and Battegay, Manuel and Furrer, Hansjakob and Hatz, Christoph and Tanner, Marcel and Felger, Ingrid and Klimkait, Thomas and Letang, Emilio and Kiularco Study Group, . (2017) Strengthening HIV therapy and care in rural Tanzania affects rates of viral suppression. The journal of antimicrobial chemotherapy, 72 (7). pp. 2069-2074.

Labhardt, Niklaus Daniel and Ringera, Isaac and Lejone, Thabo Ishmael and Cheleboi, Molisana and Wagner, Sarah and Muhairwe, Josephine and Klimkait, Thomas. (2017) When patients fail UNAIDS' last 90 - the "failure cascade" beyond 90-90-90 in rural Lesotho, Southern Africa: a prospective cohort study. Journal of the International AIDS Society, 20 (1). pp. 1-10.

2016

Gamell, Anna and Muri, Lukas and Ntamatungiro, Alex and Nyogea, Daniel and Luwanda, Lameck B. and Hatz, Christoph and Battegay, Manuel and Felger, Ingrid and Tanner, Marcel and Klimkait, Thomas and Letang, Emilio. (2016) A case series of acquired drug resistance-associated mutations in human immunodeficiency virus-infected children : an emerging public health concern in rural Africa. Open forum infectious diseases, 3 (1). ofv199.

Cerutti, Bernard and Broers, Barbara and Masetsibi, Motlomelo and Faturiyele, Olatunbosun and Toti-Mokoteli, Likabelo and Motlatsi, Mokete and Bader, Joelle and Klimkait, Thomas and Labhardt, Niklaus D.. (2016) Alcohol use and depression: link with adherence and viral suppression in adult patients on antiretroviral therapy in rural Lesotho, Southern Africa: a cross-sectional study. BMC Public Health, 16. p. 947.

Labhardt, Niklaus Daniel and Ringera, Isaac and Lejone, Thabo Ishmael and Masethothi, Phofu and Thaanyane, T'sepang and Kamele, Mashaete and Gupta, Ravi Shankar and Thin, Kyaw and Cerutti, Bernard and Klimkait, Thomas and Fritz, Christiane and Glass, Tracy Renée. (2016) Same day ART initiation versus clinic-based pre-ART assessment and counselling for individuals newly tested HIV-positive during community-based HIV testing in rural Lesotho - a randomized controlled trial (CASCADE trial). BMC public health, 16. p. 329.

Labhardt, Niklaus D. and Bader, Joëlle and Lejone, Thabo Ishmael and Ringera, Isaac and Hobbins, Michael A. and Fritz, Christiane and Ehmer, Jochen and Cerutti, Bernard and Puga, Daniel and Klimkait, Thomas. (2016) Should viral load thresholds be lowered? Revisiting the WHO definition for virologic failure in patients on antiretroviral therapy in resource-limited settings. Medicine, 95 (28). e3985.

Puga, Daniel and Cerutti, Bernard and Molisana, Cheleboi and Bader, Joëlle and Faturiyele, Olatunbosun and Ringera, Isaac and Lejone, Thabo and Pfeiffer, Karolin and Klimkait, Thomas and Labhardt, Niklaus D.. (2016) Still far from 90-90-90 : virologic outcomes of children on antiretroviral therapy in nurse-led clinics in rural Lesotho. Pediatric infectious disease journal, 35 (1). pp. 78-80.

2015

Edwards, Suzanne and Stucki, Heinz and Bader, Joëlle and Vidal, Vincent and Kaiser, Rolf and Battegay, Manuel and Klimkait, Thomas and Swiss, H. I. V. Cohort Study. (2015) A diagnostic HIV-1 tropism system based on sequence relatedness. Journal of Clinical Microbiology, 53 (2). pp. 597-610.

Wagner, Sarah and Kurz, Mario and Klimkait, Thomas and Swiss, H. I. V. Cohort Study. (2015) Algorithm evolution for drug resistance prediction: comparison of systems for HIV-1 genotyping. Antiviral Therapy, 20 (6). pp. 661-665.

Yang, Wan-Lin and Kouyos, Roger D. and Scherrer, Alexandra U. and Boni, Jürg and Shah, Cyril and Yerly, Sabine and Klimkait, Thomas and Aubert, Vincent and Hirzel, Cédric and Battegay, Manuel and Cavassini, Matthias and Bernasconi, Enos and Vernazza, Pietro and Held, Leonhard and Ledergerber, Bruno and Günthard, Huldrych F. and Swiss, H. I. V. Cohort Study and Swiss, H. I. V. Cohort Study Shcs. (2015) Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study. Journal of Antimicrobial Chemotherapy, 70 (12). pp. 3323-3331.

Yang, Wan-Lin and Kouyos, Roger and Scherrer, Alexandra U. and Boni, Jürg and Shah, Cyril and Yerly, Sabine and Klimkait, Thomas and Aubert, Vincent and Furrer, Hansjakob and Battegay, Manuel and Cavassini, Matthias and Bernasconi, Enos and Vernazza, Pietro and Held, Leonhard and Ledergerber, Bruno and Gunthard, Huldrych F. and Swiss, H. I. V. Cohort Study. (2015) Assessing the Paradox Between Transmitted and Acquired HIV Type 1 Drug Resistance Mutations in the Swiss HIV Cohort Study From 1998 to 2012. The Journal of Infectious Diseases, 212 (1). pp. 28-38.

Schupbach, Jörg and Niederhauser, Christoph and Yerly, Sabine and Regenass, Stephan and Gorgievski, Meri and Aubert, Vincent and Ciardo, Diana and Klimkait, Thomas and Dollenmaier, Günter and Andreutti, Corinne and Martinetti, Gladys and Brandenberger, Marcel and Gebhardt, Martin D.. (2015) Decreasing Proportion of Recent Infections among Newly Diagnosed HIV-1 Cases in Switzerland, 2008 to 2013 Based on Line-Immunoassay-Based Algorithms. PLoS One, 10 (7). e0131828.

Heyman, Heino Martin and Senejoux, Francois and Seibert, Isabell and Klimkait, Thomas and Maharaj, Vinesh Jaichand and Meyer, Jacobus Johannes. (2015) Identification of anti-HIV active dicaffeoylquinic- and tricaffeoylquinic acids in Helichrysum populifolium by NMR-based metabolomic guided fractionation. Fitoterapia, 103. pp. 155-164.

Labhardt, Niklaus D. and Bader, Joëlle and Lejone, Thabo Ismael and Ringera, Isaac and Puga, Daniel and Glass, Tracy R. and Klimkait, Thomas. (2015) Is zidovudine first-line therapy virologically comparable to tenofovir in resource-limited settings? Tropical medicine and international health, 20 (7). pp. 914-918.

Yang, Wan-Lin and Kouyos, Roger D. and Boni, Jürg and Yerly, Sabine and Klimkait, Thomas and Aubert, Vincent and Scherrer, Alexandra U. and Shilaih, Mohaned and Hinkley, Trevor and Petropoulos, Christos and Bonhoeffer, Sebastian and Gunthard, Huldrych F. and Swiss, H. I. V. Cohort Study. (2015) Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds. PLoS Pathogens, 11 (3). e1004722.

2014

Labhardt, Niklaus Daniel and Bader, Joëlle and Ramoeletsi, Mojakisane and Kamele, Mashaete and Lejone, Thabo Ishmael and Cheleboi, Molisana and Motlatsi, Mokete M. and Ehmer, Jochen and Faturyiele, Olatunbosun and Puga, Daniel and Klimkait, Thomas. (2014) Clinical and socio-demographic predictors for virologic failure in rural Southern Africa: preliminary findings from CART-1. Journal of the International AIDS Society, 17 (4 Suppl 3). p. 19666.

Kouyos, Roger D. and Rauch, Andri and Böni, Jürg and Yerly, Sabine and Shah, Cyril and Aubert, Vincent and Klimkait, Thomas and Kovari, Helen and Calmy, Alexandra and Cavassini, Matthias and Battegay, Manuel and Vernazza, Pietro L. and Bernasconi, Enos and Ledergerber, Bruno and Günthard, Huldrych F. and Swiss HIV Cohort Study, . (2014) Clustering of HCV coinfections on HIV phylogeny indicates domestic and sexual transmission of HCV. International Journal of Epidemiology, 43 (3). pp. 887-896.

Masimba, Pax and Gare, Janet and Klimkait, Thomas and Tanner, Marcel and Felger, Ingrid. (2014) Development of a simple microarray for genotyping HIV-1 drug resistance mutations in the reverse transcriptase gene in rural Tanzania. Tropical medicine and international health, 19 (6). pp. 664-671.

Vetter, Beatrice N. and Orlowski, Vanessa and Fransen, Katrien and Niederhauser, Christoph and Aubert, Vincent and Brandenberger, Marcel and Ciardo, Diana and Dollenmaier, Günter and Klimkait, Thomas and Regenass, Stephan and Schmid, Patrick and Schottstedt, Volkmar and Suter-Riniker, Franziska and Yerly, Sabine and Shah, Cyril and Böni, Jürg and Schupbach, Jörg. (2014) Generation of a recombinant Gag virus-like-particle panel for the evaluation of p24 antigen detection by diagnostic HIV tests. PLoS ONE, 9 (10). e111552.

Kouyos, Roger D. and Rauch, Andri and Braun, Dominique L. and Yang, Wan-Lin and Böni, Jürg and Yerly, Sabine and Klimkait, Thomas and Aubert, Vincent and Shah, Cyril and Kovari, Helen and Calmy, Alexandra and Cavassini, Matthias and Battegay, Manuel and Vernazza, Pietro L. and Bernasconi, Enos and Ledergerber, Bruno and Günthard, Huldrych F. and Swiss H. I. V. Cohort Study, . (2014) Higher risk of incident hepatitis C virus coinfection among men who have sex with men, in whom the HIV genetic bottleneck at transmission was wide. Journal of Infectious Diseases, 210 (10). pp. 1555-1561.

Metzner, Karin J. and Scherrer, Alexandra U. and von Wyl, Viktor and Böni, Jürg and Yerly, Sabine and Klimkait, Thomas and Aubert, Vincent and Furrer, Hansjakob and Hirsch, Hans H. and Vernazza, Pietro L. and Cavassini, Matthias and Calmy, Alexandra and Bernasconi, Enos and Weber, Rainer and Günthard, Huldrych F. and Swiss H. I. V. Cohort Study, . (2014) Limited clinical benefit of minority K103N and Y181C-variant detection in addition to routine genotypic resistance testing in antiretroviral therapy-naive patients. AIDS, 28 (15). pp. 2231-2239.

Hasse, Barbara and Iff, Martin and Ledergerber, Bruno and Calmy, Alexandra and Schmid, Patrick and Hauser, Christoph and Cavassini, Matthias and Bernasconi, Enos and Marzolini, Catia and Tarr, Philip E. and Swiss HIV Cohort Study, and Aubert, Vincent and Barth, J. and Battegay, Manuel and Bernasconi, E. and Böni, Jürg and Bucher, Heiner C. and Burton-Jeangros, C. and Calmy, A. and Cavassini, M. and Egger, Matthias and Elzi, L. and Fehr, J. and Fellay, Jacques and Furrer, Hansjakob and Fux, Christoph A. and Gorgievski, M. and Günthard, H. and Haerry, D. and Hasse, B. and Hirsch, Hans H. and Hösli, Irene and Kahlert, C. and Kaiser, L. and Keiser, O. and Klimkait, Thomas and Kouyos, Roger D. and Kovari, Helen and Ledergerber, B. and Martinetti, G. and Martinez de Tejada, Begona and Metzner, K. and Müller, N. and Nadal, D. and Pantaleo, G. and Rauch, Andri and Regenass, Stephan and Rickenbach, Martin and Rudin, Christoph and Schöni-Affolter, F. and Schmid, P. and Schultze, D. and Schupbach, Jörg and Speck, R. and Staehelin, C. and Tarr, P. and Telenti, Amalio and Trkola, Alexandra and Vernazza, Pietro and Weber, R. and Yerly, S.. (2014) Obesity Trends and Body Mass Index Changes After Starting Antiretroviral Treatment: The Swiss HIV Cohort Study. Open Forum Infectious Diseases, 1 (2). ofu040.

Avila, Dorita and Keiser, Olivia and Egger, Matthias and Kouyos, Roger D. and Böni, Jürg and Yerly, Sabine and Klimkait, Thomas and Vernazza, Pietro L. and Aubert, Vincent and Rauch, Andri and Bonhoeffer, Sebastian and Günthard, Huldrych F. and Stadler, Tanja and Spycher, Ben D. and Swiss HIV Cohort Study, . (2014) Social meets molecular: Combining phylogenetic and latent class analyses to understand HIV-1 transmission in Switzerland. American Journal of Epidemiology, 179 (12). pp. 1514-1525.

Drescher, Sara M. and von Wyl, Viktor and Yang, Wan-Lin and Böni, Jürg and Yerly, Sabine and Shah, Cyril and Aubert, Vincent and Klimkait, Thomas and Taffé, Patrick and Furrer, Hansjakob and Battegay, Manuel and Ambrosioni, Juan and Cavassini, Matthias and Bernasconi, Enos and Vernazza, Pietro L. and Ledergerber, Bruno and Günthard, Huldrych F. and Kouyos, Roger D. and Swiss HIV Cohort Study, . (2014) Treatment-naive individuals are the major source of transmitted HIV-1 drug resistance in men who have sex with men in the Swiss HIV Cohort Study. Clinical Infectious Diseases, 58 (2). pp. 285-294.

2013

von Wyl, Viktor and Klimkait, Thomas and Yerly, Sabine and Nicca, Dunja and Furrer, Hansjakob and Cavassini, Matthias and Calmy, Alexandra and Bernasconi, Enos and Böni, Jürg and Aubert, Vincent and Günthard, Huldrych F. and Bucher, Heiner C. and Glass, Tracy R. and Swiss HIV Cohort Study, . (2013) Adherence as a predictor of the development of class-specific resistance mutations : the Swiss HIV cohort study. PLoS ONE, Vol. 8, H. 10 , e77691.

2012

Stadler, Tanja and Kouyos, Roger and von Wyl, Viktor and Yerly, Sabine and Böni, Jürg and Bürgisser, Philippe and Klimkait, Thomas and Joos, Beda and Rieder, Philip and Xie, Dong and Günthard, Huldrych F. and Drummond, Alexei J. and Bonhoeffer, Sebastian and Swiss HIV Cohort Study, . (2012) Estimating the basic reproductive number from viral sequence data. Molecular biology and evolution, 29 (1). pp. 347-357.

von Wyl, Viktor and Yerly, Sabine and Böni, Jürg and Shah, Cyril and Cellerai, Cristina and Klimkait, Thomas and Battegay, Manuel and Bernasconi, Enos and Cavassini, Matthias and Furrer, Hansjakob and Hirschel, Bernard and Vernazza, Pietro L. and Ledergerber, Bruno and Günthard, Huldrych F. and Swiss HIV Cohort Study, . (2012) Incidence of HIV-1 drug resistance among antiretroviral treatment-naive individuals starting modern therapy combinations. Clinical infectious diseases, Vol. 54, H. 1. pp. 131-140.

Klimkait, Thomas. (2012) The XTrack system: application and advantage. Intervirology, 55 (2). pp. 118-122.

2011

Daikeler, Thomas and Hoenger, Gideon and Oehri, Ineke and Tyndall, Alan and Gratwohl, Alois and Brander, Christian and Klimkait, Thomas and Gasser, Olivier and Hess, Christoph. (2011) Dominant Epstein-Barr virus-specific T-cell responses are maintained during moderate and intense immunosuppressive treatment. Annals of the rheumatic diseases, Vol. 70, H. 2. pp. 395-396.

Schüpbach, Jörg and Bisset, Leslie R. and Regenass, Stephan and Bürgisser, Philippe and Gorgievski, Meri and Steffen, Ingrid and Andreutti, Corinne and Martinetti, Gladys and Shah, Cyril and Yerly, Sabine and Klimkait, Thomas and Gebhardt, Martin and Schöni-Affolter, Franziska and Rickenbach, Martin and Swiss HIV Cohort Study, and Barth, J. and Battegay, M. and Bernascon, E. and Böni, J. and Bucher, H. C. and Bürgisser, P. and Burton-Jeangros, C. and Calmy, A. and Cavassini, M. and Dubs, R. and Egger, M. and Elzi, L. and Fehr, J. and Fischer, M. and Flepp, M. and Francioli, P. and Furrer, H. and Fux, C. A. and Gorgievski, M. and Günthard, H. and Hasse, B. and Hirsch, H. H. and Hirschel, B. and Hösli, I. and Kahlert, C. and Kaiser, L. and Keiser, O. and Kind, C. and Klimkait, T. and Kovari, H. and Ledergerber, B. and Martinetti, G. and Martinez de Tejada, B. and Müller, N. and Nadal, D. and Pantaleo, G. and Rauch, A. and Regenass, S. and Rickenbach, M. and Rudin, C. and Schmid, P. and Schultze, D. and Schöni-Affolter, F. and Schüpbach, J. and Speck, R. and Taffé, P. and Telenti, A. and Trkola, A. and Vernazza, P. and von Wyl, V. and Weber, R. and Yerly, S.. (2011) High specificity of line-immunoassay based algorithms for recent HIV-1 infection independent of viral subtype and stage of disease. BMC infectious diseases, Vol. 11 , 254. p. 254.

Scherrer, Alexandra U. and Ledergerber, Bruno and von Wyl, Viktor and Böni, Jürg and Yerly, Sabine and Klimkait, Thomas and Bürgisser, Philippe and Rauch, Andri and Hirschel, Bernard and Cavassini, Matthias and Elzi, Luigia and Vernazza, Pietro L. and Bernasconi, Enos and Held, Leonhard and Günthard, Huldrych F. and Swiss HIV Cohort Study, . (2011) Improved virological outcome in White patients infected with HIV-1 non-B subtypes compared to subtype B. Clinical infectious diseases, Vol. 53, H. 11. pp. 1143-1152.

Fehr, Jan and Glass, Tracey R. and Louvel, Séverine and Hamy, François and Hirsch, Hans H. and von Wyl, Viktor and Böni, Jürg and Yerly, Sabine and Bürgisser, Philippe and Cavassini, Matthias and Fux, Christoph A. and Hirschel, Bernard and Vernazza, Pietro and Martinetti, Gladys and Bernasconi, Enos and Günthard, Huldrych F. and Battegay, Manuel and Bucher, Heiner C. and Klimkait, Thomas and Swiss HIV Cohort Study, . (2011) Replicative phenotyping adds value to genotypic resistance testing in heavily pre-treated HIV-infected individuals - the Swiss HIV Cohort Study. Journal of translational medicine, 9. p. 14.

von Wyl, Viktor and Kouyos, Roger D. and Yerly, Sabine and Böni, Jürg and Shah, Cyril and Bürgisser, Philippe and Klimkait, Thomas and Weber, Rainer and Hirschel, Bernard and Cavassini, Matthias and Staehelin, Cornelia and Battegay, Manuel and Vernazza, Pietro L. and Bernasconi, Enos and Ledergerber, Bruno and Bonhoeffer, Sebastian and Günthard, Huldrych F. and Swiss HIV Cohort Study, . (2011) The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland. Journal of infectious diseases, Vol. 204, no. 7. pp. 1095-1103.

Miazga, Agnieszka and Hamy, François and Louvel, Séverine and Klimkait, Thomas and Pietrusiewicz, Zofia and Kurzy?ska-Kokorniak, Anna and Figlerowicz, Marek and Wi?ska, Patrycja and Kulikowski, Tadeusz. (2011) Thiated derivatives of 2',3'-dideoxy-3'-fluorothymidine : synthesis, in vitro anti-HIV-1 activity and interaction with recombinant drug resistant HIV-1 reverse transcriptase forms. Antiviral research, Vol. 92, H. 1. pp. 57-63.

2010

von Wyl, Viktor and Ehteshami, Maryam and Symons, Jori and Bürgisser, Philippe and Nijhuis, Monique and Demeter, Lisa M. and Yerly, Sabine and Böni, Jürg and Klimkait, Thomas and Schuurman, Rob and Ledergerber, Bruno and Götte, Matthias and Günthard Huldrych, F. and Swiss HIV Cohort Study, . (2010) Epidemiological and biological evidence for a compensatory effect of connection domain mutation N348I on M184V in HIV-1 reverse transcriptase. Journal of infectious diseases, Vol. 201, no. 7. pp. 1054-1062.

von Wyl, Viktor and Ehteshami, Maryam and Demeter, Lisa M. and Bürgisser, Philippe and Nijhuis, Monique and Symons, Jori and Yerly, Sabine and Böni, Jürg and Klimkait, Thomas and Schuurman, Rob and Ledergerber, Bruno and Götte, Matthias and Günthard Huldrych, F. and Swiss HIV Cohort Study, . (2010) HIV-1 reverse transcriptase connection domain mutations : dynamics of emergence and implications for success of combination antiretroviral therapy. Clinical infectious diseases, Vol. 51, H. 5. pp. 620-628.

Rieder, Philip and Joos, Beda and von Wyl, Viktor and Kuster, Herbert and Grube, Christina and Leemann, Christine and Böni, Jürg and Yerly, Sabine and Klimkait, Thomas and Bürgisser, Philipp and Weber, Rainer and Fischer, Marek and Günthard Huldrych, F. and Swiss HIV Cohort Study, . (2010) HIV-1 transmission after cessation of early antiretroviral therapy among men having sex with men. AIDS, Vol. 24, H. 8. pp. 1177-1183.

Scherrer, Alexandra U. and von Wyl, Viktor and Fux, Christof A. and Opravil, Milos and Bucher, Heiner C. and Fayet, Aurélie and Decosterd, Laurent A. and Hirschel, Bernhard and Khanlari, Bettina and Yerly, Sabine and Klimkait, Thomas and Furrer, Hansjakob and Ledergerber, Bruno and Günthard, Huldrych F.. (2010) Implementation of raltegravir in routine clinical practice : selection criteria for choosing this drug, virologic response rates, and characteristics of failures. JAIDS: journal of acquired immune deficiency syndromes, Vol. 53, H. 4. pp. 464-471.

Kouyos, Roger D. and von Wyl, Viktor and Yerly, Sabine and Böni, Jürg and Taffé, Patrick and Shah, Cyril and Bürgisser, Philippe and Klimkait, Thomas and Weber, Rainer and Hirschel, Bernard and Cavassini, Matthias and Furrer, Hansjakob and Battegay, Manuel and Vernazza, Pietro L. and Bernasconi, Enos and Rickenbach, Martin and Ledergerber, Bruno and Bonhoeffer, Sebastian and Günthard, Huldrych F.. (2010) Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. Journal of infectious diseases, Vol. 201, no. 10. pp. 1488-1497.

Opravil, Milos and Klimkait, Thomas and Louvel, Severine and Wolf, Eva and Battegay, Manuel and Fux, Christoph A. and Bernasconi, Enos and Vogel, Martin and Speck, Roberto and Weber, Rainer and Swiss HIV Cohort Study, . (2010) Prior therapy influences the efficacy of lamivudine monotherapy in patients with lamivudine-resistant HIV-1 infection. JAIDS: journal of acquired immune deficiency syndromes, Vol. 54, H. 1. pp. 51-58.

2009

Müller, Viktor and von Wyl, Viktor and Yerly, Sabine and Böni, Jürg and Klimkait, Thomas and Bürgisser, Philippe and Ledergerber, Bruno and Günthard, Huldrych F. and Bonhoeffer, Sebastian. (2009) African descent is associated with slower CD4 cell count decline in treatment-naive patients of the Swiss HIV Cohort Study. AIDS : official journal of the International AIDS Society, Vol. 23. pp. 1269-1276.

von Wyl, Viktor and Yerly, Sabine and Bürgisser, Philippe and Klimkait, Thomas and Battegay, Manuel and Bernasconi, Enos and Cavassini, Matthias and Furrer, Hansjakob and Hirschel, Bernard and Vernazza, Pietro L. and Francioli, Patrick and Bonhoeffer, Sebastian and Ledergerber, Bruno and Günthard Huldrych, F. and Swiss HIV Cohort Study, . (2009) Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, Vol. 48. pp. 979-987.