Items where Author is "Bonhoeffer, Sebastian"

Yes

Huisman, Jana S. and Scire, Jérémie and Angst, Daniel C. and Li, Jinzhou and Neher, Richard A. and Maathuis, Marloes H. and Bonhoeffer, Sebastian and Stadler, Tanja. (2022) Estimation and worldwide monitoring of the effective reproductive number of SARS-CoV-2. eLife, 11. p. 50.

Bakkeren, Erik and Herter, Joana Anuschka and Huisman, Jana Sanne and Steiger, Yves and Gül, Ersin and Newson, Joshua Patrick Mark and Brachmann, Alexander Oliver and Piel, Jörn and Regoes, Roland and Bonhoeffer, Sebastian and Diard, Médéric and Hardt, Wolf-Dietrich. (2021) Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut. eLife, 10. e69744.

Benz, Fabienne and Huisman, Jana S. and Bakkeren, Erik and Herter, Joana A. and Stadler, Tanja and Ackermann, Martin and Diard, Médéric and Egli, Adrian and Hall, Alex R. and Hardt, Wolf-Dietrich and Bonhoeffer, Sebastian. (2021) Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo. The ISME journal, 15 (3). pp. 862-878.

Bakkeren, Erik and Huisman, Jana S. and Fattinger, Stefan A. and Hausmann, Annika and Furter, Markus and Egli, Adrian and Slack, Emma and Sellin, Mikael E. and Bonhoeffer, Sebastian and Regoes, Roland R. and Diard, Médéric and Hardt, Wolf-Dietrich. (2019) Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut. Nature, 573 (7773). pp. 276-280.

Yang, Wan-Lin and Kouyos, Roger D. and Boni, Jürg and Yerly, Sabine and Klimkait, Thomas and Aubert, Vincent and Scherrer, Alexandra U. and Shilaih, Mohaned and Hinkley, Trevor and Petropoulos, Christos and Bonhoeffer, Sebastian and Gunthard, Huldrych F. and Swiss, H. I. V. Cohort Study. (2015) Persistence of transmitted HIV-1 drug resistance mutations associated with fitness costs and viral genetic backgrounds. PLoS Pathogens, 11 (3). e1004722.

Avila, Dorita and Keiser, Olivia and Egger, Matthias and Kouyos, Roger D. and Böni, Jürg and Yerly, Sabine and Klimkait, Thomas and Vernazza, Pietro L. and Aubert, Vincent and Rauch, Andri and Bonhoeffer, Sebastian and Günthard, Huldrych F. and Stadler, Tanja and Spycher, Ben D. and Swiss HIV Cohort Study, . (2014) Social meets molecular: Combining phylogenetic and latent class analyses to understand HIV-1 transmission in Switzerland. American Journal of Epidemiology, 179 (12). pp. 1514-1525.

Stadler, Tanja and Kouyos, Roger and von Wyl, Viktor and Yerly, Sabine and Böni, Jürg and Bürgisser, Philippe and Klimkait, Thomas and Joos, Beda and Rieder, Philip and Xie, Dong and Günthard, Huldrych F. and Drummond, Alexei J. and Bonhoeffer, Sebastian and Swiss HIV Cohort Study, . (2012) Estimating the basic reproductive number from viral sequence data. Molecular biology and evolution, 29 (1). pp. 347-357.

von Wyl, Viktor and Kouyos, Roger D. and Yerly, Sabine and Böni, Jürg and Shah, Cyril and Bürgisser, Philippe and Klimkait, Thomas and Weber, Rainer and Hirschel, Bernard and Cavassini, Matthias and Staehelin, Cornelia and Battegay, Manuel and Vernazza, Pietro L. and Bernasconi, Enos and Ledergerber, Bruno and Bonhoeffer, Sebastian and Günthard, Huldrych F. and Swiss HIV Cohort Study, . (2011) The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland. Journal of infectious diseases, Vol. 204, no. 7. pp. 1095-1103.

Kouyos, Roger D. and von Wyl, Viktor and Yerly, Sabine and Böni, Jürg and Taffé, Patrick and Shah, Cyril and Bürgisser, Philippe and Klimkait, Thomas and Weber, Rainer and Hirschel, Bernard and Cavassini, Matthias and Furrer, Hansjakob and Battegay, Manuel and Vernazza, Pietro L. and Bernasconi, Enos and Rickenbach, Martin and Ledergerber, Bruno and Bonhoeffer, Sebastian and Günthard, Huldrych F.. (2010) Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. Journal of infectious diseases, Vol. 201, no. 10. pp. 1488-1497.

Müller, Viktor and von Wyl, Viktor and Yerly, Sabine and Böni, Jürg and Klimkait, Thomas and Bürgisser, Philippe and Ledergerber, Bruno and Günthard, Huldrych F. and Bonhoeffer, Sebastian. (2009) African descent is associated with slower CD4 cell count decline in treatment-naive patients of the Swiss HIV Cohort Study. AIDS : official journal of the International AIDS Society, Vol. 23. pp. 1269-1276.

von Wyl, Viktor and Yerly, Sabine and Bürgisser, Philippe and Klimkait, Thomas and Battegay, Manuel and Bernasconi, Enos and Cavassini, Matthias and Furrer, Hansjakob and Hirschel, Bernard and Vernazza, Pietro L. and Francioli, Patrick and Bonhoeffer, Sebastian and Ledergerber, Bruno and Günthard Huldrych, F. and Swiss HIV Cohort Study, . (2009) Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, Vol. 48. pp. 979-987.