Items where Author is "Ahrné, Erik"

2019

Opitz, Christian and Ahrné, Erik and Goldie, Kenneth N. and Schmidt, Alexander and Grzesiek, Stephan. (2019) Deuterium induces a distinctive Escherichia coli proteome that correlates with the reduction in growth rate. Journal of Biological Chemistry, 294 (7). pp. 2279-2292.

Dreier, Roland Felix and Ahrné, Erik and Broz, Petr and Schmidt, Alexander. (2019) Global Ion Suppression Limits the Potential of Mass Spectrometry Based Phosphoproteomics. Journal of proteome research, 18 (1). pp. 493-507.

January 2016

Schmidt, Alexander and Kochanowski, Karl and Vedelaar, Silke and Ahrné, Erik and Volkmer, Benjamin and Callipo, Luciano and Knoops, Kèvin and Bauer, Manuel and Aebersold, Ruedi and Heinemann, Matthias. (2016) The quantitative and condition-dependent Escherichia coli proteome. Nature biotechnology, 34 (1). pp. 104-110.

2016

Ahrné, Erik and Glatter, Timo and Viganò, Cristina and Schubert, Conrad von and Nigg, Erich A. and Schmidt, Alexander. (2016) Evaluation and Improvement of Quantification Accuracy in Isobaric Mass Tag-Based Protein Quantification Experiments. Journal of Proteome Research, 15 (8). pp. 2537-2547.

November 2015

Glatter, Timo and Ahrné, Erik and Schmidt, Alexander. (2015) Comparison of Different Sample Preparation Protocols Reveals Lysis Buffer-Specific Extraction Biases in Gram-Negative Bacteria and Human Cells. Journal of Proteome Research, 14 (11). pp. 4472-4485.

1 September 2015

Ahrné, Erik and Martinez-Segura, Amalia and Syed, Afzal Pasha and Vina-Vilaseca, Arnau and Gruber, Andreas J. and Marguerat, Samuel and Schmidt, Alexander. (2015) Exploiting the multiplexing capabilities of tandem mass tags for high-throughput estimation of cellular protein abundances by mass spectrometry. Methods, 85. pp. 100-107.

2015

Bauer, Manuel and Ahrné, Erik and Baron, Anna P. and Glatter, Timo and Fava, Luca L. and Santamaria, Anna and Nigg, Erich A. and Schmidt, Alexander. (2015) Assessment of current mass spectrometric workflows for the quantification of low abundant proteins and phosphorylation sites. Data in brief, 5. pp. 297-304.

Laventie, Benoît-Joseph and Nesper, Jutta and Ahrné, Erik and Glatter, Timo and Schmidt, Alexander and Jenal, Urs. (2015) Capture compound mass spectrometry - a powerful tool to identify novel c-di-GMP effector proteins. Journal of visualized experiments, H. 97 , e51404.

Schreiner, Dietmar and Simicevic, Jovan and Ahrné, Erik and Schmidt, Alexander and Scheiffele, Peter. (2015) Quantitative isoform-profiling of highly diversified recognition molecules. eLife, Vol. 4. pp. 1-17.

2014

Bauer, Manuel and Ahrné, Erik and Baron, Anna P. and Glatter, Timo and Fava, Luca L. and Santamaria, Anna and Nigg, Erich A. and Schmidt, Alexander. (2014) Evaluation of data-dependent and -independent mass spectrometric workflows for sensitive quantification of proteins and phosphorylation sites. Journal of proteome research, Vol. 13, H. 12. pp. 5973-5988.

Schreiner, Dietmar and Nguyen, Thi-Minh and Russo, Giancarlo and Heber, Steffen and Patrignani, Andrea and Ahrné, Erik and Scheiffele, Peter. (2014) Targeted combinatorial alternative splicing generates brain region-specific repertoires of neurexins. Neuron, Vol. 84, H. 2 , S. 386–398.

2013

Ahrné, Erik and Molzahn, Lars and Glatter, Timo and Schmidt, Alexander. (2013) Critical assessment of proteome-wide label-free absolute abundance estimation strategies. Proteomics, Vol. 13, H. 17. pp. 2567-2578.

Gunaratne, Jayantha and Schmidt, Alexander and Quandt, Andreas and Neo, Suat Peng and Saraç, Omer Sinan and Gracia, Tannia and Loguercio, Salvatore and Ahrné, Erik and Xia, Rachel Li Hai and Tan, Keng Hwa and Lössner, Christopher and Bähler, Jürg and Beyer, Andreas and Blackstock, Walter and Aebersold, Ruedi. (2013) Extensive mass spectrometry-based analysis of the fission yeast proteome : the Schizosaccharomyces pombe Peptide Atlas. Molecular & cellular proteomics, Vol. 12, H. 6. pp. 1741-1751.

2012

Glatter, Timo and Ludwig, Christina and Ahrné, Erik and Aebersold, Ruedi and Heck, Albert J. R. and Schmidt, Alexander. (2012) Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion. Journal of proteome research, Vol. 11, H. 11. pp. 5145-5156.