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Items where contributor is "Durairaj, Janani"

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2023

Durairaj, Janani and Waterhouse, Andrew M. and Mets, Toomas and Brodiazhenko, Tetiana and Abdullah, Minhal and Studer, Gabriel and Akdel, Mehmet and Andreeva, Antonina and Bateman, Alex and Tenson, Tanel and Hauryliuk, Vasili and Schwede, Torsten and Pereira, Joana. (2023) What is hidden in the darkness? Deep-learning assisted large-scale protein family curation uncovers novel protein families and folds.

Alexander, Leila T. and Durairaj, Janani and Kryshtafovych, Andriy and Abriata, Luciano A. and Bayo, Yusupha and Bhabha, Gira and Breyton, Cécile and Caulton, Simon G. and Chen, James and Degroux, Séraphine and Ekiert, Damian C. and Erlandsen, Benedikte S. and Freddolino, Peter L. and Gilzer, Dominic and Greening, Chris and Grimes, Jonathan M. and Grinter, Rhys and Gurusaran, Manickam and Hartmann, Marcus D. and Hitchman, Charlie J. and Keown, Jeremy R. and Kropp, Ashleigh and Kursula, Petri and Lovering, Andrew L. and Lemaitre, Bruno and Lia, Andrea and Liu, Shiheng and Logotheti, Maria and Lu, Shuze and Markússon, Sigurbjörn and Miller, Mitchell D. and Minasov, George and Niemann, Hartmut H. and Opazo, Felipe and Phillips, George N. and Davies, Owen R. and Rommelaere, Samuel and Rosas-Lemus, Monica and Roversi, Pietro and Satchell, Karla and Smith, Nathan and Wilson, Mark A. and Wu, Kuan-Lin and Xia, Xian and Xiao, Han and Zhang, Wenhua and Zhou, Z. Hong and Fidelis, Krzysztof and Topf, Maya and Moult, John and Schwede, Torsten. (2023) Protein target highlights in CASP15: Analysis of models by structure providers. Proteins: Structure, Function, and Bioinformatics . Online ahead of print..

Durairaj, Janani and Waterhouse, Andrew M. and Mets, Toomas and Brodiazhenko, Tetiana and Abdullah, Minhal and Studer, Gabriel and Tauriello, Gerardo and Akdel, Mehmet and Andreeva, Antonina and Bateman, Alex and Tenson, Tanel and Hauryliuk, Vasili and Schwede, Torsten and Pereira, Joana. (2023) Uncovering new families and folds in the natural protein universe. Nature, 622 (7983). pp. 646-653.

2022

Pantolini, Lorenzo and Studer, Gabriel and Pereira, Joana and Durairaj, Janani and Schwede, Torsten . (2022) Embedding-based alignment: combining protein language models and alignment approaches to detect structural similarities in the twilight-zone.

Durairaj, Janani and Pereira, Joana and Akdel, Mehmet and Schwede, Torsten. (2022) What is hidden in the darkness? Characterization of AlphaFold structural space.

Akdel, Mehmet and Pires, Douglas E. V. and Pardo, Eduard Porta and Jänes, Jürgen and Zalevsky, Arthur O. and Mészáros, Bálint and Bryant, Patrick and Good, Lydia L. and Laskowski, Roman A. and Pozzati, Gabriele and Shenoy, Aditi and Zhu, Wensi and Kundrotas, Petras and Serra, Victoria Ruiz and Rodrigues, Carlos H. M. and Dunham, Alistair S. and Burke, David and Borkakoti, Neera and Velankar, Sameer and Frost, Adam and Basquin, Jérôme and Lindorff-Larsen, Kresten and Bateman, Alex and Kajava, Andrey V. and Valencia, Alfonso and Ovchinnikov, Sergey and Durairaj, Janani and Ascher, David B. and Thornton, Janet M. and Davey, Norman E. and Stein, Amelie and Elofsson, Arne and Croll, Tristan I. and Beltrao, Pedro. (2022) A structural biology community assessment of AlphaFold2 applications. Nature Structural and Molecular Biology, 29 (11). pp. 1056-1067.