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Doctoral Thesis

Schmidt, Ralf. To what end? - Computational tools to uncover regulators of pre-mRNA polyadenylation site selection. 2018, Doctoral Thesis, University of Basel, Faculty of Science.

Gypas, Foivos. Computational methods for the identification and quantification of transcript isoforms from next generation sequencing data. 2018, Doctoral Thesis, University of Basel, Faculty of Science.

Zmajkovic, Jakub. Genetic studies of hereditary myeloproliferative disorders. 2018, Doctoral Thesis, University of Basel, Faculty of Science.

Brancati, Giovanna. Molecular determinants of miRNA target specificity and tissue-specific studies in C. elegans. 2017, Doctoral Thesis, University of Basel, Faculty of Science.

Jaquet, Vincent. Characterization of bistability and transition rates in transcriptional positive feedback loops. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Jedlinski, Dominik Jan. Deciphering the landscape of snoRNA-mediated RNA modifications with high-throughput sequencing approaches. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Aeschimann, Florian. The mRNA silencing dual activity of the RNA-binding protein LIN41 and the role of its targets in C. elegans development. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Gumienny, Rafał Wojciech. Identification of small non-coding RNA targets using computational predictions and high throughput sequencing data. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Rausch, Magdalene. Differential roles of the microRNA let-7 in C. elegans tissue development. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Richter, Hannes. Functional and structural analysis of the C. elegans PAXT-1-XRN2 complex. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Kowalik, Katarzyna Maria. The RNA Polymerase II-associated factor 1 complex represses small-RNA-mediated heterochromatin formation and gene silencing. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Syed, Afzal Pasha. Role of post- transcriptional regulators in the establishment and maintenance of cell identity. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Dimitrova, Yoana. Robustness and plasticity of epithelial cell state in development and malignancy. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Gruber, Andreas J.. Computational analysis of transcriptional and post-transcriptional regulation of gene expression. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Hendriks, Gerardus Johannes. Extensive oscillatory gene expression during "C. elegans" larval development. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Bilen, Biter. Development of methods for the analysis of deep sequencing data; applications to the discovery of functions of RNA-binding proteins. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Jorjani, Hadi. Computational analysis of next generation sequencing data : from transcription start sites in bacteria to human non-coding RNAS. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Seguin, Jonathan. Next generation sequencing for studying viruses and RNA silencing-based antiviral defense in crop plants. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Mathys, Hansruedi. The role of GW182 proteins in microRNA-mediated gene silencing. 2013, Doctoral Thesis, University of Basel, Faculty of Science.

Mohsen, Khorshid. Characterization of post-transcriptional regulatory network of RNA-binding proteins using computational predictions and deep sequencing data. 2013, Doctoral Thesis, University of Basel, Faculty of Science.

Hurschler, Benjamin. The type II poly(A)-binding protein PABP-2 is a downstream target of the "let-7" microRNA in the heterochronic pathway of "Caenorhabditis elegans" : mechanisms of microRNA-mediated gene silencing in "Caenorhabditis elegans". 2012, Doctoral Thesis, University of Basel, Faculty of Science.

Berninger, Philipp Friedrich. Computational methods for analyzing small RNAs and their interaction partners with large-scale techniques. 2011, Doctoral Thesis, University of Basel, Faculty of Science.

Hausser, Jean Albert René. Regulation of gene expression by micrornas : targeting specificity, kinetics and function. 2011, Doctoral Thesis, University of Basel, Faculty of Science.

Burger, Lukas Johannes. Inference of biomolecular interactions from sequence data. 2010, Doctoral Thesis, University of Basel, Faculty of Science.

Molina, Nacho. Genome evolution and regulatory network structure in bacteria. 2010, Doctoral Thesis, University of Basel, Faculty of Science.

Chern, Tzu-Ming. A trio of unique alternative splicing patterns : the splicing of tandem NAGNAG acceptors, transcription-start-site-dependent and mutually dependent cassette exons. 2008, Doctoral Thesis, University of Basel, Faculty of Science.

Sinkkonen, Lasse. MicroRNAs regulate "de novo" DNA methylation and histone mRNA 3' end formation in mammalian cells. 2008, Doctoral Thesis, University of Basel, Faculty of Science.

Harrington, Eoghan. Understanding the functionality of transcript diversity. 2007, Doctoral Thesis, University of Basel, Faculty of Science.

Gaidatzis, Dimosthenis. Computational discovery of animal small RNA genes and targets. 2007, Doctoral Thesis, University of Basel, Faculty of Science.