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Browse by Basel Advisors

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2017

Studer, Gabriel. Efficient algorithms in protein modelling. 2017, Doctoral Thesis, University of Basel, Faculty of Science.

2016

Romano, Valentina. Computational engineering of co-substrate specificity in protein kinases. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Bignucolo, Olivier Daniel. From peptides to transmembrane proteins : helix versus kink formations in highly dynamical systems. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Bertoni, Martino. Modeling homo- and hetero-oligomers using in silico prediction of protein quaternary structure. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Heer, Florian. Molecular mechanics investigation of conductance regulation in selective K+ ion channels. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

2015

Uda, Narasimha Rao. Promiscuous behaviour of the bacterial metallohydrolase DapE : an evolutionary and mechanistic perspective. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

2014

Baday, Sefer. Computational investigation of function of membrane proteins : Amt/Rh Ammonium transporters and SecY translocon. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Xu, Yanyan. Molecular mechanics investigation of the transport mechanisms in the CIC-ec1 H+/CI⁻ exchanger and P-glycoprotein/Sav1866 ABC transporter. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Cassarino, Tiziano Gallo. Modelling cofactors in comparative protein structure models by evolutionary inference. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Wojtas-Niziurski, Wojciech. Study of molecular processes through calculation of multidimensional free energy landscapes. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

2013

Biasini, Marco. Accurate modeling of protein structures by homology. 2013, Doctoral Thesis, University of Basel, Faculty of Science.

Schmidt, Tobias Benjamin. Computational approaches for investigating protein-ligand interactions - towards an in-depth understanding of the dengue virus methyltransferase. 2013, Doctoral Thesis, University of Basel, Faculty of Science.

2012

Kiefer, Florian. Modeling of tertiary and quaternary protein structures by homology. 2012, Doctoral Thesis, University of Basel, Faculty of Science.

2010

Roy, Shantanu. A global optimization approach for searching low energy conformations of proteins. 2010, Doctoral Thesis, University of Basel, Faculty of Science.

Thorsteinsdottir, Holmfridur B.. Computational analysis of protein-ligand binding : from single continuous trajectories to multiple parallel simulations. 2010, Doctoral Thesis, University of Basel, Faculty of Science.

2009

Battey, James Nicolas Duncan. Modelling the effects of single point mutations on the structure and function of proteins. 2009, Doctoral Thesis, University of Basel, Faculty of Science.

Tomovic, Andrija. Computational analysis of promoters and DNA-protein interactions. 2009, Doctoral Thesis, University of Basel, Faculty of Science.

2008

Gerebtzoff, Grégori. "In silico" prediction of blood-brain barrier permeation and P-glycoprotein activity. 2008, Doctoral Thesis, University of Basel, Faculty of Science.

Chern, Tzu-Ming. A trio of unique alternative splicing patterns : the splicing of tandem NAGNAG acceptors, transcription-start-site-dependent and mutually dependent cassette exons. 2008, Doctoral Thesis, University of Basel, Faculty of Science.

2005

Monigatti, Flavio. Algorithms for the analysis of MALDI peptide mass fingerprint spectra for proteomics. 2005, Doctoral Thesis, University of Basel, Faculty of Science.