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From supramolecular vanadate receptors to enzyme models of vanadium Haloperoxidase

Zhang, Xiao-an. From supramolecular vanadate receptors to enzyme models of vanadium Haloperoxidase. 2005, Doctoral Thesis, University of Basel, Faculty of Science.

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Official URL: http://edoc.unibas.ch/diss/DissB_7123

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Abstract

V-HPOs are enzymes catalyzing the halogenation of a variety of organic substrates using hydrogen peroxide and halide ions at slightly acidic condition[1-3]. The X-ray structure of V-HPO from Curvularia inaequalis[4, 5] reveals that the positively charged residues at the active site bind orthovanadate (HVO42-) through electrostatic interaction and hydrogen bonds, together with one coordinating bond from the nitrogen (N 2) of His496 to vanadium, which is the only direct bond from protein to metal center. Accordingly the coordination sphere at vanadium is trigonalbipyramidal, resembling the transition state of SN2-type reactions involving phosphates[6]. Apart from that, vanadate and phosphate are also very similar in the tetrahedral ground state. Thus, it is no surprise that vanadate is an inhibitor of various phosphate metabolizing enzymes[7]. Since the structural assignment and reaction mechanism of V-HPOs are still under debate, and no structural model reported so far shows high fidelity concerning the non-covalent binding fashion, we decided to prepare supramolecular models structurally related to the binding mode of HVO42- in the enzyme, and study the influence of the binding sphere of vanadate to its catalytic activity. The vanadate receptor tris-(2-guanidinium-ethyl)aminewas rationally designed and conveniently synthesized from tris-(2-aminoethyl)amine via single step. Its three guanidinium-arms can provide not only positive charges but also several hydrogen bond donor sites. The central nitrogen with pKa=2.48 for its conjugated acid, allows the V-N coordination to occur within a broad pH window. The X-ray structure ofreveals that it is already preorganized in a basket shape before binding vanadate, which verifies our design. NMR titration data from 51V of vanadate and 1H of the ligand give complementary
results. The ligand 1 binds vanadate as 1/1 complex 5 (Scheme 19) at pH 10.21 in
water solution, with Ka = 103 Mol-1. The complex 5 was also detected by ESI-MS.
The absorption at 306 nm observed in UV difference spectrum is an indication of a VN
bond formation in agreement with coordination in V-HPO. The time dependent
DFT calculation both for enzyme and model system 5 provided in-depth evidence that
V-N coordination is responsible for this UV band.
5 is the first supramolecular structural model V-HPO. These model studies provided
for the first time evidence that the V-N bond of V-HPO is coordinative and not
covalent as original proposed[8].
A series of more rigid novel guanidinium-cryptands containing the key scaffold of 1
were synthesized (Scheme 20), the preorganization was expected to provide higher
affinity to vanadate. A general flexible synthetic strategy was developed which allows
the preparation of the guanidinium cryptands with different size and geometry.
However, spectroscopic studies failed to demonstrate any enhancement of binding
constant for encapsulating vanadate. The association of vanadate most likely occurres
not interior but outside of the cavity even for the largest cage receptor 35. Three pyrene moieties introduced to the terminal-N atoms of 1 not only improved the
solubility of the receptor in unpolar solvent, but also served as UV and fluorescence
sensor for vanadate recognition (see Scheme 21). In addition, the - stacking
interaction within pyrenes holds three arms together to further preorganize itself
favoring the binding of vanadate. This preorganization was demonstrated by
observing the pyrene excimer emission, which can be also observed for the neutral
analogue 53. The binding of vanadate to 36 and 53 is coupled with the significant UV and
fluorescence response in acetonitrile. Upon the addition of vanadate, the UV bands of
36 became broader and red shifted, together with a PET-type fluorescence quenching.
Therefore, deduced from the UV, fluorescence titration and additional 51V-NMR data,
36 exhibits an association constant >> 3 × 107 mol-1 with pyrovanadate (V2O7
4-, V2)
(Scheme 22) in acetonitrile, which is at least 4 times magnitude higher than that of 1 to vanadate (HVO4
2-, V1). The preference of 36 to bind V2 over V1 was also
confirmed in titration studies with the pyrophosphate and phosphate, the structure
analogue of V2 and V1 respectively. The neutral thiourea receptor 53 shows much lower binding constant and almost no
preference to any vanadate or phosphate species mentioned above, revealing the
importance of positive charge on the affinity and selectivity for anion binding.
Kinetic studies reveal that simple vanadate in acetonitrile is a more efficient
functional model than in water. The rate acceleration in acetonitrile is thought to be
originated from an enzyme-like hydrophobic environment for the catalytic species.
UV and fluorescence titration shows that the supramolecular receptor 36 exhibits high
affinity to the peroxovanadate as well, which verifies that vanadium core keeps being
bounded in the catalytical cycle. A competitive catalytic bromination experiment was
designed and successfully demonstrated the kinetic process for the catalytic
bromination of 1,3,5-tri-methoxy-benzene (TMB) and monochlorodimedone (MCD)
mixture substrates. The addition of 36 to the reaction system significantly enhances
the catalytic efficiency. The rate enhancement by 36 may be reasoned to the
increasing of Lewis acidity of vanadate by forming hydrogen bonds with positively
charged guanidiniums of 36. In addition, the central nitrogen atom of 36 may act as an
acid base catalyst, facilitating the protonation of peroxovanadate. All together, 36 is
an effective functional model for V-HPO based on the structural fidelity to the
supramolecular binding fashion of the enzyme.
Advisors:Woggon, Wolf-Dietrich
Committee Members:Pfaltz, Andreas and Constable, Edwin C.
Faculties and Departments:05 Faculty of Science > Departement Chemie > Former Organization Units Chemistry > Physikalische Chemie (Maier)
UniBasel Contributors:Zhang, Xiaoyan and Woggon, Wolf-Dietrich and Pfaltz, Andreas
Item Type:Thesis
Thesis Subtype:Doctoral Thesis
Thesis no:7123
Thesis status:Complete
Bibsysno:Link to catalogue
Number of Pages:135
Language:English
Identification Number:
Last Modified:05 Apr 2018 17:31
Deposited On:13 Feb 2009 15:05

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