SWISS-TANDEM : a Web-based workspace for MS/MS protein identification on PC grid

Zosso, D. and Arnold, K. and Schwede, T. and Podvinec, M.. (2007) SWISS-TANDEM : a Web-based workspace for MS/MS protein identification on PC grid. In: Twentieth IEEE international symposium on computer-based medical systems, CBMS 2007. Los Alamitos, Calif., pp. 406-411.

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Official URL: http://edoc.unibas.ch/dok/A5259299

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Tandem mass spectrometry is a powerful technique for the identification of proteins contained in a biological sample. We present a grid-based application service for the analysis of tandem mass spectra, based on the open-source X!Tandem algorithm. The implemented parallelization strategy allows the distribution of analysis jobs to a grid of desktop PCs, utilizing their idle capacity. For this application service, a user-friendly project-oriented front-end was developed, implemented as a web-based workspace. After analysis, results are visualized and presented to the user along with a set of powerful and novel tools to allow further interpretation and evaluation of search results.
Faculties and Departments:05 Faculty of Science > Departement Biozentrum > Computational & Systems Biology > Bioinformatics (Schwede)
05 Faculty of Science > Departement Biozentrum > Services Biozentrum > Research IT (Podvinec)
UniBasel Contributors:Podvinec, Michael and Schwede, Torsten
Item Type:Conference or Workshop Item
Conference or workshop item Subtype:Conference Paper
Publisher:IEEE Computer Society
Note:Note: Kongressort: Maribor, 20.-22. Juni 2007 -- Publication type according to Uni Basel Research Database: Conference paper
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Last Modified:14 Sep 2012 06:49
Deposited On:22 Mar 2012 13:59

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