Items where Division is "05 Faculty of Science > Departement Biozentrum > Computational & Systems Biology > Synthetic Microbiology (Becskei)"

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Baudrimont, Antoine and Voegeli, Sylvia and Viloria, Eduardo Calero and Stritt, Fabian and Lenon, Marine and Wada, Takeo and Jaquet, Vincent and Becskei, Attila. (2017) Multiplexed gene control reveals rapid mRNA turnover. Science Advances, 3 (7). e1700006.

Gencoglu, Mumun and Schmidt, Alexander and Becskei, Attila. (2017) Measurement of in vivo protein binding affinities in a signaling network with mass spectrometry. ACS Synthetic Biology, 6 (7). pp. 1305-1314.

Jaquet, Vincent and Hsu, Chieh and Becskei, Attila. (2017) Measurement of bistability in a multidimensional parameter space. Integrative Biology, 9 (2). 167-177 .

Maleki, Farzaneh and Becskei, Attila. (2017) An open-loop approach to calculate noise-induced transitions. Journal of Theoretical Biology. pp. 1-13.

Wada, Takeo and Becskei, Attila. (2017) Impact of Methods on the Measurement of mRNA Turnover. International Journal of Molecular Sciences, 18 (12). p. 12.

9 October 2016

Hsu, Chieh and Jaquet, Vincent and Maleki, Farzaneh and Becskei, Attila. (2016) Contribution of bistability and noise to cell fate transitions determined by feedback opening. Journal of Molecular Biology, 428 (20). pp. 4115-4128.


Hsu, Chieh and Jaquet, Vincent and Gencoglu, Mumun and Becskei, Attila. (2016) Protein Dimerization Generates Bistability in Positive Feedback Loops. Cell Reports , 16 (5). pp. 1204-1210.

Jaquet, Vincent. Characterization of bistability and transition rates in transcriptional positive feedback loops. 2016, PhD Thesis, University of Basel, Faculty of Science.

Maleki, Farzaneh. An open-loop approach to study the stochastic properties. 2016, PhD Thesis, University of Basel, Faculty of Science.

December 2015

Májer, Imre and Hajihosseini, Amirhossein and Becskei, Attila. (2015) Identification of optimal parameter combinations for the emergence of bistability. Physical biology, 12 (6). 066011.

5 November 2015

Baudrimont, Antoine and Becskei, Attila. (2015) Gene regulation: Expression feels two pulses. Nature, 527 (7576). pp. 46-47.


Gençoğlu, Mümün. Quantification of macromolecular interactions in GAL network. 2015, PhD Thesis, University of Basel, Faculty of Science.

Hajihosseini, Amirhossein. Exploring robustness of bistability in prototypical positive feedback loops. 2015, PhD Thesis, University of Basel, Faculty of Science.


Bonde, Marie Mi and Voegeli, Sylvia and Baudrimont, Antoine and Séraphin, Bertrand and Becskei, Attila. (2014) Quantification of pre-mRNA escape rate and synergy in splicing. Nucleic acids research, Vol. 42, H. 20. S. 12847-12860.


Stölting, Meline Nogueira Lucena and Ferrari, Stefano and Handschin, Christoph and Becskei, Attila and Provenzano, Maurizio and Sulser, Tullio and Eberli, Daniel. (2013) Myoblasts inhibit prostate cancer growth by paracrine secretion of tumor necrosis factor-α. Journal of Urology, 189 (5). pp. 1952-1959.


Hsu, Chieh and Scherrer, Simone and Buetti-Dinh, Antoine and Ratna, Prasuna and Pizzolato, Julia and Jaquet, Vincent and Becskei, Attila. (2012) Stochastic signalling rewires the interaction map of a multiple feedback network during yeast evolution. Nature communications, Vol. 3 , 682.


Becskei, Attila and Scherrer, Simone and Kelemen, Janos Z. and Murray, Ann Ehrenhofer. (2011) Modeling of chromosomal epigenetic silencing processes. Transcription, 2 (4). pp. 173-178.

Ratna, Prasuna and Becskei, Attila. (2011) Construction of cis-regulatory input functions of yeast promoters. Methods in Molecular Biology, 734. pp. 45-61.


Kelemen, János Z. and Ratna, Prasuna and Scherrer, Simone and Becskei, Attila. (2010) Spatial epigenetic control of mono- and bistable gene expression. PLoS Biology, 8 (3). e1000332.

Sun, Li and Becskei, Attila. (2010) Systems biology: The cost of feedback control. Nature, 467 (7312). pp. 163-164.


Becskei, Attila. (2009) Linearization through distortion: a new facet of negative feedback in signalling. Molecular Systems Biology, 5. p. 255.

Buetti-Dinh, Antoine and Ungricht, Rosemarie and Kelemen, János Z. and Shetty, Chetak and Ratna, Prasuna and Becskei, Attila. (2009) Control and signal processing by transcriptional interference. Molecular Systems Biology, 5. p. 300.

Byun, Reine and Becskei, Attila. (2009) Biology inspires engineering. Genome Biology, 10 (11). p. 317.

Ratna, Prasuna and Scherrer, Simone and Fleischli, Christoph and Becskei, Attila. (2009) Synergy of repression and silencing gradients along the chromosome. Journal of Molecular Biology, 387 (4). pp. 826-839.


Becskei, Attila and Grusby, Michael J.. (2007) Contribution of IL-12R mediated feedback loop to Th1 cell differentiation. FEBS Letters, 581 (27). pp. 5199-5206.


Acar, Murat and Becskei, Attila and van Oudenaarden, Alexander. (2005) Enhancement of cellular memory by reducing stochastic transitions. Nature, 435 (7039). pp. 228-232.

Becskei, Attila and Kaufmann, Benjamin B. and van Oudenaarden, Alexander. (2005) Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nature Genetics, 37 (9). pp. 937-944.

Becskei, Attila and Mattaj, Iain W.. (2005) Quantitative models of nuclear transport. Current Opinion in Cell Biology, 17 (1). pp. 27-34.

Ozbudak, Ertugrul M. and Becskei, Attila and van Oudenaarden, Alexander. (2005) A system of counteracting feedback loops regulates Cdc42p activity during spontaneous cell polarization. Developmental Cell, 9 (4). pp. 565-571.


Becskei, Attila and Boselli, Monica G. and van Oudenaarden, Alexander. (2004) Amplitude control of cell-cycle waves by nuclear import. Nature Cell Biology , 6 (5). pp. 451-457.


Becskei, Attila and Mattaj, Iain W.. (2003) The strategy for coupling the RanGTP gradient to nuclear protein export. Proceedings of the National Academy of Sciences of the United States of America, 100 (4). pp. 1717-1722.


Louis, Matthieu and Becskei, Attila. (2002) Binary and graded responses in gene networks. Science Signaling, 2002 (143). e33.


Becskei, A. and Séraphin, B. and Serrano, L.. (2001) Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. The EMBO Journal, 20 (10). pp. 2528-2535.


Becskei, A. and Serrano, L.. (2000) Engineering stability in gene networks by autoregulation. Nature, 405 (6786). pp. 590-593.


Jancsó, G. and Domoki, F. and Sántha, P. and Varga, J. and Fischer, J. and Orosz, K. and Penke, B. and Becskei, Attila and Dux, M. and Tóth, L.. (1998) Beta-amyloid (1-42) peptide impairs blood-brain barrier function after intracarotid infusion in rats. Neuroscience Letters, 253 (2). pp. 139-141.

This list was generated on Sun Mar 25 03:58:34 2018 CEST.