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Items where Division is "05 Faculty of Science > Departement Biozentrum > Computational & Systems Biology > Synthetic Microbiology (Becskei)"

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Number of items at this level: 44.

A

Acar, Murat and Becskei, Attila and van Oudenaarden, Alexander. (2005) Enhancement of cellular memory by reducing stochastic transitions. Nature, 435 (7039). pp. 228-232.

B

Becskei, Attila and Rahaman, Sayanur. (2022) The life and death of RNA across temperatures. Computational and structural biotechnology journal, 20. pp. 4325-4336.

Becskei, Attila. (2020) Tuning up Transcription Factors for Therapy. Molecules, 25 (8). p. 1902.

Baudrimont, Antoine and Jaquet, Vincent and Wallerich, Sandrine and Voegeli, Sylvia and Becskei, Attila. (2019) Contribution of RNA Degradation to Intrinsic and Extrinsic Noise in Gene Expression. Cell reports, 26 (13). pp. 3752-3761.e5.

Baudrimont, Antoine and Voegeli, Sylvia and Viloria, Eduardo Calero and Stritt, Fabian and Lenon, Marine and Wada, Takeo and Jaquet, Vincent and Becskei, Attila. (2017) Multiplexed gene control reveals rapid mRNA turnover. Science Advances, 3 (7). e1700006.

Baudrimont, Antoine and Becskei, Attila. (2015) Gene regulation: Expression feels two pulses. Nature, 527 (7576). pp. 46-47.

Bonde, Marie Mi and Voegeli, Sylvia and Baudrimont, Antoine and Séraphin, Bertrand and Becskei, Attila. (2014) Quantification of pre-mRNA escape rate and synergy in splicing. Nucleic acids research, Vol. 42, H. 20. pp. 12847-12860.

Becskei, Attila and Scherrer, Simone and Kelemen, Janos Z. and Murray, Ann Ehrenhofer. (2011) Modeling of chromosomal epigenetic silencing processes. Transcription, 2 (4). pp. 173-178.

Becskei, Attila. (2009) Linearization through distortion: a new facet of negative feedback in signalling. Molecular Systems Biology, 5. p. 255.

Buetti-Dinh, Antoine and Ungricht, Rosemarie and Kelemen, János Z. and Shetty, Chetak and Ratna, Prasuna and Becskei, Attila. (2009) Control and signal processing by transcriptional interference. Molecular Systems Biology, 5. p. 300.

Byun, Reine and Becskei, Attila. (2009) Biology inspires engineering. Genome Biology, 10 (11). p. 317.

Becskei, Attila and Grusby, Michael J.. (2007) Contribution of IL-12R mediated feedback loop to Th1 cell differentiation. FEBS Letters, 581 (27). pp. 5199-5206.

Becskei, Attila and Kaufmann, Benjamin B. and van Oudenaarden, Alexander. (2005) Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nature Genetics, 37 (9). pp. 937-944.

Becskei, Attila and Mattaj, Iain W.. (2005) Quantitative models of nuclear transport. Current Opinion in Cell Biology, 17 (1). pp. 27-34.

Becskei, Attila and Boselli, Monica G. and van Oudenaarden, Alexander. (2004) Amplitude control of cell-cycle waves by nuclear import. Nature Cell Biology , 6 (5). pp. 451-457.

Becskei, Attila and Mattaj, Iain W.. (2003) The strategy for coupling the RanGTP gradient to nuclear protein export. Proceedings of the National Academy of Sciences of the United States of America, 100 (4). pp. 1717-1722.

Becskei, A. and Séraphin, B. and Serrano, L.. (2001) Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. The EMBO Journal, 20 (10). pp. 2528-2535.

Becskei, A. and Serrano, L.. (2000) Engineering stability in gene networks by autoregulation. Nature, 405 (6786). pp. 590-593.

G

Gencoglu, Mumun and Schmidt, Alexander and Becskei, Attila. (2017) Measurement of in vivo protein binding affinities in a signaling network with mass spectrometry. ACS Synthetic Biology, 6 (7). pp. 1305-1314.

Gençoğlu, Mümün. Quantification of macromolecular interactions in GAL network. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

H

Hsu, Chieh and Jaquet, Vincent and Maleki, Farzaneh and Becskei, Attila. (2016) Contribution of bistability and noise to cell fate transitions determined by feedback opening. Journal of Molecular Biology, 428 (20). pp. 4115-4128.

Hsu, Chieh and Jaquet, Vincent and Gencoglu, Mumun and Becskei, Attila. (2016) Protein Dimerization Generates Bistability in Positive Feedback Loops. Cell Reports , 16 (5). pp. 1204-1210.

Hajihosseini, Amirhossein. Exploring robustness of bistability in prototypical positive feedback loops. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Hsu, Chieh and Scherrer, Simone and Buetti-Dinh, Antoine and Ratna, Prasuna and Pizzolato, Julia and Jaquet, Vincent and Becskei, Attila. (2012) Stochastic signalling rewires the interaction map of a multiple feedback network during yeast evolution. Nature communications, Vol. 3 , 682.

I

Iakovlev, Mikhail and Faravelli, Simone and Becskei, Attila. (2021) Gene Families With Stochastic Exclusive Gene Choice Underlie Cell Adhesion in Mammalian Cells. Frontiers in Cell and Developmental Biology, 9. p. 642212.

J

Jaquet, Vincent and Wallerich, Sandrine and Voegeli, Sylvia and Túrós, Demeter and Viloria, Eduardo C. and Becskei, Attila. (2022) Determinants of the temperature adaptation of mRNA degradation. Nucleic Acids Research, 50 (2). pp. 1092-1110.

Jaquet, Vincent and Hsu, Chieh and Becskei, Attila. (2017) Measurement of bistability in a multidimensional parameter space. Integrative Biology, 9 (2). pp. 167-177.

Jaquet, Vincent. Characterization of bistability and transition rates in transcriptional positive feedback loops. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Jancsó, G. and Domoki, F. and Sántha, P. and Varga, J. and Fischer, J. and Orosz, K. and Penke, B. and Becskei, Attila and Dux, M. and Tóth, L.. (1998) Beta-amyloid (1-42) peptide impairs blood-brain barrier function after intracarotid infusion in rats. Neuroscience Letters, 253 (2). pp. 139-141.

K

Kelemen, János Z. and Ratna, Prasuna and Scherrer, Simone and Becskei, Attila. (2010) Spatial epigenetic control of mono- and bistable gene expression. PLoS Biology, 8 (3). e1000332.

L

Louis, Matthieu and Becskei, Attila. (2002) Binary and graded responses in gene networks. Science Signaling, 2002 (143). e33.

M

Maleki, Farzaneh and Becskei, Attila. (2017) An open-loop approach to calculate noise-induced transitions. Journal of Theoretical Biology. pp. 1-13.

Maleki, Farzaneh. An open-loop approach to study the stochastic properties. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Májer, Imre and Hajihosseini, Amirhossein and Becskei, Attila. (2015) Identification of optimal parameter combinations for the emergence of bistability. Physical biology, 12 (6). 066011.

O

Ozbudak, Ertugrul M. and Becskei, Attila and van Oudenaarden, Alexander. (2005) A system of counteracting feedback loops regulates Cdc42p activity during spontaneous cell polarization. Developmental Cell, 9 (4). pp. 565-571.

R

Rahaman, Sayanur and Faravelli, Simone and Voegeli, Sylvia and Becskei, Attila. (2023) Polysome propensity and tunable thresholds in coding sequence length enable differential mRNA stability. Science Advances, 9 (39). eadh9545-eadh9545.

Ratna, Prasuna and Becskei, Attila. (2011) Construction of cis-regulatory input functions of yeast promoters. In: Yeast Genetic Networks. Basel, pp. 45-61.

Ratna, Prasuna and Scherrer, Simone and Fleischli, Christoph and Becskei, Attila. (2009) Synergy of repression and silencing gradients along the chromosome. Journal of Molecular Biology, 387 (4). pp. 826-839.

S

Stölting, Meline Nogueira Lucena and Ferrari, Stefano and Handschin, Christoph and Becskei, Attila and Provenzano, Maurizio and Sulser, Tullio and Eberli, Daniel. (2013) Myoblasts inhibit prostate cancer growth by paracrine secretion of tumor necrosis factor-α. Journal of Urology, 189 (5). pp. 1952-1959.

Sun, Li and Becskei, Attila. (2010) Systems biology: The cost of feedback control. Nature, 467 (7312). pp. 163-164.

W

Wada, Takeo and Wallerich, Sandrine and Becskei, Attila. (2019) Synthetic transcription factors switch from local to long-range control during cell differentiation. ACS Synthetic Biology, 8 (2). pp. 223-231.

Wada, Takeo and Wallerich, Sandrine and Becskei, Attila. (2018) Stochastic Gene Choice during Cellular Differentiation. Cell reports, 24 (13). pp. 3503-3512.

Wada, Takeo and Becskei, Attila. (2017) Impact of Methods on the Measurement of mRNA Turnover. International Journal of Molecular Sciences, 18 (12). p. 12.

Z

Zhan, Yinxiu. CaTCHing the functional and structural properties of chromosome folding. 2019, Doctoral Thesis, University of Basel, Faculty of Science.

This list was generated on Thu Mar 28 03:59:11 2024 CET.