Items where Author is "Velankar, Sameer"

2023

Vallat, Brinda and Tauriello, Gerardo and Bienert, Stefan and Haas, Juergen and Webb, Benjamin M. and Zheng, Wei and Peisach, Ezra and Piehl, Dennis W. and Anischanka, Ivan and Sillitoe, Ian and Tolchard, James and Varadi, Mihaly and Baker, David and Orengo, Christine and Zhang, Yang and Hoch, Jeffrey C. and Kurisu, Genji and Patwardhan, Ardan and Velankar, Sameer and Burley, Stephen K. and Sali, Andrej and Schwede, Torsten and Berman, Helen M. and Westbrook, John D.. (2023) ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models. Journal of Molecular Biology, 435 (14). p. 168021.

2022

Varadi, Mihaly and Nair, Sreenath and Sillitoe, Ian and Tauriello, Gerardo and Anyango, Stephen and Bienert, Stefan and Borges, Clemente and Deshpande, Mandar and Green, Tim and Hassabis, Demis and Hatos, Andras and Hegedus, Tamas and Hekkelman, Maarten L. and Joosten, Robbie and Jumper, John and Laydon, Agata and Molodenskiy, Dmitry and Piovesan, Damiano and Salladini, Edoardo and Salzberg, Steven L. and Sommer, Markus J. and Steinegger, Martin and Suhajda, Erzsebet and Svergun, Dmitri and Tenorio-Ku, Luiggi and Tosatto, Silvio and Tunyasuvunakool, Kathryn and Waterhouse, Andrew Mark and Schwede, Torsten and Orengo, Christine and Velankar, Sameer. (2022) 3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources. GigaScience, 11. giac118.

Akdel, Mehmet and Pires, Douglas E. V. and Pardo, Eduard Porta and Jänes, Jürgen and Zalevsky, Arthur O. and Mészáros, Bálint and Bryant, Patrick and Good, Lydia L. and Laskowski, Roman A. and Pozzati, Gabriele and Shenoy, Aditi and Zhu, Wensi and Kundrotas, Petras and Serra, Victoria Ruiz and Rodrigues, Carlos H. M. and Dunham, Alistair S. and Burke, David and Borkakoti, Neera and Velankar, Sameer and Frost, Adam and Basquin, Jérôme and Lindorff-Larsen, Kresten and Bateman, Alex and Kajava, Andrey V. and Valencia, Alfonso and Ovchinnikov, Sergey and Durairaj, Janani and Ascher, David B. and Thornton, Janet M. and Davey, Norman E. and Stein, Amelie and Elofsson, Arne and Croll, Tristan I. and Beltrao, Pedro. (2022) A structural biology community assessment of AlphaFold2 applications. Nature Structural and Molecular Biology, 29 (11). pp. 1056-1067.

2019

Berman, Helen M. and Adams, Paul D. and Bonvin, Alexandre A. and Burley, Stephen K. and Carragher, Bridget and Chiu, Wah and DiMaio, Frank and Ferrin, Thomas E. and Gabanyi, Margaret J. and Goddard, Thomas D. and Griffin, Patrick R. and Haas, Juergen and Hanke, Christian A. and Hoch, Jeffrey C. and Hummer, Gerhard and Kurisu, Genji and Lawson, Catherine L. and Leitner, Alexander and Markley, John L. and Meiler, Jens and Montelione, Gaetano T. and Phillips, George N. and Prisner, Thomas and Rappsilber, Juri and Schriemer, David C. and Schwede, Torsten and Seidel, Claus A. M. and Strutzenberg, Timothy S. and Svergun, Dmitri I. and Tajkhorshid, Emad and Trewhella, Jill and Vallat, Brinda and Velankar, Sameer and Vuister, Geerten W. and Webb, Benjamin and Westbrook, John D. and White, Kate L. and Sali, Andrej. (2019) Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. Structure (London, England : 1993), 27 (12). pp. 1745-1759.

2017

Burley, Stephen K. and Kurisu, Genji and Markley, John L. and Nakamura, Haruki and Velankar, Sameer and Berman, Helen M. and Sali, Andrej and Schwede, Torsten and Trewhella, Jill. (2017) PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models. Structure , 25 (9). pp. 1317-1318.

2015

Sali, Andrej and Berman, Helen M. and Schwede, Torsten and Trewhella, Jill and Kleywegt, Gerard and Burley, Stephen K. and Markley, John and Nakamura, Haruki and Adams, Paul and Bonvin, Alexandre M. J. J. and Chiu, Wah and Peraro, Matteo Dal and Di Maio, Frank and Ferrin, Thomas E. and Grünewald, Kay and Gutmanas, Aleksandras and Henderson, Richard and Hummer, Gerhard and Iwasaki, Kenji and Johnson, Graham and Lawson, Catherine L. and Meiler, Jens and Marti-Renom, Marc A. and Montelione, Gaetano T. and Nilges, Michael and Nussinov, Ruth and Patwardhan, Ardan and Rappsilber, Juri and Read, Randy J. and Saibil, Helen and Schröder, Gunnar F. and Schwieters, Charles D. and Seidel, Claus A. M. and Svergun, Dmitri and Topf, Maya and Ulrich, Eldon L. and Velankar, Sameer and Westbrook, John D.. (2015) Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. Structure: with folding and design, Vol. 23, H. 7. pp. 1156-1167.