Items where Author is "Tauriello, Gerardo"

2023

Schweke, Hugo and Xu, Qifang and Tauriello, Gerardo and Pantolini, Lorenzo and Schwede, Torsten and Cazals, Frédéric and Lhéritier, Alix and Fernandez-Recio, Juan and Rodríguez-Lumbreras, Luis Angel and Schueler-Furman, Ora and Varga, Julia K. and Jiménez-García, Brian and Réau, Manon F. and Bonvin, Alexandre M. J. J. and Savojardo, Castrense and Martelli, Pier-Luigi and Casadio, Rita and Tubiana, Jérôme and Wolfson, Haim J. and Oliva, Romina and Barradas-Bautista, Didier and Ricciardelli, Tiziana and Cavallo, Luigi and Venclovas, Česlovas and Olechnovič, Kliment and Guerois, Raphael and Andreani, Jessica and Martin, Juliette and Wang, Xiao and Terashi, Genki and Sarkar, Daipayan and Christoffer, Charles and Aderinwale, Tunde and Verburgt, Jacob and Kihara, Daisuke and Marchand, Anthony and Correia, Bruno E. and Duan, Rui and Qiu, Liming and Xu, Xianjin and Zhang, Shuang and Zou, Xiaoqin and Dey, Sucharita and Dunbrack, Roland L. and Levy, Emmanuel D. and Wodak, Shoshana J.. (2023) Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study. Proteomics, 23 (17). e2200323.

Vallat, Brinda and Tauriello, Gerardo and Bienert, Stefan and Haas, Juergen and Webb, Benjamin M. and Zheng, Wei and Peisach, Ezra and Piehl, Dennis W. and Anischanka, Ivan and Sillitoe, Ian and Tolchard, James and Varadi, Mihaly and Baker, David and Orengo, Christine and Zhang, Yang and Hoch, Jeffrey C. and Kurisu, Genji and Patwardhan, Ardan and Velankar, Sameer and Burley, Stephen K. and Sali, Andrej and Schwede, Torsten and Berman, Helen M. and Westbrook, John D.. (2023) ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models. Journal of Molecular Biology, 435 (14). p. 168021.

Durairaj, Janani and Waterhouse, Andrew M. and Mets, Toomas and Brodiazhenko, Tetiana and Abdullah, Minhal and Studer, Gabriel and Tauriello, Gerardo and Akdel, Mehmet and Andreeva, Antonina and Bateman, Alex and Tenson, Tanel and Hauryliuk, Vasili and Schwede, Torsten and Pereira, Joana. (2023) Uncovering new families and folds in the natural protein universe. Nature, 622 (7983). pp. 646-653.

2022

Varadi, Mihaly and Nair, Sreenath and Sillitoe, Ian and Tauriello, Gerardo and Anyango, Stephen and Bienert, Stefan and Borges, Clemente and Deshpande, Mandar and Green, Tim and Hassabis, Demis and Hatos, Andras and Hegedus, Tamas and Hekkelman, Maarten L. and Joosten, Robbie and Jumper, John and Laydon, Agata and Molodenskiy, Dmitry and Piovesan, Damiano and Salladini, Edoardo and Salzberg, Steven L. and Sommer, Markus J. and Steinegger, Martin and Suhajda, Erzsebet and Svergun, Dmitri and Tenorio-Ku, Luiggi and Tosatto, Silvio and Tunyasuvunakool, Kathryn and Waterhouse, Andrew Mark and Schwede, Torsten and Orengo, Christine and Velankar, Sameer. (2022) 3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources. GigaScience, 11. giac118.

2021

Robin, Xavier and Haas, Juergen and Gumienny, Rafal and Smolinski, Anna and Tauriello, Gerardo and Schwede, Torsten. (2021) Continuous Automated Model Evaluation (CAMEO)-Perspectives on the future of fully automated evaluation of structure prediction methods. Proteins: Structure, Function, and Bioinformatics , 89 (12). pp. 1977-1986.

Mari, Alfredo and Roloff, Tim and Stange, Madlen and Søgaard, Kirstine K. and Asllanaj, Erblin and Tauriello, Gerardo and Alexander, Leila Tamara and Schweitzer, Michael and Leuzinger, Karoline and Gensch, Alexander and Martinez, Aurélien E. and Bielicki, Julia and Pargger, Hans and Siegemund, Martin and Nickel, Christian H. and Bingisser, Roland and Osthoff, Michael and Bassetti, Stefano and Sendi, Parham and Battegay, Manuel and Marzolini, Catia and Seth-Smith, Helena M. B. and Schwede, Torsten and Hirsch, Hans H. and Egli, Adrian. (2021) Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance. Microorganisms, 9 (5). p. 1094.

Studer, Gabriel and Tauriello, Gerardo and Bienert, Stefan and Biasini, Marco and Johner, Niklaus and Schwede, Torsten. (2021) ProMod3-A versatile homology modelling toolbox. PLoS Computational Biology, 17 (1). e1008667.

2020

Gervasoni, Silvia and Vistoli, Giulio and Talarico, Carmine and Manelfi, Candida and Beccari, Andrea R. and Studer, Gabriel and Tauriello, Gerardo and Waterhouse, Andrew Mark and Schwede, Torsten and Pedretti, Alessandro. (2020) A Comprehensive Mapping of the Druggable Cavities within the SARS-CoV-2 Therapeutically Relevant Proteins by Combining Pocket and Docking Searches as Implemented in Pockets 2.0. International journal of molecular sciences, 21 (14). p. 5152.

2019

Haas, Juergen and Gumienny, Rafal and Barbato, Alessandro and Ackermann, Flavio and Tauriello, Gerardo and Bertoni, Martino and Studer, Gabriel and Smolinski, Anna and Schwede, Torsten. (2019) Introducing "best single template" models as reference baseline for the Continuous Automated Model Evaluation (CAMEO). Proteins, 87 (12). pp. 1378-1387.

Studer, Gabriel and Tauriello, Gerardo and Bienert, Stefan and Waterhouse, Andrew Mark and Bertoni, Martino and Bordoli, Lorenza and Schwede, Torsten and Lepore, Rosalba. (2019) Modeling of Protein Tertiary and Quaternary Structures Based on Evolutionary Information. Methods in Molecular Biology, 1851. pp. 301-316.

2018

Waterhouse, Andrew and Bertoni, Martino and Bienert, Stefan and Studer, Gabriel and Tauriello, Gerardo and Gumienny, Rafal and Heer, Florian T. and de Beer, Tjaart A. P. and Rempfer, Christine and Bordoli, Lorenza and Lepore, Rosalba and Schwede, Torsten. (2018) SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic acids research, 46 (W1). W296-W303.

2017

Bienert, Stefan and Waterhouse, Andrew and de Beer, Tjaart A. P. and Tauriello, Gerardo and Studer, Gabriel and Bordoli, Lorenza and Schwede, Torsten. (2017) The SWISS-MODEL Repository - new features and functionality. Nucleic Acids Research, 45 (D1). D313-D319.