Items where Author is "Studer, Gabriel"
Jump to: 19 March 2023 | 2023 | 20 December 2022 | 2021 | 2020 | 2019 | 2018 | 2017 | December 2014 | 2014 | 2013 Number of items: 18. 19 March 2023Durairaj, Janani and Waterhouse, Andrew M. and Mets, Toomas and Brodiazhenko, Tetiana and Abdullah, Minhal and Studer, Gabriel and Akdel, Mehmet and Andreeva, Antonina and Bateman, Alex and Tenson, Tanel and Hauryliuk, Vasili and Schwede, Torsten and Pereira, Joana. (2023) What is hidden in the darkness? Deep-learning assisted large-scale protein family curation uncovers novel protein families and folds. 2023Kryshtafovych, Andriy and Antczak, Maciej and Szachniuk, Marta and Zok, Tomasz and Kretsch, Rachael C. and Rangan, Ramya and Pham, Phillip and Das, Rhiju and Robin, Xavier and Studer, Gabriel and Durairaj, Janani and Eberhardt, Jerome and Sweeney, Aaron and Topf, Maya and Schwede, Torsten and Fidelis, Krzysztof and Moult, John. (2023) New prediction categories in CASP15. Proteins: Structure, Function, and Bioinformatics . Durairaj, Janani and Waterhouse, Andrew M. and Mets, Toomas and Brodiazhenko, Tetiana and Abdullah, Minhal and Studer, Gabriel and Tauriello, Gerardo and Akdel, Mehmet and Andreeva, Antonina and Bateman, Alex and Tenson, Tanel and Hauryliuk, Vasili and Schwede, Torsten and Pereira, Joana. (2023) Uncovering new families and folds in the natural protein universe. Nature, 622 (7983). pp. 646-653. 20 December 2022Pantolini, Lorenzo and Studer, Gabriel and Pereira, Joana and Durairaj, Janani and Schwede, Torsten . (2022) Embedding-based alignment: combining protein language models and alignment approaches to detect structural similarities in the twilight-zone. 2021Studer, Gabriel and Tauriello, Gerardo and Bienert, Stefan and Biasini, Marco and Johner, Niklaus and Schwede, Torsten. (2021) ProMod3-A versatile homology modelling toolbox. PLoS Computational Biology, 17 (1). e1008667. 2020Gervasoni, Silvia and Vistoli, Giulio and Talarico, Carmine and Manelfi, Candida and Beccari, Andrea R. and Studer, Gabriel and Tauriello, Gerardo and Waterhouse, Andrew Mark and Schwede, Torsten and Pedretti, Alessandro. (2020) A Comprehensive Mapping of the Druggable Cavities within the SARS-CoV-2 Therapeutically Relevant Proteins by Combining Pocket and Docking Searches as Implemented in Pockets 2.0. International journal of molecular sciences, 21 (14). p. 5152. 2019Cheng, Jianlin and Choe, Myong-Ho and Elofsson, Arne and Han, Kun-Sop and Hou, Jie and Maghrabi, Ali H. A. and McGuffin, Liam J. and Menéndez-Hurtado, David and Olechnovič, Kliment and Schwede, Torsten and Studer, Gabriel and Uziela, Karolis and Venclovas, Česlovas and Wallner, Björn. (2019) Estimation of model accuracy in CASP13. Proteins, 87 (12). pp. 1361-1377. Haas, Juergen and Gumienny, Rafal and Barbato, Alessandro and Ackermann, Flavio and Tauriello, Gerardo and Bertoni, Martino and Studer, Gabriel and Smolinski, Anna and Schwede, Torsten. (2019) Introducing "best single template" models as reference baseline for the Continuous Automated Model Evaluation (CAMEO). Proteins, 87 (12). pp. 1378-1387. Studer, Gabriel and Tauriello, Gerardo and Bienert, Stefan and Waterhouse, Andrew Mark and Bertoni, Martino and Bordoli, Lorenza and Schwede, Torsten and Lepore, Rosalba. (2019) Modeling of Protein Tertiary and Quaternary Structures Based on Evolutionary Information. Methods in Molecular Biology, 1851. pp. 301-316. Studer, Gabriel and Rempfer, Christine and Waterhouse, Andrew M. and Gumienny, Rafal and Haas, Juergen and Schwede, Torsten. (2019) QMEANDisCo - Distance Constraints Applied on Model Quality Estimation. Bioinformatics, 36 (6). pp. 1765-1771. 2018Haas, Jürgen and Barbato, Alessandro and Behringer, Dario and Studer, Gabriel and Roth, Steven and Bertoni, Martino and Mostaguir, Khaled and Gumienny, Rafal and Schwede, Torsten. (2018) Continuous Automated Model Evaluation (CAMEO) Complementing the Critical Assessment of Structure Prediction in CASP12. Proteins, 86 Suppl 1. pp. 387-398. Waterhouse, Andrew and Bertoni, Martino and Bienert, Stefan and Studer, Gabriel and Tauriello, Gerardo and Gumienny, Rafal and Heer, Florian T. and de Beer, Tjaart A. P. and Rempfer, Christine and Bordoli, Lorenza and Lepore, Rosalba and Schwede, Torsten. (2018) SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic acids research, 46 (W1). W296-W303. 2017Studer, Gabriel. Efficient algorithms in protein modelling. 2017, Doctoral Thesis, University of Basel, Faculty of Science. Bienert, Stefan and Waterhouse, Andrew and de Beer, Tjaart A. P. and Tauriello, Gerardo and Studer, Gabriel and Bordoli, Lorenza and Schwede, Torsten. (2017) The SWISS-MODEL Repository - new features and functionality. Nucleic Acids Research, 45 (D1). D313-D319. December 2014Rämö, Pauli and Drewek, Anna and Arrieumerlou, Cécile and Beerenwinkel, Niko and Ben-Tekaya, Houchaïma and Cardel, Bettina and Casanova, Alain and Conde-Alvarez, Raquel and Cossart, Pascale and Csúcs, Gábor and Eicher, Simone and Emmenlauer, Mario and Greber, Urs and Hardt, Wolf-Dietrich and Helenius, Ari and Kasper, Christoph and Kaufmann, Andreas and Kreibich, Saskia and Kühbacher, Andreas and Kunszt, Peter and Low, Shyan Huey and Mercer, Jason and Mudrak, Daria and Muntwiler, Simone and Pelkmans, Lucas and Pizarro-Cerdá, Javier and Podvinec, Michael and Pujadas, Eva and Rinn, Bernd and Rouilly, Vincent and Schmich, Fabian and Siebourg-Polster, Juliane and Snijder, Berend and Stebler, Michael and Studer, Gabriel and Szczurek, Ewa and Truttmann, Matthias and von Mering, Christian and Vonderheit, Andreas and Yakimovich, Artur and Bühlmann, Peter and Dehio, Christoph. (2014) Simultaneous analysis of large-scale RNAi screens for pathogen entry. BMC Genomics, 15 (1). p. 1162. 2014Studer, Gabriel and Biasini, Marco and Schwede, Torsten. (2014) Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane). Bioinformatics, Vol. 30, H. 17 , i505-i511. Biasini, Marco and Bienert, Stefan and Waterhouse, Andrew and Arnold, Konstantin and Studer, Gabriel and Schmidt, Tobias and Kiefer, Florian and Cassarino, Tiziano Gallo and Bertoni, Martino and Bordoli, Lorenza and Schwede, Torsten. (2014) SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Research, 42 (W1). W252-W258. 2013Biasini, Marco and Schmidt, Tobias and Bienert, Stefan. and Mariani, Valerio and Studer, Gabriel and Haas, Juergen and Johner, Niklaus and Schenk, Andreas D. and Philippsen, Ansgar and Schwede, Torsten. (2013) OpenStructure : an integrated software framework for computational structural biology. Acta crystallographica. Section D, Biological crystallography, Vol. 69, Pt. 5. pp. 701-709. |
