Items where Author is "Emmenlauer, Mario"

2019

Casanova, Alain and Low, Shyan Huey and Québatte, Maxime and Sedzicki, Jaroslaw and Tschon, Therese and Ketterer, Maren and Smith, Kevin and Emmenlauer, Mario and Ben-Tekaya, Houchaima and Dehio, Christoph. (2019) A Role for the VPS Retromer in Brucella Intracellular Replication Revealed by Genomewide siRNA Screening. mSphere, 4 (3). e00380-19.

Liu, Yansheng and Mi, Yang and Mueller, Torsten and Kreibich, Saskia and Williams, Evan G. and Van Drogen, Audry and Borel, Christelle and Frank, Max and Germain, Pierre-Luc and Bludau, Isabell and Mehnert, Martin and Seifert, Michael and Emmenlauer, Mario and Sorg, Isabel and Bezrukov, Fedor and Sloan Bena, Frederique and Zhou, Hu and Dehio, Christoph and Testa, Giuseppe and Saez-Rodriguez, Julio and Antonarakis, Stylianos E. and Hardt, Wolf-Dietrich and Aebersold, Ruedi. (2019) Multi-omic measurements of heterogeneity in HeLa cells across laboratories. Nature Biotechnology, 37 (3). pp. 314-322.

Dirmeier, Simon and Emmenlauer, Mario and Dehio, Christoph and Beerenwinkel, Niko. (2019) PyBDA: a command line tool for automated analysis of big biological data sets. BMC bioinformatics, 20 (1). p. 564.

2018

Daga, Neha and Eicher, Simone and Kannan, Abhilash and Casanova, Alain and Low, Shyan H. and Kreibich, Saskia and Andritschke, Daniel and Emmenlauer, Mario and Jenkins, Jeremy L. and Hardt, Wolf-Dietrich and Greber, Urs F. and Dehio, Christoph and von Mering, Christian. (2018) Growth-restricting effects of siRNA transfections: a largely deterministic combination of off-target binding and hybridization-independent competition. Nucleic acids research, 46 (18). pp. 9309-9320.

Srivatsa, Sumana and Kuipers, Jack and Schmich, Fabian and Eicher, Simone and Emmenlauer, Mario and Dehio, Christoph and Beerenwinkel, Niko. (2018) Improved pathway reconstruction from RNA interference screens by exploiting off-target effects. Bioinformatics, 34 (13). i519-i527.

2017

Riba, Andrea and Emmenlauer, Mario and Chen, Amy and Sigoillot, Frederic and Cong, Feng and Dehio, Christoph and Jenkins, Jeremy and Zavolan, Mihaela. (2017) Explicit Modeling of siRNA-Dependent On- and Off-Target Repression Improves the Interpretation of Screening Results. Cell Systems, 4 (2). pp. 182-193.

8 May 2016

Casanova, Alain and Low, Shyan H. and Emmenlauer, Mario and Conde-Alvarez, Raquel and Salcedo, Suzana P. and Gorvel, Jean-Pierre and Dehio, Christoph. (2016) Microscopy-based Assays for High-throughput Screening of Host Factors Involved in Brucella Infection of Hela Cells. Journal of Visualized Experiments (114). e54263.

2016

Andritschke, Daniel and Dilling, Sabrina and Emmenlauer, Mario and Welz, Tobias and Schmich, Fabian and Misselwitz, Benjamin and Rämö, Pauli and Rottner, Klemens and Kerkhoff, Eugen and Wada, Teiji and Penninger, Josef M. and Beerenwinkel, Niko and Horvath, Peter and Dehio, Christoph and Hardt, Wolf-Dietrich. (2016) A Genome-Wide siRNA Screen Implicates Spire1/2 in SipA-Driven Salmonella Typhimurium Host Cell Invasion. PLoS ONE, 11 (9). e0161965.

11 November 2015

Kreibich, Saskia and Emmenlauer, Mario and Fredlund, Jennifer and Rämö, Pauli and Münz, Christian and Dehio, Christoph and Enninga, Jost and Hardt, Wolf-Dietrich. (2015) Autophagy Proteins Promote Repair of Endosomal Membranes Damaged by the Salmonella Type Three Secretion System 1. Cell host & microbe, 18 (5). pp. 527-537.

21 October 2015

Schmich, Fabian and Szczurek, Ewa and Kreibich, Saskia and Dilling, Sabrina and Andritschke, Daniel and Casanova, Alain and Low, Shyan Huey and Eicher, Simone and Muntwiler, Simone and Emmenlauer, Mario and Rämo, Pauli and Conde-Alvarez, Raquel and von Mering, Christian and Hardt, Wolf-Dietrich and Dehio, Christoph and Beerenwinkel, Niko. (2015) Erratum to: gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens. Genome Biology, 16 (233). p. 1.

7 October 2015

Schmich, Fabian and Szczurek, Ewa and Kreibich, Saskia and Dilling, Sabrina and Andritschke, Daniel and Casanova, Alain and Low, Shyan Huey and Eicher, Simone and Muntwiler, Simone and Emmenlauer, Mario and Rämö, Pauli and Conde-Alvarez, Raquel and von Mering, Christian and Hardt, Wolf-Dietrich and Dehio, Christoph and Beerenwinkel, Niko. (2015) gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens. Genome Biology, 16 (220). pp. 1-12.

April 2015

Siebourg-Polster, Juliane and Mudrak, Daria and Emmenlauer, Mario and Rämö, Pauli and Dehio, Christoph and Greber, Urs and Fröhlich, Holger and Beerenwinkel, Niko. (2015) NEMix: single-cell nested effects models for probabilistic pathway stimulation. PLoS Computational Biology, 11 (4). e1004078.

2015

Kühbacher, Andreas and Emmenlauer, Mario and Rämö, Pauli and Kafai, Natasha and Dehio, Christoph and Cossart, Pascale and Pizarro-Cerdá, Javier. (2015) Genome-Wide siRNA Screen Identifies Complementary Signaling Pathways Involved in Listeria Infection and Reveals Different Actin Nucleation Mechanisms during Listeria Cell Invasion and Actin Comet Tail Formation. mBio, 6 (3). e00598-15.

December 2014

Rämö, Pauli and Drewek, Anna and Arrieumerlou, Cécile and Beerenwinkel, Niko and Ben-Tekaya, Houchaïma and Cardel, Bettina and Casanova, Alain and Conde-Alvarez, Raquel and Cossart, Pascale and Csúcs, Gábor and Eicher, Simone and Emmenlauer, Mario and Greber, Urs and Hardt, Wolf-Dietrich and Helenius, Ari and Kasper, Christoph and Kaufmann, Andreas and Kreibich, Saskia and Kühbacher, Andreas and Kunszt, Peter and Low, Shyan Huey and Mercer, Jason and Mudrak, Daria and Muntwiler, Simone and Pelkmans, Lucas and Pizarro-Cerdá, Javier and Podvinec, Michael and Pujadas, Eva and Rinn, Bernd and Rouilly, Vincent and Schmich, Fabian and Siebourg-Polster, Juliane and Snijder, Berend and Stebler, Michael and Studer, Gabriel and Szczurek, Ewa and Truttmann, Matthias and von Mering, Christian and Vonderheit, Andreas and Yakimovich, Artur and Bühlmann, Peter and Dehio, Christoph. (2014) Simultaneous analysis of large-scale RNAi screens for pathogen entry. BMC Genomics, 15 (1). p. 1162.

2014

Franceschini, Andrea and Meier, Roger and Casanova, Alain and Kreibich, Saskia and Daga, Neha and Andritschke, Daniel and Dilling, Sabrina and Rämö, Pauli and Emmenlauer, Mario and Kaufmann, Andreas and Conde-Álvarez, Raquel and Low, Shyan Huey and Pelkmans, Lucas and Helenius, Ari and Hardt, Wolf-Dietrich and Dehio, Christoph and von Mering, Christian. (2014) Specific inhibition of diverse pathogens in human cells by synthetic microRNA-like oligonucleotides inferred from RNAi screens. Proceedings of the National Academy of Sciences, 111 (12). pp. 4548-4553.

2013

Kühbacher, Andreas and Gouin, Edith and Mercer, Jason and Emmenlauer, Mario and Dehio, Christoph and Cossart, Pascale and Pizarro-Cerdá, Javier. (2013) Imaging InlC secretion to investigate cellular infection by the bacterial pathogen Listeria monocytogenes. Journal of Visualized Experiments, 79. e51043.